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Lipopeptides from Cyanobacteria: Structure and Role in a Trophic Cascade
Lipopeptides from Cyanobacteria : structure and role in a trophic cascade Louis Bornancin To cite this version: Louis Bornancin. Lipopeptides from Cyanobacteria : structure and role in a trophic cascade. Other. Université Montpellier, 2016. English. NNT : 2016MONTT202. tel-02478948 HAL Id: tel-02478948 https://tel.archives-ouvertes.fr/tel-02478948 Submitted on 14 Feb 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Délivré par Université de Montpellier Préparée au sein de l’école doctorale Sciences Chimiques Balard Et de l’unité de recherche Centre de Recherche Insulaire et Observatoire de l’Environnement (USR CNRS-EPHE-UPVD 3278) Spécialité : Ingénierie des Biomolécules Présentée par Louis BORNANCIN Lipopeptides from Cyanobacteria : Structure and Role in a Trophic Cascade Soutenue le 11 octobre 2016 devant le jury composé de Monsieur Ali AL-MOURABIT, DR CNRS, Rapporteur Institut de Chimie des Substances Naturelles Monsieur Gérald CULIOLI, MCF, Rapporteur Université de Toulon Madame Martine HOSSAERT-MCKEY, DR CNRS, Examinatrice, Centre d’Écologie -
DEEP SEA LEBANON RESULTS of the 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project
DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project March 2018 DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project Citation: Aguilar, R., García, S., Perry, A.L., Alvarez, H., Blanco, J., Bitar, G. 2018. 2016 Deep-sea Lebanon Expedition: Exploring Submarine Canyons. Oceana, Madrid. 94 p. DOI: 10.31230/osf.io/34cb9 Based on an official request from Lebanon’s Ministry of Environment back in 2013, Oceana has planned and carried out an expedition to survey Lebanese deep-sea canyons and escarpments. Cover: Cerianthus membranaceus © OCEANA All photos are © OCEANA Index 06 Introduction 11 Methods 16 Results 44 Areas 12 Rov surveys 16 Habitat types 44 Tarablus/Batroun 14 Infaunal surveys 16 Coralligenous habitat 44 Jounieh 14 Oceanographic and rhodolith/maërl 45 St. George beds measurements 46 Beirut 19 Sandy bottoms 15 Data analyses 46 Sayniq 15 Collaborations 20 Sandy-muddy bottoms 20 Rocky bottoms 22 Canyon heads 22 Bathyal muds 24 Species 27 Fishes 29 Crustaceans 30 Echinoderms 31 Cnidarians 36 Sponges 38 Molluscs 40 Bryozoans 40 Brachiopods 42 Tunicates 42 Annelids 42 Foraminifera 42 Algae | Deep sea Lebanon OCEANA 47 Human 50 Discussion and 68 Annex 1 85 Annex 2 impacts conclusions 68 Table A1. List of 85 Methodology for 47 Marine litter 51 Main expedition species identified assesing relative 49 Fisheries findings 84 Table A2. List conservation interest of 49 Other observations 52 Key community of threatened types and their species identified survey areas ecological importanc 84 Figure A1. -
Biodiversity Journal, 2020, 11 (4): 861–870
Biodiversity Journal, 2020, 11 (4): 861–870 https://doi.org/10.31396/Biodiv.Jour.2020.11.4.861.870 The biodiversity of the marine Heterobranchia fauna along the central-eastern coast of Sicily, Ionian Sea Andrea Lombardo* & Giuliana Marletta Department of Biological, Geological and Environmental Sciences - Section of Animal Biology, University of Catania, via Androne 81, 95124 Catania, Italy *Corresponding author: [email protected] ABSTRACT The first updated list of the marine Heterobranchia for the central-eastern coast of Sicily (Italy) is here reported. This study was carried out, through a total of 271 scuba dives, from 2017 to the beginning of 2020 in four sites located along the Ionian coasts of Sicily: Catania, Aci Trezza, Santa Maria La Scala and Santa Tecla. Through a photographic data collection, 95 taxa, representing 17.27% of all Mediterranean marine Heterobranchia, were reported. The order with the highest number of found species was that of Nudibranchia. Among the study areas, Catania, Santa Maria La Scala and Santa Tecla had not a remarkable difference in the number of species, while Aci Trezza had the lowest number of species. Moreover, among the 95 taxa, four species considered rare and six non-indigenous species have been recorded. Since the presence of a high diversity of sea slugs in a relatively small area, the central-eastern coast of Sicily could be considered a zone of high biodiversity for the marine Heterobranchia fauna. KEY WORDS diversity; marine Heterobranchia; Mediterranean Sea; sea slugs; species list. Received 08.07.2020; accepted 08.10.2020; published online 20.11.2020 INTRODUCTION more researches were carried out (Cattaneo Vietti & Chemello, 1987). -
Nudipleura Bathydorididae Bathydoris Clavigera AY165754 2064 AY427444 1383 AF249222 445 AF249808 599
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`);D8D-S-"Q"'("%)D:":/)U&55/B.&%)&I)_"5/&%:&5&1K)"%7)</&5&1K,)</&V(&)U/%:/')\AP,) M(BC"'7S>"1%/'SD:'=)+a,)Xa333)A9%BC/%,)</'H"%K`)?>/#:/'%)4$#:'"5("%)A$#/$H,)\&BR/7)-"1);b,)>/5#CG&&5)FU,)_/':C,) >4)YbXY,)4$#:'"5("=))U&''/#G&%7/%B/)"%7)'/c$/#:#)I&')H":/'("5#)#C&$57)V/)"77'/##/7):&)!=*=)d/H"(5e)R"%&f"&'(=$S :&RK&="B=gGh) 7&33'+8+#1-.9)"#:/.8-;/#<) =-*'+)7>?)8$B5/&.7/)#/c$/%B/#)&I)G'(H/'#)$#/7)I&')"HG5(iB".&%)"%7)#/c$/%B(%1 =-*'+)7@?)<"#:'&G&7)#G/B(/#)"%7)#/c$/%B/#)$#/7)(%):C/)GCK5&1/%/.B)'/B&%#:'$B.&%)&I)/$:CK%/$'"%)B5"7/#)(%B5$7(%1) M(%1(B$5&(7/" A"$&.+)7>?)M46A\):'//#)V"#/7)&%)I&$'S1/%/)7":"#/:)T(:C&$:)&%/)&I):T&)H"g&')%$7(G5/$'"%)#$VB5"7/#e)d"h)8$7(V'"%BC(") d!"#$%&'()*+"%7),-.)/)&"h)"%7)dVh)_5/$'&V'"%BC&(7/")d0.-1('2("34$1*+"%7)5'/#$'/6*'3)"h= A"$&.+)7@?)O(H/SB"5(V'":/7)-J4DO):'//#)T(:C&$:)&%/)&I)I&$')B"5(V'".&%)G'(&'#e)d"h)i'#:)#G5(:)T(:C(%)J$&G(#:C&V'"%BC(")"%7) dVh)#G5(:#)V/:T//%)7"(%4$)1/)"%7)8/-"9'.)"%7)dBh)V/:T//%):)39)41.'6*)*)"%7):C'//)&:C/')'(%1(B$5(7#= A"$&.+)7B?)A'-"K/#):'//)V"#/7)&%)I&$'S1/%/)7":"#/:= -
“Opisthobranchia”! a Review on the Contribution of Mesopsammic Sea Slugs to Euthyneuran Systematics
Thalassas, 27 (2): 101-112 An International Journal of Marine Sciences BYE BYE “OPISTHOBRANCHIA”! A REVIEW ON THE CONTRIBUTION OF MESOPSAMMIC SEA SLUGS TO EUTHYNEURAN SYSTEMATICS SCHRÖDL M(1), JÖRGER KM(1), KLUSSMANN-KOLB A(2) & WILSON NG(3) Key words: Mollusca, Heterobranchia, morphology, molecular phylogeny, classification, evolution. ABSTRACT of most mesopsammic “opisthobranchs” within a comprehensive euthyneuran taxon set. During the last decades, textbook concepts of “Opisthobranchia” have been challenged by The present study combines our published morphology-based and, more recently, molecular and unpublished topologies, and indicates that studies. It is no longer clear if any precise distinctions monophyletic Rhodopemorpha cluster outside of can be made between major opisthobranch and Euthyneura among shelled basal heterobranchs, acte- pulmonate clades. Worm-shaped, mesopsammic taxa onids are the sister to rissoellids, and Nudipleura such as Acochlidia, Platyhedylidae, Philinoglossidae are the basal offshoot of Euthyneura. Furthermore, and Rhodopemorpha were especially problematic in Pyramidellidae, Sacoglossa and Acochlidia cluster any morphology-based system. Previous molecular within paraphyletic Pulmonata, as sister to remaining phylogenetic studies contained a very limited sampling “opisthobranchs”. Worm-like mesopsammic hetero- of minute and elusive meiofaunal slugs. Our recent branch taxa have clear independent origins and thus multi-locus approaches of mitochondrial COI and 16S their similarities are the result of convergent evolu- rRNA genes and nuclear 18S and 28S rRNA genes tion. Classificatory and evolutionary implications (“standard markers”) thus included representatives from our tree hypothesis are quite dramatic, as shown by some examples, and need to be explored in more detail in future studies. (1) Bavarian State Collection of Zoology. Münchhausenstr. -
Ringiculid Bubble Snails Recovered As the Sister Group to Sea Slugs
www.nature.com/scientificreports OPEN Ringiculid bubble snails recovered as the sister group to sea slugs (Nudipleura) Received: 13 May 2016 Yasunori Kano1, Bastian Brenzinger2,3, Alexander Nützel4, Nerida G. Wilson5 & Accepted: 08 July 2016 Michael Schrödl2,3 Published: 08 August 2016 Euthyneuran gastropods represent one of the most diverse lineages in Mollusca (with over 30,000 species), play significant ecological roles in aquatic and terrestrial environments and affect many aspects of human life. However, our understanding of their evolutionary relationships remains incomplete due to missing data for key phylogenetic lineages. The present study integrates such a neglected, ancient snail family Ringiculidae into a molecular systematics of Euthyneura for the first time, and is supplemented by the first microanatomical data. Surprisingly, both molecular and morphological features present compelling evidence for the common ancestry of ringiculid snails with the highly dissimilar Nudipleura—the most species-rich and well-known taxon of sea slugs (nudibranchs and pleurobranchoids). A new taxon name Ringipleura is proposed here for these long-lost sisters, as one of three major euthyneuran clades with late Palaeozoic origins, along with Acteonacea (Acteonoidea + Rissoelloidea) and Tectipleura (Euopisthobranchia + Panpulmonata). The early Euthyneura are suggested to be at least temporary burrowers with a characteristic ‘bubble’ shell, hypertrophied foot and headshield as exemplified by many extant subtaxa with an infaunal mode of life, while the expansion of the mantle might have triggered the explosive Mesozoic radiation of the clade into diverse ecological niches. The traditional gastropod subclass Euthyneura is a highly diverse clade of snails and slugs with at least 30,000 living species1,2. -
Espécies Marinhas De Cabo Verde (BIOTECMAR)
EQUINODERMES 77 Ophiothrix fragilis OfiuróideOfiuríde-comum Glatter SchlangensternZerbrechlicher Schlangenstern OfiuraOfiura fina Ophiure lisse Ophiure fragile AnnulatedBrittle star brittle star Stella serpentina Stellaliscia serpentina spinosa Ophioderma longicaudum Echinometra lucunter Nieves González Ofiuróide Ouriço-preto-de-poças Glatter Schlangenstern Felsenbohrerseeigel Ofiura Erizo de mar Ophiure lisse Oursin de récif Annulated brittle star Rock boring urchin Stella serpentina liscia Riccio de mare 78 Diadema africanum Centrostephanus longispinus Maite Vázquez Ouriço-de-espinhos-compridos Diademseeigel Ouriço-de-espinhos-compridos Diademseeigel Diadema, eriza Oursin diadème africain Puerco espín marino * Oursin diadème méditerranéen * Long-spined black sea urchin Riccio diadema Largest urchin Riccio diadema Eucidaris tribuloides Holothuria surinamensis Oriço, ouriço Pon-di-mar, biroti Ostatlantik-Lanzenseeigel Variable Seegurke Erizo de palitos Oursin-lance antillais Holoturia, pepino de mar Concombre de mer Slate pen sea urchin Riccio matita Variable sea cucumber Cetriolo di mare punte nere EQUINODERMES 79 Holothuria lentiginosa Isostichopus badionotus Pon d´mar, biroti Pepino-do-mar Seegurke Sommersprossen Seegurke Pepino de pecas Concombre de mer tacheté Pepino de mar Holothurie à points Sea cucumber freckles Cetriolo di mare lentigginoso Sea cucumber Cetriolo di mare Holothuria mammata Euapta lappa Wurmseegurke Pon d´mar, biroti Variable Seegurke Pepino-do-mar Holothurie-serpent collante Holoturia, pepino de mar Concombre cracheur -
The Limpet Form in Gastropods: Evolution, Distribution, and Implications for the Comparative Study of History
UC Davis UC Davis Previously Published Works Title The limpet form in gastropods: Evolution, distribution, and implications for the comparative study of history Permalink https://escholarship.org/uc/item/8p93f8z8 Journal Biological Journal of the Linnean Society, 120(1) ISSN 0024-4066 Author Vermeij, GJ Publication Date 2017 DOI 10.1111/bij.12883 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Biological Journal of the Linnean Society, 2016, , – . With 1 figure. Biological Journal of the Linnean Society, 2017, 120 , 22–37. With 1 figures 2 G. J. VERMEIJ A B The limpet form in gastropods: evolution, distribution, and implications for the comparative study of history GEERAT J. VERMEIJ* Department of Earth and Planetary Science, University of California, Davis, Davis, CA,USA C D Received 19 April 2015; revised 30 June 2016; accepted for publication 30 June 2016 The limpet form – a cap-shaped or slipper-shaped univalved shell – convergently evolved in many gastropod lineages, but questions remain about when, how often, and under which circumstances it originated. Except for some predation-resistant limpets in shallow-water marine environments, limpets are not well adapted to intense competition and predation, leading to the prediction that they originated in refugial habitats where exposure to predators and competitors is low. A survey of fossil and living limpets indicates that the limpet form evolved independently in at least 54 lineages, with particularly frequent origins in early-diverging gastropod clades, as well as in Neritimorpha and Heterobranchia. There are at least 14 origins in freshwater and 10 in the deep sea, E F with known times ranging from the Cambrian to the Neogene. -
The 1940 Ricketts-Steinbeck Sea of Cortez Expedition: an 80-Year Retrospective Guest Edited by Richard C
JOURNAL OF THE SOUTHWEST Volume 62, Number 2 Summer 2020 Edited by Jeffrey M. Banister THE SOUTHWEST CENTER UNIVERSITY OF ARIZONA TUCSON Associate Editors EMMA PÉREZ Production MANUSCRIPT EDITING: DEBRA MAKAY DESIGN & TYPOGRAPHY: ALENE RANDKLEV West Press, Tucson, AZ COVER DESIGN: CHRISTINE HUBBARD Editorial Advisors LARRY EVERS ERIC PERRAMOND University of Arizona Colorado College MICHAEL BRESCIA LUCERO RADONIC University of Arizona Michigan State University JACQUES GALINIER SYLVIA RODRIGUEZ CNRS, Université de Paris X University of New Mexico CURTIS M. HINSLEY THOMAS E. SHERIDAN Northern Arizona University University of Arizona MARIO MATERASSI CHARLES TATUM Università degli Studi di Firenze University of Arizona CAROLYN O’MEARA FRANCISCO MANZO TAYLOR Universidad Nacional Autónoma Hermosillo, Sonora de México RAYMOND H. THOMPSON MARTIN PADGET University of Arizona University of Wales, Aberystwyth Journal of the Southwest is published in association with the Consortium for Southwest Studies: Austin College, Colorado College, Fort Lewis College, Southern Methodist University, Texas State University, University of Arizona, University of New Mexico, and University of Texas at Arlington. Contents VOLUME 62, NUMBER 2, SUmmer 2020 THE 1940 RICKETTS-STEINBECK SEA OF CORTEZ EXPEDITION: AN 80-YEAR RETROSPECTIVE GUesT EDITed BY RIchard C. BRUsca DedIcaTed TO The WesTerN FLYer FOUNdaTION Publishing the Southwest RIchard C. BRUsca 215 The 1940 Ricketts-Steinbeck Sea of Cortez Expedition, with Annotated Lists of Species and Collection Sites RIchard C. BRUsca 218 The Making of a Marine Biologist: Ed Ricketts RIchard C. BRUsca AND T. LINdseY HasKIN 335 Ed Ricketts: From Pacific Tides to the Sea of Cortez DONald G. Kohrs 373 The Tangled Journey of the Western Flyer: The Boat and Its Fisheries KEVIN M. -
THE FESTIVUS ISSN: 0738-9388 a Publication of the San Diego Shell Club
(?mo< . fn>% Vo I. 12 ' 2 ? ''f/ . ) QUfrl THE FESTIVUS ISSN: 0738-9388 A publication of the San Diego Shell Club Volume: XXII January 11, 1990 Number: 1 CLUB OFFICERS SCIENTIFIC REVIEW BOARD President Kim Hutsell R. Tucker Abbott Vice President David K. Mulliner American Malacologists Secretary (Corres. ) Richard Negus Eugene V. Coan Secretary (Record. Wayne Reed Research Associate Treasurer Margaret Mulliner California Academy of Sciences Anthony D’Attilio FESTIVUS STAFF 2415 29th Street Editor Carole M. Hertz San Diego California 92104 Photographer David K. Mulliner } Douglas J. Eernisse MEMBERSHIP AND SUBSCRIPTION University of Michigan Annual dues are payable to San Diego William K. Emerson Shell Club. Single member: $10.00; American Museum of Natural History Family membership: $12.00; Terrence M. Gosliner Overseas (surface mail): $12.00; California Academy of Sciences Overseas (air mail): $25.00. James H. McLean Address all correspondence to the Los Angeles County Museum San Diego Shell Club, Inc., c/o 3883 of Natural History Mt. Blackburn Ave., San Diego, CA 92111 Barry Roth Research Associate Single copies of this issue: $5.00. Santa Barbara Museum of Natural History Postage is additional. Emily H. Vokes Tulane University The Festivus is published monthly except December. The publication Meeting date: third Thursday, 7:30 PM, date appears on the masthead above. Room 104, Casa Del Prado, Balboa Park. PROGRAM TRAVELING THE EAST COAST OF AUSTRALIA Jules and Carole Hertz will present a slide program on their recent three week trip to Queensland and Sydney. They will also bring a display of shells they collected Slides of the Club Christmas party will also be shown. -
A Polyvalent and Universal Tool for Genomic Studies In
A polyvalent and universal tool for genomic studies in gastropod molluscs (Heterobranchia: Tectipleura) Juan Moles1 and Gonzalo Giribet1 1Harvard University Faculty of Arts and Sciences April 28, 2020 Abstract Molluscs are the second most diverse animal phylum and heterobranch gastropods present ~44,000 species. These comprise fascinating creatures with a huge morphological and ecological disparity. Such great diversity comes with even larger phyloge- netic uncertainty and many taxa have been largely neglected in molecular assessments. Genomic tools have provided resolution to deep cladogenic events but generating large numbers of transcriptomes/genomes is expensive and usually requires fresh material. Here we leverage a target enrichment approach to design and synthesize a probe set based on available genomes and transcriptomes across Heterobranchia. Our probe set contains 57,606 70mer baits and targets a total of 2,259 ultra-conserved elements (UCEs). Post-sequencing capture efficiency was tested against 31 marine heterobranchs from major groups, includ- ing Acochlidia, Acteonoidea, Aplysiida, Cephalaspidea, Pleurobranchida, Pteropoda, Runcinida, Sacoglossa, and Umbraculida. The combined Trinity and Velvet assemblies recovered up to 2,211 UCEs in Tectipleura and up to 1,978 in Nudipleura, the most distantly related taxon to our core study group. Total alignment length was 525,599 bp and contained 52% informative sites and 21% missing data. Maximum-likelihood and Bayesian inference approaches recovered the monophyly of all orders tested as well as the larger clades Nudipleura, Panpulmonata, and Euopisthobranchia. The successful enrichment of diversely preserved material and DNA concentrations demonstrate the polyvalent nature of UCEs, and the universality of the probe set designed. We believe this probe set will enable multiple, interesting lines of research, that will benefit from an inexpensive and largely informative tool that will, additionally, benefit from the access to museum collections to gather genomic data. -
Gastropoda, Euthyneura: Umbraculidae) in the Mediterranean
BASTERIA, 51: 63-65, 1987 Spiricella unguiculus Rang, 1827 (Gastropoda, Euthyneura: Umbraculidae) in the Mediterranean F. Carrozza Villa II Poggio, 1-56030 Soiana (Pisa), Italy & R. Rocchini Via Don Bosco 15, 1-51100 Pistoia, Italy Shells of Spiricella unguiculus are reported from two localities in the Mediterranean, viz. Tuscan south of (1) Italy, coast Livorno, and (2) Tunisia, island ofDjerba. At each locality fresh shell found. S. described from Miocene only a single was unguiculus, originally deposits, has only recently been recorded as an extant species from southern Portugal, Algarve (Hoeksema & Janssen, 1984). Key words: Gastropoda, Opisthobranchia, Umbraculidae, Spiricella unguiculus, distribution, Mediterranean, Italy, Tunisia. Following the publication ofthe finding of a dead but apparently Recent specimen of the southern Atlantic of Spiricella unguiculus Rang, 1827, on coast Portugal by Hoeksema & Janssen (1984), the present authors now report that two more Recent shells of this species have been found, both along the coasts of the Mediterranean. One specimen (fig. 1) was obtained in the bay of Baratti, south ofLivorno (Italy), by dredg- ing on a muddy bottom at a depth of about 30 m; this shell measures 4.0 x 1.8 mm. The second specimen (fig. 2) was collected on the coast of the island of Djerba in Tunisia; this shell measures2.2 x 1.0 mm. The two shells have been collected without the animals or the periostracum, but in excellent condition. The shells are largely sheen around the ventral All this leads transparent, exhibiting a vague pearly margin. us to believe that these shells may be considered Recent specimens.