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Stabilization and Destabilization of Soil Organic Matter: Mechanisms and Controls
13F7H GEODERLIA ELSEVIER Geoderma 74 (1996) 65-105 • Stabilization and destabilization of soil organic matter: mechanisms and controls Phillip Sollins, Peter Homann, Bruce A. Caldwell Department of Forest Science Oregon State University Corvallis, OR 97331, USA Receed 1 December 1993; revised 26 July 1995; accepted 3 April 1996 Abstract We present a conceptual model of the processes by which plant leaf and root litter is transformed to soil organic C and CO 2. Stabilization of a portion of the litter C yields material that resists further transformation; destabilization yields material that is more susceptible to microbial respiration. Stability of the organic C is viewed as resulting from three general sets of characteristics. Recalcitrance comprises, molecular-level characteristics of organic substances, including elemental composition, presence of functional groups, and molecular conformation, that influence their degradation by microbes and enzymes. Interactions refers to the inter-molecular interactions between organics and either inorganic substances or other organic substances that alter the rate of degradation of those organics or synthesis of new organics. Accessibility refers to the location of organic substances with respect to microbes and enzymes. Mechanisms by which these three characteristics change through time are reviewed along with controls on those mechanisms. This review suggests that the following changes in the study of soil organic matter dynamics would speed progress: (1) increased effort to incorporate results -
The Hidden Ecological Resource of Andic Soils in Mountain Ecosystems: Evidence from Italy
Solid Earth, 9, 63–74, 2018 https://doi.org/10.5194/se-9-63-2018 © Author(s) 2018. This work is distributed under the Creative Commons Attribution 4.0 License. The hidden ecological resource of andic soils in mountain ecosystems: evidence from Italy Fabio Terribile1,2, Michela Iamarino1, Giuliano Langella1, Piero Manna2,3, Florindo Antonio Mileti1, Simona Vingiani1,2, and Angelo Basile2,3 1Department of Agricultural Sciences, University of Naples Federico II, Via Università 100, 80055 Portici (Naples), Italy 2CRISP, Interdepartmental Research Centre on the Earth Critical Zone, University of Naples Federico II, Via Università 100, 80055 Portici (Naples), Italy 3Institute for Mediterranean Agricultural and Forestry Systems, National Research Council of Italy, Via Patacca 85, 80056 Ercolano (Naples), Italy Correspondence: Fabio Terribile ([email protected]) Received: 9 June 2017 – Discussion started: 9 August 2017 Revised: 1 November 2017 – Accepted: 20 November 2017 – Published: 31 January 2018 Abstract. Andic soils have unique morphological, physical, 1 Introduction and chemical properties that induce both considerable soil fertility and great vulnerability to land degradation. More- Andic soils (i.e. soils with evident andosolization process) over, they are the most striking mineral soils in terms of are known to have a unique set of morphological, physi- large organic C storage and long C residence time. This is cal, and chemical soil properties. Andosolization (Ugolini especially related to the presence of poorly crystalline clay et al., 1988; Shoji et al., 1993) is a major soil-forming pro- minerals and metal–humus complexes. Recognition of andic cess regardless of whether these soils meet or do not meet soils is then very important. -
Diagnostic Horizons
Exam III Wednesday, November 7th Study Guide Posted Tomorrow Review Session in Class on Monday the 4th Soil Taxonomy and Classification Diagnostic Horizons Epipedons Subsurface Mollic Albic Umbric Kandic Ochric Histic Argillic Melanic Spodic Plaggen Anthropic Oxic 1 Surface Horizons: Mollic- thick, dark colored, high %B.S., structure Umbric – same, but lower B.S. Ochric – pale, low O.M., thin Histic – High O.M., thick, wet, dark Sub-Surface Horizons: Argillic – illuvial accum. of clay (high activity) Kandic – accum. of clay (low activity) Spodic – Illuvial O.M. accumulation (Al and/or Fe) Oxic – highly weathered, kaolinite, Fe and Al oxides Albic – light colored, elluvial, low reactivity Elluviation and Illuviation Elluviation (E horizon) Organic matter Clays A A E E Bh horizon Bt horizon Bh Bt Spodic horizon Argillic horizon 2 Soil Taxonomy Diagnostic Epipedons Diagnostic Subsurface horizons Moisture Regimes Temperature Regimes Age Texture Depth Soil Taxonomy Soil forming processes, presence or Order Absence of major diagnostic horizons 12 Similar genesis Suborder 63 Grasslands – thick, dark Great group 250 epipedons High %B.S. Sub group 1400 Family 8000 Series 19,000 Soil Orders Entisols Histosols Inceptisols Andisols Gelisols Alfisols Mollisols Ultisols Spodosols Aridisols Vertisols Oxisols 3 Soil Orders Entisol Ent- Recent Histosol Hist- Histic (organic) Inceptisol Incept- Inception Alfisol Alf- Nonsense Ultisol Ult- Ultimate Spodosol Spod- Spodos (wood ash) Mollisol Moll- Mollis (soft) Oxisol Ox- oxide Andisol And- Ando (black) Gelisol -
Biotechnological Applications of the Sepiolite Interactions with Bacteria
Biotechnological applications of the sepiolite interactions with bacteria: Bacterial transformation and DNA extraction Fidel Antonio Castro-Smirnov, Olivier Pietrement, Pilar Aranda, Eric Le Cam, Eduardo Ruiz-Hitzky, Bernard Lopez To cite this version: Fidel Antonio Castro-Smirnov, Olivier Pietrement, Pilar Aranda, Eric Le Cam, Eduardo Ruiz- Hitzky, et al.. Biotechnological applications of the sepiolite interactions with bacteria: Bacte- rial transformation and DNA extraction. Applied Clay Science, Elsevier, 2020, 191, pp.105613. 10.1016/j.clay.2020.105613. hal-02565762 HAL Id: hal-02565762 https://hal.archives-ouvertes.fr/hal-02565762 Submitted on 6 May 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. 1 Biotechnological applications of the sepiolite interactions with 2 bacteria: bacterial transformation and DNA extraction 3 Fidel Antonio Castro-Smirnova,b, Olivier Piétrementc,d, Pilar Arandae, Eric Le Camc, 4 Eduardo Ruiz-Hitzkye and Bernard S. Lopeza,f*. 5 6 aCNRS UMR 8200, Institut de Cancérologie Gustave-Roussy, Université Paris Sud, 7 Université Paris-Saclay, Equipe Labellisée Ligue Contre le Cancer, 114 Rue Edouard 8 Vaillant, 94805 Villejuif, France. 9 bUniversidad de las Ciencias Informáticas, Carretera a San Antonio de los Baños, km 10 1⁄2, La Habana, 19370, Cuba 11 cCNRS UMR 8126, Institut de Cancérologie Gustave-Roussy, Université Paris Sud, 12 Université Paris-Saclay, 114 Rue Édouard Vaillant, 94805 Villejuif, France. -
Distribution and Classification of Volcanic Ash Soils
83 Distribution and Classification of Volcanic Ash Soils 1* 2 Tadashi TAKAHASHI and Sadao SHOJI 1 Graduate School of Agricultural Science, Tohoku University 1-1, Tsutsumidori, Amamiya-machi, Aoba-ku, Sendai, 981-8555 Japan e-mail: [email protected] 2 Professor Emeritus, Tohoku University 5-13-27, Nishitaga, Taihaku-ku, Sendai, 982-0034 Japan *corresponding author Abstract Volcanic ash soils are distributed exclusively in regions where active and recently extinct volcanoes are located. The soils cover approximately 124 million hectares, or 0.84% of the world’s land surface. While, thus, volcanic ash soils comprise a relatively small extent, they represent a crucial land resource due to the excessively high human populations living in these regions. However, they did not receive worldwide recognition among soil scientists until the middle of the 20th century. Development of international classification systems was put forth by the 1978 Andisol proposal of G. D. Smith. The central concept of volcanic ash soils was established after the finding of nonallophanic volcanic ash soils in Japan in 1978. Nowadays, volcanic ash soils are internationally recognized as Andisols in Soil Taxonomy (United States Department of Agriculture) and Andosols in the World Reference Base for Soil Resources (FAO, International Soil Reference and Information Centre and International Society of Soil Science). Several countries including Japan and New Zealand have developed their own national classification systems for volcanic ash soils. Finally correlation of the international and domestic classification systems is described using selected volcanic ash soils. Key words: Andisols, Andosols, Japanese Cultivated Soil Classification, New Zealand Soil Classification, Soil Taxonomy, World Reference Base for Soil Resources (WRB) 1. -
Iron and Aluminum Association with Microbially Processed Organic Matter Via Meso-Density Aggregate Formation Across Soils: Organo- Metallic Glue Hypothesis
https://doi.org/10.5194/soil-2020-32 Preprint. Discussion started: 11 June 2020 c Author(s) 2020. CC BY 4.0 License. Iron and aluminum association with microbially processed organic matter via meso-density aggregate formation across soils: organo- metallic glue hypothesis 5 Rota Wagai1, Masako Kajiura1, Maki Asano2 1National Agriculture and Food Research Organization, Institute for Agro-Environmental Sciences. 3-1-3 Kan-nondai, Tsukuba, Ibaraki, 305-8604, Japan 2Faculty of Life and Environmental Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8572, Japan Correspondence to: Rota Wagai ([email protected]) 10 Abstract. Global significance of iron (Fe) and aluminum (Al) for the storage of organic matter (OM) in soils and surface sediments is increasingly recognized. Yet specific metal phases involved or the mechanism behind metal-OM correlations frequently shown across soils remain unclear. We identified density fraction locations of major metal phases and OM using 23 soil samples from 5 climate zones and 5 soil orders (Andisols, Spodosols, Inceptisols, Mollisols, Ultisols), including several subsurface horizons and both natural and managed soils. Each soil was separated to 4 to 7 density fractions using sodium 15 polytungstate with mechanical shaking, followed by the sequential extraction of each fraction with pyrophosphate (PP), acid oxalate (OX), and finally with dithionite-citrate (DC) to estimate pedogenic metal phases of different solubility and crystallinity. The extractable Fe and Al concentrations (per fraction) generally showed unique unimodal distribution along particle density gradient for each soil and each extractable metal phase. Across the studied soils, the maximum metal concentrations were always at meso-density range (1.8-2.4 g cm-3) within which PP-extractable metals peaked at 0.3-0.4 g cm- 20 3 lower density range relative to OX- and DC-extractable metals. -
Soil Andic Properties As Powerful Factors Explaining Deep Soil Organic Carbon Stocks Distribution: the Case of a Coffee Agrofore
SOIL Discuss., https://doi.org/10.5194/soil-2019-14 Manuscript under review for journal SOIL Discussion started: 23 April 2019 c Author(s) 2019. CC BY 4.0 License. Soil andic properties as powerful factors explaining deep soil organic carbon stocks distribution: the case of a coffee agroforestry plantation on Andosols in Costa Rica Tiphaine Chevallier1, Kenji Fujisaki1, Olivier Roupsard1,2, Florian Guidat3, Rintaro Kinoshita3,5, Elias de 5 Melo Viginio Filho3, Peter Lehner4, Alain Albrecht1 1 Eco&Sols, IRD, CIRAD, INRA, Montpellier SupAgro, Univ Montpellier, Montpellier, France 2 CIRAD, UMR Eco&Sols, LMI IESOL, B.P. 1386 CP 18524, Dakar, Senegal 3 CATIE, Tropical Agricultural Centre for Research and Higher Education, 7170 Turrialba, Costa Rica 4 Cafetalera Aquiares S.A., PO Box 362-7150, Turrialba, 7150, Costa Rica 10 5 Research Center for Global Agromedicine, Obihiro University of Agriculture and Veterinary Medecine, Obihiro, Hokkaido 080-8555, Japan Correspondence to: Tiphaine Chevallier ([email protected]) Abstract. Soil organic carbon (SOC) constitutes the largest terrestrial carbon stock. Both distribution and variation of SOC stocks are needed to constitute reference baseline for studies on temporal SOC change. Specifically, in volcanic areas, the 15 spatial variation of soil andic properties usually explains the spatial variation of topsoil SOC contents, but SOC data for deeper soil layers are needed. We measured the andic properties (e.g. pyrophosphate extractable aluminium and allophane contents) and SOC stocks down to 200-cm depth in a 1 km2 micro-watershed covered by Arabica coffee agroforestry in Costa Rica. We used diffuse reflectance mid-infrared (MIR) spectroscopy to allow a large number of soil analysis. -
Microbial Interaction with Clay Minerals and Its Environmental and Biotechnological Implications
minerals Review Microbial Interaction with Clay Minerals and Its Environmental and Biotechnological Implications Marina Fomina * and Iryna Skorochod Zabolotny Institute of Microbiology and Virology of National Academy of Sciences of Ukraine, Zabolotny str., 154, 03143 Kyiv, Ukraine; [email protected] * Correspondence: [email protected] Received: 13 August 2020; Accepted: 24 September 2020; Published: 29 September 2020 Abstract: Clay minerals are very common in nature and highly reactive minerals which are typical products of the weathering of the most abundant silicate minerals on the planet. Over recent decades there has been growing appreciation that the prime involvement of clay minerals in the geochemical cycling of elements and pedosphere genesis should take into account the biogeochemical activity of microorganisms. Microbial intimate interaction with clay minerals, that has taken place on Earth’s surface in a geological time-scale, represents a complex co-evolving system which is challenging to comprehend because of fragmented information and requires coordinated efforts from both clay scientists and microbiologists. This review covers some important aspects of the interactions of clay minerals with microorganisms at the different levels of complexity, starting from organic molecules, individual and aggregated microbial cells, fungal and bacterial symbioses with photosynthetic organisms, pedosphere, up to environmental and biotechnological implications. The review attempts to systematize our current general understanding of the processes of biogeochemical transformation of clay minerals by microorganisms. This paper also highlights some microbiological and biotechnological perspectives of the practical application of clay minerals–microbes interactions not only in microbial bioremediation and biodegradation of pollutants but also in areas related to agronomy and human and animal health. -
Comparison of Phyllosilicates Observed on the Surface of Mars with Those Found in Martian Meteorites
80th Annual Meeting of the Meteoritical Society 2017 (LPI Contrib. No. 1987) 6115.pdf COMPARISON OF PHYLLOSILICATES OBSERVED ON THE SURFACE OF MARS WITH THOSE FOUND IN MARTIAN METEORITES. J. L. Bishop1, and M. A. Velbel2,3, 1SETI Institute & NASA-Ames (Mountain View, CA, USA; [email protected]), 2Michigan State University (East Lansing, MI); 3Smithsonian Institution (Washington, DC). Introduction: Phyllosilicates are an important indicator of aqueous processes on Mars and have been observed on the martian surface as well as inside martian meteorites. Here we survey the types of phyllosilicates detected at the surface of Mars and inside martian rocks in order to gain a better understanding of aqueous alteration processes taking place at Mars. Comparing the phyllosilicates observed on the surface today with those found in meteorites [1] may provide clues toward understanding which phyllosilicates formed in surface environments and which formed through subsurface processes. Martian Surface: Fe/Mg-phyllosilicates are present in numerous sites where the Noachian rocks are exposed [2]. These have been detected and characterized with the OMEGA [3] and CRISM [4] imaging spectrometers. Fe- rich smectite is the most abundant phyllosilicate on the surface of Mars [5], but a large variety of phyllosilicates and short-range-ordered (SRO) materials [6] have been observed. These include: nontronite, saponite, clinochlore, chamosite, serpentine, prehnite, talc, illite, beidelite, montmorillonite, kaolinite, halloysite, opal, hydrated silica, allophane, and imogolite. These are often observed together with iron oxides/hydroxides (FeOx), sulfates or car- bonates. Phyllosilicates and SROs have also been detected on Mars by CheMin on MSL [7]. Analyses of these data from several locations indicate the presence of trioctahedral and dioctahedral smectites and SRO phases [8, 9]. -
Relationships Between Land Use, Fertility and Andisol Behaviour: Examples from Volcanic Islands
144 Land use, fertility,and Andisol behaviour Soil Use and Management (1999) 15, 144^149 Relationships between land use, fertility and Andisol behaviour: examples from volcanic islands S. Perret1 & M. Dorel Abstract. Soils developed on volcanic parent materials have many intrinsic qualities favourable to cropping. However, fertility decreases dramatically when they are badly managed. A short review and case studies from Re¨ union and Guadeloupe highlight the special characteristics of these soils, and their response to management. The interplay of cropping systems and physical characteristics of Andisols is first considered through the example of Pelargonium and food crop systems in Re¨ union. Progressive decrease in production and cropping potential shows in falling yields as well as in the overall decline of the system.The example of banana production in Guadeloupe highlights the increase in inputs needed to realise the land's potential and to maintain yields, in particular more tillage and pest treatment. In both cases, these trends are connected to the co-evolution of soil characteristics and cropping systems.They lead to an increase of risks with less security and less scope in the choice of cropping systems.Technical solutions in the form of erosion-control measures, rotation and planting techniques have been developed and prove to be relevant and consistent in their benefit. Keywords : Andisols, cropping systems, soil fertility,Pelargonium, bananas, Re¨ union, Guadeloupe INTRODUCTION ments of Re¨ union, Guadeloupe and Martinique. ndisols are found mostly in volcanic zones at high Soils with andic behaviour and properties can develop Aaltitudes and are widespread throughout the world in from massive basaltic lavas under heavy rainfall conditions, these environments. -
Soil Quality Indicators in an Andisol Under Different Tree Covers in Disturbed Nothofagus Forests
RESEARCH Soil quality indicators in an Andisol under different tree covers in disturbed Nothofagus forests Marianela Alfaro1, 2, Francis Dube2*, and Erick Zagal3 1Universidad de Costa Rica, Facultad de Ingeniería, Casilla 11501-2060, San José, Costa Rica. 2Universidad de Concepción, Facultad de Ciencias Forestales, Victoria 631, Concepción, Chile. *Corresponding author ([email protected]). 3Universidad de Concepción, Facultad de Agronomía, Av. Vicente Méndez 595, Chillán, Chile. Received: 3 October 2017; Accepted: 16 November 2017; doi:10.4067/S0718-58392018000100106 ABSTRACT Non-systemic logging, cattle browsing and grazing with the site natural vegetation can modify tree covers in native forests and alter the quantity and quality of organic matter entering the soil and hence its overall quality. The objective of this study was to evaluate the effect of modifying tree covers by uncontrolled logging and grazing processes on soil quality, in a mature and unmanaged roble (Nothofagus obliqua (Mirb.) Blume) forest. Soil quality was evaluated under partly-closed (PC), partly-open (PO), and open (OP) forest covers, and two soil depths. The indicators used were soil organic C (SOC), potential net N mineralization (N-min), and nitrification (N-NO3), soil microbial respiration (SMR), microbial biomass C (MBC), soil aggregates, and light fraction (LF). At 0-5 cm soil depth SMR and MBC in PC cover was approximately 12% higher than in PO and OP covers. For the same soil depth N-min in PC cover was 68% and 95% higher than in PO and OP covers, respectively; and for N-NO3 PC cover was 45% higher than PO cover. OP tree cover presented a negative N-NO3 (immobilization). -
Suspension Polymerization of Methyl Methacrylate Stabilized Solely by Palygorskite Nano Fibers*
Chinese Journal of Polymer Science Vol. 32, No. 2, (2014), 123−129 Chinese Journal of Polymer Science © Chinese Chemical Society Institute of Chemistry, CAS Springer-Verlag Berlin Heidelberg 2014 Rapid Communication Suspension Polymerization of Methyl Methacrylate Stabilized Solely by Palygorskite Nano Fibers* Bai-yu Li**, Yin-ping Wang, Xiao-bin Niu and Zai-man Liu The School of Chemical & Biological Engineering, Lanzhou Jiaotong University, Lanzhou 730070, China Abstract A kind of fibrous clay, palygorskite (PAL), was used as the sole stabilizer in suspension polymerization without the using of any other stabilizer usually used, especially polymeric stabilizers. In order to improve the compatibility with the organic monomer, PAL nano fibers were organically modified with silane coupling agent methacryloxypropyltrimethoxysilane (MPS). Transmission electron microscopy (TEM) and Fourier-transform infrared (FTIR) spectroscopy results show that the hydrolyzed MPS was attached onto PAL surface through Si―O―Si bonds formation without morphology change of PAL. At a loading amount of PAL to monomer as low as 0.36 wt%, effective stabilization could be achieved. After suspension polymerization, spherical poly(methyl methacrylate) (PMMA) particles were obtained. Scanning electron microscopy (SEM) analysis on both the outer surface and the inner cracked surface of the spherical PMMA particles indicates that the PAL particles reside on the surface of the PMMA spheres. The densely stacked PAL together with attached silane coupling agent stabilized