Homozygous Mutations in LPIN2 Are Responsible for the Syndrome Of

Total Page:16

File Type:pdf, Size:1020Kb

Homozygous Mutations in LPIN2 Are Responsible for the Syndrome Of 551 ORIGINAL ARTICLE Homozygous mutations in LPIN2 are responsible for the syndrome of chronic recurrent multifocal osteomyelitis and congenital dyserythropoietic anaemia (Majeed syndrome) P J Ferguson, S Chen, M K Tayeh, L Ochoa, S M Leal, A Pelet, A Munnich, S Lyonnet, H A Majeed, H El-Shanti ............................................................................................................................... J Med Genet 2005;42:551–557. doi: 10.1136/jmg.2005.030759 Background: Majeed syndrome is an autosomal recessive, autoinflammatory disorder characterised by chronic recurrent multifocal osteomyelitis and congenital dyserythropoietic anaemia. The objectives of this study were to map, identify, and characterise the Majeed syndrome causal gene and to speculate on its function and role in skin and bone inflammation. Methods: Six individuals with Majeed syndrome from two unrelated families were identified for this study. See end of article for Homozygosity mapping and parametric linkage analysis were employed for the localisation of the gene authors’ affiliations ....................... responsible for Majeed syndrome. Direct sequencing was utilised for the identification of mutations within the genes contained in the region of linkage. Expression studies and in silico characterisation of the Correspondence to: Hatem El-Shanti, University identified causal gene and its protein were carried out. of Iowa Hospital, 2615 Results: The phenotype of Majeed syndrome includes inflammation of the bone and skin, recurrent fevers, JCP, 200 Hawkins Drive, and dyserythropoietic anaemia. The clinical picture of the six affected individuals is briefly reviewed. The Iowa City, IA 52242, USA; gene was mapped to a 5.5 cM interval (1.8 Mb) on chromosome 18p. Examination of genes in this hatem-el-shanti@uiowa. edu interval led to the identification of homozygous mutations in LPIN2 in affected individuals from the two families. LPIN2 was found to be expressed in almost all tissues. The function of LPIN2 and its role in Received 5 January 2005 inflammation remains unknown. Revised version received Conclusions: We conclude that homozygous mutations in LPIN2 result in Majeed syndrome. 16 February 2005 Accepted for publication Understanding the aberrant immune response in this condition will shed light on the aetiology of other 18 February 2005 inflammatory disorders of multifactorial aetiology including isolated chronic recurrent multifocal ....................... osteomyelitis, Sweet syndrome, and psoriasis. ultifactorial disorders, such as psoriasis and inflam- parents, suggesting autosomal recessive inheritance.81516 A matory bowel disease, result from complex interac- published article reports one monozygotic twin pair con- tions between a number of predisposing factors, cordant for CRMO and a second monozygotic twin pair with M 17 including genotypes at one or more loci and a variety of CRMO diagnosed in one twin and PPP in the other. In the environmental exposures that trigger, accelerate, or exacer- same article, the authors report a child with CRMO whose bate the disease process. There are several approaches to the father has developed chronic non-infectious osteomyelitis of identification of aetiologic genetic factors in a complex the sternum as an adult, suggesting autosomal dominant disease, such as genome-wide linkage and association studies inheritance with variable expression. Also, it has been or targeted examination of a specific gene or region. In the recently shown through an association study that there is a latter approach, the specific gene that is targeted in a study is susceptibility locus for isolated CRMO on chromosome chosen due to its physiologic role, its presence in a 18q21.3–22.17 Furthermore, there is a similar murine disorder chromosomal break point, or its causal role in a Mendelian (chronic multifocal osteomyelitis), resulting from a recessive disorder sharing a similar phenotype. The exploration of the mutation in a gene mapped to a region on mouse chromo- role of a rare Mendelian disorder gene in a more common some 18, which is homologous to the human region disorder that shares a phenotype with the Mendelian containing the CRMO susceptibility locus.18 19 disorder has proven successful on multiple occasions, such The high prevalence of consanguinity among Jordanians as in WFS1 and deafness,1 IRF6 and cleft lip and/or palate,2 makes it possible to identify inbred families with rare and rare variations in ABCA1, APOA, and LCAT and low recessive disorders that are large enough to independently plasma levels of HDL cholesterol.3 establish linkage.20–22 In these families, individuals with rare Chronic recurrent multifocal osteomyelitis (CRMO; recessive traits are likely to have inherited both copies of the MIM 259680) was clinically described in 1970, but it became mutated gene from a common ancestor and are thus identical recognised as a separate clinical entity in 1972.45CRMO is an by descent (homozygous) not only at the trait locus but also autoinflammatory disorder, that is, it is characterised by at neighbouring marker loci. seemingly unprovoked inflammation in the absence of The syndrome of CRMO and congenital dyserythropoietic autoimmunity or infectious causes. It is frequently associated anaemia (CDA), or Majeed syndrome, is a rare autosomal with a cutaneous inflammatory condition such as pustulosis recessive disorder first described in 1989.23 It is composed of palmoplantaris (PPP),6–8 Sweet syndrome,9–11 and psoriasis.12–14 three prominent features: CRMO, CDA, and an inflammatory Although CRMO usually occurs sporadically, several obser- vations point to a genetic component to its aetiology. There Abbreviations: CDA, congenital dyserythropoietic anaemia; CRMO, are at least three reports of affected siblings with normal chronic recurrent multifocal osteomyelitis; PPP, pustulosis palmoplantaris www.jmedgenet.com 552 Ferguson, Chen, Tayeh, et al dermatosis.23–25 Majeed syndrome has been described only in www.ncbi.nlm.nih.gov; http://genome.ucsc.edu; http:// two families, although two reported sporadic cases have a www.ensembl.org). We prioritised the genes in the region similar phenotype.26 27 The CRMO starts in infancy and according to their likelihood for producing the phenotype of continues relentlessly leading to retarded growth or joint Majeed syndrome, as follows: TGIF, HEC (KNTC2), EMILIN2, contractures or both.23–25 The CDA is variable in severity and LPIN2, METTL4. The remaining six genes were tissue specific characterised by microcytosis, both peripherally and in the (muscle or neuronal tissue) or the predicted function could bone marrow, which is not typical of any of the well not be logically related to the phenotype. The genomic characterised and classified forms of CDA.23–25 The neutro- sequences of the candidate genes were obtained from the philic dermatosis, Sweet syndrome, is the common reported genome databases and the primer pairs were designed to skin inflammation.23 Our group has previously reported six amplify the exons and the splice sites of the genes using the individuals with Majeed syndrome from three sibships from Primer3 program (http://frodo.wi.mit.edu/cgi-bin/primer3/ two unrelated families.23–25 The gene responsible for this primer3_www.cgi). The PCR amplification products were complex syndrome was mapped to a 5.5 cM interval on the run on an agarose gel, and the bands containing the short arm of chromosome 18. We then identified that amplified products were recovered and extracted from the homozygous mutations in LPIN2 are responsible for Majeed agarose by column purification. The amplified products were syndrome. sequenced using an automated ABI sequencer with dye terminator chemistry. Sequencing was performed for an METHODS obligate carrier and an affected individual from family A, an Subjects affected individual from family B, and a normal unrelated We identified a family from Jordan with four affected control. Once a mutation was identified in family A, the same individuals. A detailed family history was obtained and a exon was sequenced in all family members to see if it four generation pedigree was constructed (fig 1). The family segregated with both the phenotype and haplotype. We then members who agreed to participate in this study are four screened the control populations by both SSCP analysis and affected individuals and seven of their relatives (family A). A sequencing of suspicious bands. For family B, we sequenced second family with two affected individuals in one sibship the exon that carried the mutation in the other affected and first cousin parents was identified, but only the affected individual and developed an SSCP assay to screen the control individuals participated in the study (family B). Informed populations for that mutation. The sequences of the primers consent, approved by a local (Jordanian) institutional review used for the amplification of the exons and for the SSCP board, was provided by the participants or their legal analysis are included in the supplementary material which is guardian. We obtained 1064 controls from the HGDP-CEPH available at http://jmedgenet.com/supplemental. Human Genome Diversity Cell Line Panel,28 an additional 86 unrelated CEPH controls, and 367 anonymous Jordanian Structure of LPIN2 and its transcript control DNA samples. The structure of LPIN2 was obtained from the public genomic databases (D87436; NM_014646). Five human overlapping Genotyping cDNA clones covering the entire cDNA of LPIN2 were DNA was extracted
Recommended publications
  • (12) Patent Application Publication (10) Pub. No.: US 2002/0152483 A1 Reue Et Al
    US 2002O1524.83A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2002/0152483 A1 Reue et al. (43) Pub. Date: Oct. 17, 2002 (54) NOVEL GENE ASSOCATED WITH Publication Classification REGULATION OF ADPOSITY AND INSULIN RESPONSE (51) Int. Cl." ............................ A01K 67/00; C12O 1/68; C12P 19/34 (75) Inventors: Karen Reue, Torrance, CA (US); (52) U.S. Cl. .................................. 800/9; 435/6; 435/91.2 Miklos Peterfy, Los Angeles, CA (US) (57) ABSTRACT Correspondence Address: This invention pertains to the identification and isolation of LAW OFFICES OF JONATHAN ALAN QUINE a gene implicated in the fatty liver dystrophy (fld) pheno PO BOX 458 type. Mouse and human forms of the novel gene, designated ALAMEDA, CA 94501 herein as Lpin1/LPIN1 (mouse and human genes, respec tively), are identified. This invention additionally provides (73) Assignee: The Regents of the University of Cali methods of Screening for agents that alter adipose tissue fornia development. The methods involve contacting a cell con taining a Lpin1 gene With a test agent, and detecting a (21) Appl. No.: 10/028,056 change in the expression or activity of a Lpin1 gene product, (22) Filed: Dec. 19, 2001 where a difference in the expression or activity of Lpin1 in the contacted cell indicates that the agent alters or is likely Related U.S. Application Data to alter adipose tissue development. Also provided are methods of identifying Lpin1 mutations, and methods of (60) Provisional application No. 60/257,772, filed on Dec. mitigating Symptoms of lipodystrophy, obesity, diabetes, 22, 2000. atherOSclerosis and related pathologies.
    [Show full text]
  • 1 First Presentation of LPIN1 Acute Rhabdomyolysis in Adolescence and Adulthood
    Manuscript File Click here to view linked References 1 First presentation of LPIN1 acute rhabdomyolysis in adolescence and adulthood 2 3 Chiara Pizzamiglioa, Nayana Lahirib, Niranjanan Nirmalananthanc, Bhrigu Soodd, Subash 4 Somalankad, Philip Ostrowskie, Rahul Phadkef, Dominic Gerard O’Donovang, Francesco 5 Muntonih, Rosaline Quinlivana 6 7 a. MRC Centre for Neuromuscular Diseases, UCL Institute of Neurology and National Hospital for 8 Neurology and Neurosurgery, Queen Square, London, United Kingdom 9 10 b. Clinical Genetics Department, St George's University Hospitals NHS Foundation Trust, London, 11 United Kingdom 12 13 c. Departments of Neurology and Neuroradiology, Atkinson Morley Regional Neurosciences 14 Centre, St George's Hospital, London, United Kingdom 15 16 d. South West Thames Renal & Transplantation Unit and South West Thames Institute for Renal 17 Research, Saint Helier Hospital, Carshalton, Surrey, United Kingdom 18 19 e. South West Thames Regional Genetics Service, St George's University NHS Foundation Trust, 20 London, United Kingdom 21 22 f. Division of Neuropathology, Dubowitz Neuromuscular Centre, UCL Great Ormond Street 23 Hospital for Children, United Kingdom; Division of Neuropathology, National Hospital for 24 Neurology and Neurosurgery, Queen Square, London, United Kingdom 25 1 26 g. Neuropathology, Department of Histopathology, Addenbrooke’s Hospital, Cambridge University 27 Hospitals NHS Foundation Trust, Cambridge, United Kingdom 28 29 h. Paediatric Neurology, Dubowitz Neuromuscular Centre, UCL Institute of Child Health and Great 30 Ormond Street Hospital for Children, London, United Kingdom 31 32 Corresponding author: Chiara Pizzamiglio ([email protected]) 33 34 Abstract: LPIN1 mutations are a known common cause of autosomal recessive, recurrent and life- 35 threatening acute rhabdomyolysis of childhood-onset.
    [Show full text]
  • Genetic Effects of LPIN1 Polymorphisms on Milk Production Traits in Dairy Cattle
    G C A T T A C G G C A T genes Article Genetic Effects of LPIN1 Polymorphisms on Milk Production Traits in Dairy Cattle Bo Han 1, Yuwei Yuan 1, Ruobing Liang 1, Yanhua Li 2, Lin Liu 2 and Dongxiao Sun 1,* 1 Department of Animal Genetics, Breeding and Reproduction, College of Animal Science and Technology, Key Laboratory of Animal Genetics, Breeding and Reproduction of Ministry of Agriculture and Rural Affairs, National Engineering Laboratory for Animal Breeding, China Agricultural University, Beijing 100193, China; [email protected] (B.H.); [email protected] (Y.Y.); [email protected] (R.L.) 2 Beijing Dairy Cattle Center, Qinghe’nanzhen Deshengmenwai Street, Chaoyang District, Beijing 100192, China; [email protected] (Y.L.); [email protected] (L.L.) * Correspondence: [email protected] Received: 12 March 2019; Accepted: 28 March 2019; Published: 2 April 2019 Abstract: Our initial RNA sequencing work identified that lipin 1 (LPIN1) was differentially expressed during dry period, early lactation, and peak of lactation in dairy cows, and it was enriched into the fat metabolic Gene Ontology (GO) terms and pathways, thus we considered LPIN1 as the candidate gene for milk production traits. In this study, we detected the polymorphisms of LPIN1 and verified their genetic effects on milk yield and composition in a Chinese Holstein cow population. We found seven SNPs by re-sequencing the entire coding region and partial flanking region of LPIN1, including one in 50 flanking region, four in exons, and two in 30 flanking region. Of these, four SNPs, c.637T > C, c.708A > G, c.1521C > T, and c.1555A > C, in the exons were predicted to result in the amino acid replacements.
    [Show full text]
  • Low-Fat Clues to Obesity More
    RESEARCH HIGHLIGHTS WEB WATCH OBESITY LocusLink — is there life after death? By the time you read this, NCBI’s LocusLink will be no Low-fat clues to obesity more. As of 1 March 2005, it will have been replaced by NCBI’s Entrez Gene. A new insight into the pathways expression predisposed the mice to Born in 1999, LocusLink involved in obesity has come from obesity. However, whereas the has served the genetic community well. It was a surprising source — studies of skeletal-muscle transgenics created to help manage and extremely skinny mice. became obese even on a stan- access increasing amounts Mice that lack a functional Lpin1 dard diet, mice that overex- of sequence data and web gene develop a condition that is pressed Lpin1 in adipose resources. The first known as lipodystrophy, which tissue only put on excess 1 publication to describe it is characterized by a severe lack of weight when they were refers to it as a “web directory” that “provides a adipose tissue. The lipin protein that fed a high-fat diet, indi- single point-of-access to a is encoded by this gene is expressed in cating an important envi- variety of gene-specific adipose tissue and skeletal muscle, ronmental contribution, information sources including and the lack of fatty tissue in lipin- which is reminiscent of web resources and RefSeq”. deficient mice is caused by a failure of human obesity. Throughout its life, adipocytes to differentiate. Jack Phan The authors then LocusLink was continuously updated to inform us not only and Karen Reue had previously shown showed that the causes of about the sequence and that lipin deficiency prevents mice excessive weight gain associ- function of an increasing from becoming obese, and that this ated with increased lipin levels number of species but also works both for mice that are overfed were mediated by different path- about the correct gene and those that are genetically predis- ways in the two types of transgenic nomenclature.
    [Show full text]
  • Table S1. 103 Ferroptosis-Related Genes Retrieved from the Genecards
    Table S1. 103 ferroptosis-related genes retrieved from the GeneCards. Gene Symbol Description Category GPX4 Glutathione Peroxidase 4 Protein Coding AIFM2 Apoptosis Inducing Factor Mitochondria Associated 2 Protein Coding TP53 Tumor Protein P53 Protein Coding ACSL4 Acyl-CoA Synthetase Long Chain Family Member 4 Protein Coding SLC7A11 Solute Carrier Family 7 Member 11 Protein Coding VDAC2 Voltage Dependent Anion Channel 2 Protein Coding VDAC3 Voltage Dependent Anion Channel 3 Protein Coding ATG5 Autophagy Related 5 Protein Coding ATG7 Autophagy Related 7 Protein Coding NCOA4 Nuclear Receptor Coactivator 4 Protein Coding HMOX1 Heme Oxygenase 1 Protein Coding SLC3A2 Solute Carrier Family 3 Member 2 Protein Coding ALOX15 Arachidonate 15-Lipoxygenase Protein Coding BECN1 Beclin 1 Protein Coding PRKAA1 Protein Kinase AMP-Activated Catalytic Subunit Alpha 1 Protein Coding SAT1 Spermidine/Spermine N1-Acetyltransferase 1 Protein Coding NF2 Neurofibromin 2 Protein Coding YAP1 Yes1 Associated Transcriptional Regulator Protein Coding FTH1 Ferritin Heavy Chain 1 Protein Coding TF Transferrin Protein Coding TFRC Transferrin Receptor Protein Coding FTL Ferritin Light Chain Protein Coding CYBB Cytochrome B-245 Beta Chain Protein Coding GSS Glutathione Synthetase Protein Coding CP Ceruloplasmin Protein Coding PRNP Prion Protein Protein Coding SLC11A2 Solute Carrier Family 11 Member 2 Protein Coding SLC40A1 Solute Carrier Family 40 Member 1 Protein Coding STEAP3 STEAP3 Metalloreductase Protein Coding ACSL1 Acyl-CoA Synthetase Long Chain Family Member 1 Protein
    [Show full text]
  • Deciphering Genetic Associations Using Genome-Wide Epigenomics Approaches
    Deciphering genetic associations using genome-wide epigenomics approaches by Xinchen Wang B.Sc. Biochemistry University of Toronto, 2011 Submitted to the Department of Biology in Partial Fulfillment of the Requirements for the Degree of DOCTOR OF PHILOSOPHY at the MASSACHUSETTS INSTITUTE OF TECHNOLOGY June 2017 © Massachusetts Institute of Technology 2017. All rights reserved Signature of Author ......................................................................................................................... Xinchen Wang Department of Biology May 26, 2017 Certified by ........................................................................................................................................ Manolis Kellis Professor of Computer Science Thesis Advisor Certified by ........................................................................................................................................ Laurie A. Boyer Associate Professor of Biology Thesis Advisor Accepted by ....................................................................................................................................... Amy E. Keating Professor of Biology Co-Chair, Biology Graduate Committee 2 Deciphering genetic associations using genome-wide epigenomics approaches . by . Xinchen Wang Submitted to the Department of Biology on May 26, 2017 in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy in Biology Abstract Genetic mapping of the drivers of complex human phenotypes and disease through the genome-wide
    [Show full text]
  • A Genetic Investigation of the Muscle and Neuronal Channelopathies: from Sanger to Next – Generation Sequencing
    A Genetic Investigation of the Muscle and Neuronal Channelopathies: From Sanger to Next – Generation Sequencing Alice Gardiner MRC Centre for Neuromuscular Diseases and UCL Institute of Neurology Supervised by Professor Henry Houlden and Professor Mike Hanna 1 Declaration I, Alice Gardiner, confirm that the work presented in this thesis is my own. Where information has been derived from other sources, I confirm that this has been indicated in the thesis. Signature A~~~ . Date ~.'t..J.q~ l.?,.q.l.~ . 2 Abstract The neurological channelopathies are a group of hereditary, episodic and frequently debilitating diseases often caused by dysfunction of voltage-gated ion channels. This thesis reports genetic studies of carefully clinically characterised patient cohorts with different episodic neurological and neuromuscular disorders including paroxysmal dyskinesias, episodic ataxia, periodic paralysis and episodic rhabdomyolysis. Genetic and clinical heterogeneity has in the past, using traditional Sanger sequencing methods, made genetic diagnosis difficult and time consuming. This has led to many patients and families being undiagnosed. Here, different sequencing technologies were employed to define the genetic architecture in the paroxysmal disorders. Initially, Sanger sequencing was employed to screen the three known paroxysmal dyskinesia genes in a large cohort of paroxysmal movement disorder patients and smaller mixed episodic phenotype cohort. A genetic diagnosis was achieved in 39% and 13% of the cohorts respectively, and the genetic and phenotypic overlap was highlighted. Subsequently, next-generation sequencing panels were developed, for the first time in our laboratory. Small custom-designed amplicon-based panels were used for the skeletal muscle and neuronal channelopathies. They offered considerable clinical and practical benefit over traditional Sanger sequencing and revealed further phenotypic overlap, however there were still problems to overcome with incomplete coverage.
    [Show full text]
  • Evaluating the Role of LPIN1 Variation in Insulin Resistance, Body Weight, and Human Lipodystrophy in U.K
    ORIGINAL ARTICLE Evaluating the Role of LPIN1 Variation in Insulin Resistance, Body Weight, and Human Lipodystrophy in U.K. Populations Katherine A. Fawcett,1 Neil Grimsey,2 Ruth J.F. Loos,3 Eleanor Wheeler,1 Allan Daly,1 Maria Soos,4 Robert Semple,4 Holly Syddall,5 Cyrus Cooper,5 Symeon Siniossoglou,2 Stephen O’Rahilly,4 Nicholas J. Wareham,3 and Ineˆs Barroso1 OBJECTIVE—Loss of lipin 1 activity causes lipodystrophy and insulin resistance in the fld mouse, and LPIN1 expression and common genetic variation were recently suggested to influence ipin 1, a multifunctional protein highly expressed adiposity and insulin sensitivity in humans. We aimed to conduct in mouse and human adipose tissue, has been a comprehensive association study to clarify the influence of shown to influence adipose tissue development common LPIN1 variation on adiposity and insulin sensitivity in Land function. Null mutations in the murine lipin 1 U.K. populations and to examine the role of LPIN1 mutations in gene (Lpin1) result in impaired adipocyte differentiation insulin resistance syndromes. leading to a severe reduction in adipose tissue mass, RESEARCH DESIGN AND METHOD—Twenty-two single nu- insulin resistance, and progressive peripheral neuropathy 2J cleotide polymorphisms tagging common LPIN1 variation were in the fld and fld mouse models (1). In contrast, trans- genotyped in Medical Research Council (MRC) Ely (n ϭ 1,709) genic mice with adipose tissue–specific overexpression of and Hertfordshire (n ϭ 2,901) population-based cohorts. LPIN1 Lpin1 exhibit diet-induced obesity and enhanced insulin exons, exon/intron boundaries, and 3Ј untranslated region were sensitivity compared with those seen in wild-type litter- sequenced in 158 patients with idiopathic severe insulin resis- mates (2).
    [Show full text]
  • No Pain, No Gain: a Case of Exercise-Induced Rhabdomyolysis
    No pain, no gain: a case of exercise-induced rhabdomyolysis Kavitha T. Karnik, M.D. , Fellow, Clinical Neurophysiology Suur Biliciler, M.D., Neuromuscular Medicine University of Texas Health Science Center- McGovern Medical School, Houston, TX Carrell-Krusen Neuromuscular Conference, Dallas, TX February 22, 2018 Case presentation ✤A 26 year old male presented to neuromuscular clinic for further evaluation of hyperCKemia and possible myopathy. ✤During childhood, he had 2 episodes of muscle stiffness: ✤ Generalized stiffness during a hospitalization for a respiratory infection at age 2. ✤ Brief, mild stiffness of his upper extremities following water rafting at age 10. ✤He reported having had an extensive neurogenetic workup, including muscle and skin biopsies with no conclusive diagnosis. ✤Otherwise, he was asymptomatic in childhood and had remained very active throughout his life. ✤During routine checks, he would have elevated CK and transaminases. ✤He denied episodes of myalgia or dark urine. ✤ Past medical history: as above ✤ Past surgical history: right shoulder arthroscopy 2012 ✤ Medications: none ✤ Allergies: NKA ✤ Family history: Dementia, stroke; no h/o NM disease ✤ Social history: works as a landman- oil and gas; social alcohol consumption, no tobacco or illicit drug use ✤ ROS: fatigue, anxiety ✤ Neurologic exam: unremarkable Initial diagnostic testing ✤Lab studies: Pyruvate, lactic acid, acylcarnitine, free fatty acids, urine organic acids, plasma amino acids, and transaminases (GGT, AST, ALT) all unremarkable ✤ CK persistently elevated: 3580 at initial visit; 448 when checked 1 month later ✤EMG/NCV ✤Unable to obtain previous biopsy slides from childhood Follow-up ✤ 6 months later, he experienced severe low back pain after an intense cross-fit exercise workout.
    [Show full text]
  • Citgenedb: a Comprehensive Database of Human and Mouse
    bioRxiv preprint doi: https://doi.org/10.1101/250514; this version posted February 4, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. CITGeneDB: A comprehensive database of human and mouse genes enhancing or suppressing cold-induced thermogenesis validated by perturbation experiments in mice Jin Li1,2, Su-Ping Deng1,2, Gang Wei3, Peng Yu1,2,* 1Department of Electrical and Computer Engineering & 2TEES-AgriLife Center for Bioinformatics and Genomic Systems Engineering, Texas A&M University, College Station, TX 77843, USA. 3Shanghai Key Laboratory of Diabetes, Shanghai Institute for Diabetes, Shanghai Clinical Medical Centre of Diabetes, Shanghai Key Clinical Centre of Metabolic Diseases, Department of Endocrinology and Metabolism, Shanghai Jiao-Tong University Affiliated Sixth People’s Hospital, Shanghai 200233, China. *Corresponding author. E-mail: [email protected] Abstract Cold-induced thermogenesis increases energy expenditure and can reduce body weight in mammals, so the genes involved in it are thought to be potential therapeutic targets for treating obesity and diabetes. In the quest for more effective therapies, a great deal of research has been conducted to elucidate the regulatory mechanism of cold-induced thermogenesis. Over the last decade, a large number of genes that can enhance or suppress cold-induced thermogenesis have been discovered, but a comprehensive list of these genes is lacking. To fill this gap, we examined all of the annotated human and mouse genes and curated those demonstrated to enhance or suppress cold-induced thermogenesis by in vivo or ex vivo experiments in mice.
    [Show full text]
  • Essential Amino Acid Ratios and Mtor Affect Lipogenic Gene Networks And
    Li et al. Journal of Animal Science and Biotechnology (2016) 7:44 DOI 10.1186/s40104-016-0104-x RESEARCH Open Access Essential amino acid ratios and mTOR affect lipogenic gene networks and miRNA expression in bovine mammary epithelial cells Shanshan Li1, Afshin Hosseini2, Marina Danes3, Carolina Jacometo4, Jianxin Liu1* and Juan J. Loor2* Abstract Background: The objective of this study was to study how changing the ratio of Lys to Thr, Lys to His, and Lys to Val affects the expression of lipogenic genes and microRNA (miRNA) in bovine mammary epithelial cells. Results: Triplicate cultures with the respective “optimal” amino acid (AA) ratio (OPAA = Lys:Met 2.9:1; Thr:Phe 1.05:1; Lys:Thr 1.8:1; Lys:His 2.38:1; Lys:Val 1.23:1) plus rapamycin (OPAARMC; positive control), OPAA, Lys:Thr 2.1:1 (LT2.1), Lys:Thr 1.3:1 (LT1.3), Lys:His 3.05:1 (LH3.0), or Lys:Val 1.62:1 (LV1.6) were incubated in lactogenic medium for 12 h. The expression of 15 lipogenic genes and 7 miRNA were evaluated. Responses to LT2.1, LT1.3, LH3.0, and LV1.6 relative to the control (OPAARMC) included up-regulated expression of ACSS2, FABP3, ACACA, FASN, SCD, LPIN1, INSIG1, SREBF1, PPARD, and NR1H3 (commonly known as LXR-α). Furthermore, LV1.6 up-regulated expression of ACSL1, DGAT1, and RXRA and down-regulated PPARG expression. Although no effect of OPAA on expression of PPARG was observed, compared with the control, OPAA up-regulated expression of the PPAR targets ACSS2, FABP3, ACACA, FASN, SCD, LPIN1, INSIG1, and SREBF1.
    [Show full text]
  • LPIN2 Is Associated with Type 2 Diabetes, Glucose Metabolism and Body Composition
    Diabetes Publish Ahead of Print, published online September 5, 2007 LPIN2 is associated with type 2 diabetes, glucose metabolism and body composition Yurii S. Aulchenko,1,* Jan Pullen,2 Wigard P. Kloosterman,3 Mojgan Yazdanpanah,1 Albert Hofman,1 Norbert Vaessen,1 Pieter J. L. M. Snijders,1 Dmitry Zubakov,1 Ian Mackay,2,* Mark Olavesen,2 Balbinder Sidhu,2 Vicki E. Smith,2 Alisoun Carey,2 Eugene Berezikov,3 André G. Uittenlinden,4 Ronald H. A. Plasterk,3 Ben A. Oostra1, and Cornelia M. van Duijn1 1Genetic Epidemiology Unit, Department of Epidemiology & Biostatistics, Clinical Genetics, and Forensic Molecular Biology, Erasmus MC Rotterdam, 3000 CA, The Netherlands, 2Oxagen Limited, Abingdon, Oxfordshire, OX14 4RY, United Kingdom, 3Hubrecht Laboratory, Netherlands Institute for Developmental Biology, 3584 CT Utrecht, The Netherlands and 4Department of Internal Medicine, Erasmus MC Rotterdam, 3000 CA, The Netherlands *Present address: National Institute of Agricultural Botany, Cambridge CB3 0LE, UK *To whom correspondence should be addressed: Yurii S. Aulchenko Department of Epidemiology & Biostatistics, Erasmus MC Rotterdam, Postbus 2040, 3000 CA Rotterdam, The Netherlands e-mail: [email protected] Received for publication 11 March 2007 and accepted in revised form 26 August 2007. Additional information for this article can be found in an online appendix at http://diabetes.diabetesjournals.org. Copyright American Diabetes Association, Inc., 2007 ABSTRACT Objective: To identify type 2 diabetes (T2D) gene located at the chromosome 18p11. Research design and methods: We investigated the region in a young genetically isolated population by genotyping 34 single-nucleotide polymorphisms (SNPs) in 78 cases and 101 controls. Two SNPs were selected and followed up in two cohorts.
    [Show full text]