Restoration Biology: a Population Biology Perspective
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Priority Actions to Improve Provenance Decision-Making
Forum Priority Actions to Improve Provenance Decision-Making MARTIN F. BREED, PETER A. HARRISON, ARMIN BISCHOFF, PAULA DURRUTY, NICK J. C. GELLIE, EMILY K. GONZALES, KAYRI HAVENS, MARION KARMANN, FRANCIS F. KILKENNY, SIEGFRIED L. KRAUSS, ANDREW J. LOWE, PEDRO MARQUES, PAUL G. NEVILL, PATI L. VITT, AND ANNA BUCHAROVA Selecting the geographic origin—the provenance—of seed is a key decision in restoration. The last decade has seen a vigorous debate on whether to use local or nonlocal seed. The use of local seed has been the preferred approach because it is expected to maintain local adaptation and avoid deleterious population effects (e.g., maladaptation and outbreeding depression). However, the impacts of habitat fragmentation and climate change on plant populations have driven the debate on whether the local-is-best standard needs changing. This debate has largely been theoretical in nature, which hampers provenance decision-making. Here, we detail cross-sector priority actions to improve provenance decision-making, including embedding provenance trials into restoration projects; developing dynamic, evidence-based provenance policies; and establishing stronger research–practitioner collaborations to facilitate the adoption of research outcomes. We discuss how to tackle these priority actions in order to help satisfy the restoration sector’s requirement for appropriately provenanced seed. Keywords: assisted migration, ecological restoration, local adaptation, restoration genetics he restoration sector’s demand for seed is Williams et al. 2014, Havens et al. 2015, Prober et al. 2015, Tenormous and is rapidly increasing with the growth Breed et al. 2016b, Christmas et al. 2016b). in the global restoration effort (Verdone and Seidl 2017). -
Effective Population Size and Genetic Conservation Criteria for Bull Trout
North American Journal of Fisheries Management 21:756±764, 2001 q Copyright by the American Fisheries Society 2001 Effective Population Size and Genetic Conservation Criteria for Bull Trout B. E. RIEMAN* U.S. Department of Agriculture Forest Service, Rocky Mountain Research Station, 316 East Myrtle, Boise, Idaho 83702, USA F. W. A LLENDORF Division of Biological Sciences, University of Montana, Missoula, Montana 59812, USA Abstract.ÐEffective population size (Ne) is an important concept in the management of threatened species like bull trout Salvelinus con¯uentus. General guidelines suggest that effective population sizes of 50 or 500 are essential to minimize inbreeding effects or maintain adaptive genetic variation, respectively. Although Ne strongly depends on census population size, it also depends on demographic and life history characteristics that complicate any estimates. This is an especially dif®cult problem for species like bull trout, which have overlapping generations; biologists may monitor annual population number but lack more detailed information on demographic population structure or life history. We used a generalized, age-structured simulation model to relate Ne to adult numbers under a range of life histories and other conditions characteristic of bull trout populations. Effective population size varied strongly with the effects of the demographic and environmental variation included in our simulations. Our most realistic estimates of Ne were between about 0.5 and 1.0 times the mean number of adults spawning annually. We conclude that cautious long-term management goals for bull trout populations should include an average of at least 1,000 adults spawning each year. Where local populations are too small, managers should seek to conserve a collection of interconnected populations that is at least large enough in total to meet this minimum. -
Routledge Handbook of Ecological and Environmental Restoration the Principles of Restoration Ecology at Population Scales
This article was downloaded by: 10.3.98.104 On: 26 Sep 2021 Access details: subscription number Publisher: Routledge Informa Ltd Registered in England and Wales Registered Number: 1072954 Registered office: 5 Howick Place, London SW1P 1WG, UK Routledge Handbook of Ecological and Environmental Restoration Stuart K. Allison, Stephen D. Murphy The Principles of Restoration Ecology at Population Scales Publication details https://www.routledgehandbooks.com/doi/10.4324/9781315685977.ch3 Stephen D. Murphy, Michael J. McTavish, Heather A. Cray Published online on: 23 May 2017 How to cite :- Stephen D. Murphy, Michael J. McTavish, Heather A. Cray. 23 May 2017, The Principles of Restoration Ecology at Population Scales from: Routledge Handbook of Ecological and Environmental Restoration Routledge Accessed on: 26 Sep 2021 https://www.routledgehandbooks.com/doi/10.4324/9781315685977.ch3 PLEASE SCROLL DOWN FOR DOCUMENT Full terms and conditions of use: https://www.routledgehandbooks.com/legal-notices/terms This Document PDF may be used for research, teaching and private study purposes. Any substantial or systematic reproductions, re-distribution, re-selling, loan or sub-licensing, systematic supply or distribution in any form to anyone is expressly forbidden. The publisher does not give any warranty express or implied or make any representation that the contents will be complete or accurate or up to date. The publisher shall not be liable for an loss, actions, claims, proceedings, demand or costs or damages whatsoever or howsoever caused arising directly or indirectly in connection with or arising out of the use of this material. 3 THE PRINCIPLES OF RESTORATION ECOLOGY AT POPULATION SCALES Stephen D. -
Genetic and Demographic Dynamics of Small Populations of Silene Latifolia
Heredity (2003) 90, 181–186 & 2003 Nature Publishing Group All rights reserved 0018-067X/03 $25.00 www.nature.com/hdy Genetic and demographic dynamics of small populations of Silene latifolia CM Richards, SN Emery and DE McCauley Department of Biological Sciences, Vanderbilt University, PO Box 1812, Station B, Nashville, TN 37235, USA Small local populations of Silene alba, a short-lived herbac- populations doubled in size between samples, while others eous plant, were sampled in 1994 and again in 1999. shrank by more than 75%. Similarly, expected heterozygosity Sampling included estimates of population size and genetic and allele number increased by more than two-fold in diversity, as measured at six polymorphic allozyme loci. individual populations and decreased by more than three- When averaged across populations, there was very little fold in others. When population-specific change in number change between samples (about three generations) in and change in measures of genetic diversity were considered population size, measures of within-population genetic together, significant positive correlations were found be- diversity such as number of alleles or expected hetero- tween the demographic and genetic variables. It is specu- zygosity, or in the apportionment of genetic diversity within lated that some populations were released from the and among populations as measured by Fst. However, demographic consequences of inbreeding depression by individual populations changed considerably, both in terms gene flow. of numbers of individuals and genetic composition. Some Heredity (2003) 90, 181–186. doi:10.1038/sj.hdy.6800214 Keywords: genetic diversity; demography; inbreeding depression; gene flow Introduction 1986; Lynch et al, 1995), the interaction of genetics and demography could also influence population persistence How genetics and demography interact to influence in common species, because it is generally accepted that population viability has been a long-standing question in even many abundant species are not uniformly distrib- conservation biology. -
Evolutionary Restoration Ecology
ch06 2/9/06 12:45 PM Page 113 189686 / Island Press / Falk Chapter 6 Evolutionary Restoration Ecology Craig A. Stockwell, Michael T. Kinnison, and Andrew P. Hendry Restoration Ecology and Evolutionary Process Restoration activities have increased dramatically in recent years, creating evolutionary chal- lenges and opportunities. Though restoration has favored a strong focus on the role of habi- tat, concerns surrounding the evolutionary ecology of populations are increasing. In this con- text, previous researchers have considered the importance of preserving extant diversity and maintaining future evolutionary potential (Montalvo et al. 1997; Lesica and Allendorf 1999), but they have usually ignored the prospect of ongoing evolution in real time. However, such contemporary evolution (changes occurring over one to a few hundred generations) appears to be relatively common in nature (Stockwell and Weeks 1999; Bone and Farres 2001; Kin- nison and Hendry 2001; Reznick and Ghalambor 2001; Ashley et al. 2003; Stockwell et al. 2003). Moreover, it is often associated with situations that may prevail in restoration projects, namely the presence of introduced populations and other anthropogenic disturbances (Stockwell and Weeks 1999; Bone and Farres 2001; Reznick and Ghalambor 2001) (Table 6.1). Any restoration program may thus entail consideration of evolution in the past, present, and future. Restoration efforts often involve dramatic and rapid shifts in habitat that may even lead to different ecological states (such as altered fire regimes) (Suding et al. 2003). Genetic variants that evolved within historically different evolutionary contexts (the past) may thus be pitted against novel and mismatched current conditions (the present). The degree of this mismatch should then determine the pattern and strength of selection acting on trait variation in such populations (Box 6.1; Figure 6.1). -
Population Biology & Life Tables
EXERCISE 3 Population Biology: Life Tables & Theoretical Populations The purpose of this lab is to introduce the basic principles of population biology and to allow you to manipulate and explore a few of the most common equations using some simple Mathcad© wooksheets. A good introduction of this subject can be found in a general biology text book such as Campbell (1996), while a more complete discussion of pop- ulation biology can be found in an ecology text (e.g., Begon et al. 1990) or in one of the references listed at the end of this exercise. Exercise Objectives: After you have completed this lab, you should be able to: 1. Give deÞnitions of the terms in bold type. 2. Estimate population size from capture-recapture data. 3. Compare the following sets of terms: semelparous vs. iteroparous life cycles, cohort vs. static life tables, Type I vs. II vs. III survivorship curves, density dependent vs. density independent population growth, discrete vs. continuous breeding seasons, divergent vs. dampening oscillation cycles, and time lag vs. generation time in population models. 4. Calculate lx, dx, qx, R0, Tc, and ex; and estimate r from life table data. 5. Choose the appropriate theoretical model for predicting growth of a given population. 6. Calculate population size at a particular time (Nt+1) when given its size one time unit previous (Nt) and the corre- sponding variables (e.g., r, K, T, and/or L) of the appropriate model. 7. Understand how r, K, T, and L affect population growth. Population Size A population is a localized group of individuals of the same species. -
Equilibrium Theory of Island Biogeography: a Review
Equilibrium Theory of Island Biogeography: A Review Angela D. Yu Simon A. Lei Abstract—The topography, climatic pattern, location, and origin of relationship, dispersal mechanisms and their response to islands generate unique patterns of species distribution. The equi- isolation, and species turnover. Additionally, conservation librium theory of island biogeography creates a general framework of oceanic and continental (habitat) islands is examined in in which the study of taxon distribution and broad island trends relation to minimum viable populations and areas, may be conducted. Critical components of the equilibrium theory metapopulation dynamics, and continental reserve design. include the species-area relationship, island-mainland relation- Finally, adverse anthropogenic impacts on island ecosys- ship, dispersal mechanisms, and species turnover. Because of the tems are investigated, including overexploitation of re- theoretical similarities between islands and fragmented mainland sources, habitat destruction, and introduction of exotic spe- landscapes, reserve conservation efforts have attempted to apply cies and diseases (biological invasions). Throughout this the theory of island biogeography to improve continental reserve article, theories of many researchers are re-introduced and designs, and to provide insight into metapopulation dynamics and utilized in an analytical manner. The objective of this article the SLOSS debate. However, due to extensive negative anthropo- is to review previously published data, and to reveal if any genic activities, overexploitation of resources, habitat destruction, classical and emergent theories may be brought into the as well as introduction of exotic species and associated foreign study of island biogeography and its relevance to mainland diseases (biological invasions), island conservation has recently ecosystem patterns. become a pressing issue itself. -
4 Genetics of Small Populations: the Case of the Laysan Finch
Case Studies in Ecology and Evolution DRAFT 4 Genetics of Small Populations: the case of the Laysan Finch In 1903, rabbits were introduced to a tiny island in the Hawaiian archipelago called Laysan Island. That island is only 187 ha in size, in the middle of the Pacific Ocean about 1000 km northeast of Hawaii. Despite the benign intentions for having rabbits on the island, the released rabbits quickly multiplied and devoured most of the vegetation. Oceanic islands are often home to unique or endemic species that have evolved in isolation. Laysan was no exception. Well-known examples of island endemics include the finches on the Galapagos Islands and the dodo that was only known from the islands of Mauritius. On Laysan there were several species of birds and plants that were known only from that single island. The introduced rabbits on the island destroyed the food supply for various species of land birds. Several endemic species of plants and animals were driven extinct, including the Laysan rail, the Laysan honeycreeper, the millerbird, and plants like the Laysan fan palm. Only 4 of 26 species of plants remained on the island in 1923, 20 years after the rabbits first arrived. Populations of other species declined to very small levels. One of the two surviving endemic land birds was a small finch called the Laysan finch, Telespiza cantans. After the rabbits were finally exterminated in 1923, the population of finches recovered on Laysan Island. Over the last four decades the average population size of on Laysan Island has been about 11,000 birds. -
COULD R SELECTION ACCOUNT for the AFRICAN PERSONALITY and LIFE CYCLE?
Person. individ.Diff. Vol. 15, No. 6, pp. 665-675, 1993 0191-8869/93 S6.OOf0.00 Printedin Great Britain.All rightsreserved Copyright0 1993Pergamon Press Ltd COULD r SELECTION ACCOUNT FOR THE AFRICAN PERSONALITY AND LIFE CYCLE? EDWARD M. MILLER Department of Economics and Finance, University of New Orleans, New Orleans, LA 70148, U.S.A. (Received I7 November 1992; received for publication 27 April 1993) Summary-Rushton has shown that Negroids exhibit many characteristics that biologists argue result from r selection. However, the area of their origin, the African Savanna, while a highly variable environment, would not select for r characteristics. Savanna humans have not adopted the dispersal and colonization strategy to which r characteristics are suited. While r characteristics may be selected for when adult mortality is highly variable, biologists argue that where juvenile mortality is variable, K character- istics are selected for. Human variable birth rates are mathematically similar to variable juvenile birth rates. Food shortage caused by African drought induce competition, just as food shortages caused by high population. Both should select for K characteristics, which by definition contribute to success at competition. Occasional long term droughts are likely to select for long lives, late menopause, high paternal investment, high anxiety, and intelligence. These appear to be the opposite to Rushton’s r characteristics, and opposite to the traits he attributes to Negroids. Rushton (1985, 1987, 1988) has argued that Negroids (i.e. Negroes) were r selected. This idea has produced considerable scientific (Flynn, 1989; Leslie, 1990; Lynn, 1989; Roberts & Gabor, 1990; Silverman, 1990) and popular controversy (Gross, 1990; Pearson, 1991, Chapter 5), which Rushton (1989a, 1990, 1991) has responded to. -
Amphibian Cascades Frog SOC X X Mountain Meadows, Bogs, Ponds Or
Taxa Species Species SMU/ESU/D Federal State BM CP CR EC KM NR WC WV NS Special needs Limiting factors Data gaps Conservation actions Key reference or plan, if available Common Scientific PS/Group Listing listing Name Name Status status Amphibian Cascades SOC X X Mountain meadows, bogs, ponds or potholes Montane species vulnerable to genetic Habitat requirements and how they may vary by Maintain connectivity of habitat. Monitor effects of fish http://www.fs.fed.us/psw/publications/documents/ frog above 2,400 feet elevation. Requires access isolation. Experiencing substantial elevation within the species' range. Habitat stocking and water quality on populations. Carefully manage psw_gtr244/psw_gtr244.pdf to permanent water. Lays eggs in shallow reductions in southern parts of range characteristics that could enhance migration livestock grazing in occupied wet meadows. Use prescribed sunny edges of ponds, or on low vegetation (e.g., CA). Potentially sensitive to and gene flow. Feeding habits. Effects of burning or hand-felling of trees periodically to set plant near ponds where warm sunlight speeds egg waterborne pathogens. pathogens airborne environmental pollution. succession. If reintroductions are warranted, use individuals development. Larvae may “school” in large Feasibility studies on reintroduction at historic from nearby populations and consult results of feasibility masses. sites. studies. Conservation actions in Oregon are particularly valuable given reductions in other parts of range. Amphibian Cascade X X Cold, fast-flowing, clear, permanent headwater Larvae take several years to reach sexual Basic inventory, abundance and population Maintain stream buffers to maintain cool water Howell, B.L. and N. M. Maggiulli. 2011. -
What Is a Population? an Empirical Evaluation of Some Genetic Methods for Identifying the Number of Gene Pools and Their Degree of Connectivity
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Publications, Agencies and Staff of the U.S. Department of Commerce U.S. Department of Commerce 2006 What is a population? An empirical evaluation of some genetic methods for identifying the number of gene pools and their degree of connectivity Robin Waples NOAA, [email protected] Oscar Gaggiotti Université Joseph Fourier, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/usdeptcommercepub Waples, Robin and Gaggiotti, Oscar, "What is a population? An empirical evaluation of some genetic methods for identifying the number of gene pools and their degree of connectivity" (2006). Publications, Agencies and Staff of the U.S. Department of Commerce. 463. https://digitalcommons.unl.edu/usdeptcommercepub/463 This Article is brought to you for free and open access by the U.S. Department of Commerce at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Publications, Agencies and Staff of the U.S. Department of Commerce by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Molecular Ecology (2006) 15, 1419–1439 doi: 10.1111/j.1365-294X.2006.02890.x INVITEDBlackwell Publishing Ltd REVIEW What is a population? An empirical evaluation of some genetic methods for identifying the number of gene pools and their degree of connectivity ROBIN S. WAPLES* and OSCAR GAGGIOTTI† *Northwest Fisheries Science Center, 2725 Montlake Blvd East, Seattle, WA 98112 USA, †Laboratoire d’Ecologie Alpine (LECA), Génomique des Populations et Biodiversité, Université Joseph Fourier, Grenoble, France Abstract We review commonly used population definitions under both the ecological paradigm (which emphasizes demographic cohesion) and the evolutionary paradigm (which emphasizes reproductive cohesion) and find that none are truly operational. -
Simple Stochastic Populations in Habi- Tats with Bounded, and Varying Carry- Ing Capacities
Simple Stochastic Populations in Habi- tats with Bounded, and Varying Carry- ing Capacities Master’s thesis in Complex Adaptive Systems EDWARD KORVEH Department of Mathematical Sciences CHALMERS UNIVERSITY OF TECHNOLOGY Gothenburg, Sweden 2016 Master’s thesis 2016:NN Simple Stochastic Populations in Habitats with Bounded, and Varying Carrying Capacities EDWARD KORVEH Department of Mathematical Sciences Division of Mathematical Statistics Chalmers University of Technology Gothenburg, Sweden 2016 Simple Stochastic Populations in Habitats with Bounded, and Varying Carrying Capacities EDWARD KORVEH © EDWARD KORVEH, 2016. Supervisor: Peter Jagers, Department of Mathematical Sciences Examiner: Peter Jagers, Department of Mathematical Sciences Master’s Thesis 2016:NN Department of Mathematical Sciences Division of Mathematical Statistics Chalmers University of Technology SE-412 96 Gothenburg Gothenburg, Sweden 2016 iv Simple Stochastic Populations in Habitats with Bounded, and Varying Carrying Capacities EDWARD KORVEH Department of Mathematical Sciences Chalmers University of Technology Abstract A population consisting of one single type of individuals where reproduction is sea- sonal, and by means of asexual binary-splitting with a probability, which depends on the carrying capacity of the habitat, K and the present population is considered. Current models for such binary-splitting populations do not explicitly capture the concepts of early and late extinctions. A new parameter v, called the ‘scaling pa- rameter’ is introduced to scale down the splitting probabilities in the first season, and also in subsequent generations in order to properly observe and record early and late extinctions. The modified model is used to estimate the probabilities of early and late extinctions, and the expected time to extinction in two main cases.