Published OnlineFirst June 8, 2016; DOI: 10.1158/0008-5472.CAN-16-0530 Cancer Molecular and Cellular Pathobiology Research
PHGDH Expression Is Required for Mitochondrial Redox Homeostasis, Breast Cancer Stem Cell Maintenance, and Lung Metastasis Debangshu Samanta1,2, Youngrok Park1, Shaida A. Andrabi1,3, Laura M. Shelton4, Daniele M. Gilkes1,2,5, and Gregg L. Semenza1,2,5,6
Abstract
Intratumoral hypoxia stimulates enrichment of breast cancer drial redox homeostasis, and increased apoptosis, which abrogat- stem cells (BCSC), which are critical for metastasis and patient ed BCSC enrichment under hypoxic conditions. PHGDH-deficient mortality. Here we report a metabolic adaptation that is required cells exhibited increased oxidant levels and apoptosis, as well as for hypoxia-induced BCSC enrichment and metastasis. Hypoxia- loss of BCSC enrichment, in response to treatment with carbopla- inducible factors coordinately regulate expression of genes encod- tin or doxorubicin. PHGDH-deficient cells were relatively weakly ing phosphoglycerate dehydrogenase (PHGDH) and five down- tumorigenic and tumors that did form were deficient in BCSCs, stream enzymes in theserinesynthesis pathway andmitochondrial abolishing metastatic capacity. Our findings highlight a role for one-carbon (folate) cycle. RNAi-mediated silencing of PHGDH PHGDH in the formation of secondary (recurrent or metastatic) expression in both estrogen receptor–positive and negative breast tumors, with potential implications for therapeutic targeting of cancer cells led to decreased NADPH levels, disturbed mitochon- advanced cancers. Cancer Res; 76(15); 1–13. 2016 AACR.
Introduction increased mitochondrial reactive oxygen species (ROS) produc- tion that occurs due to decreased electron transport chain effi- Breast cancer mortality occurs in patients whose cancer cells ciency under hypoxic conditions (16–23). metastasize to distant sites, such as the lungs, bones, and brain. Oncogenic transformation also activates pathways that generate Only a small percentage of the breast cancer cells in a primary ROS and place cancer cells at risk for apoptosis (24). Redox tumor have self-renewal capacity, which is necessary to form a homeostasis is dependent on a balance between levels of oxidants metastatic tumor, and are designated as breast cancer stem cells and antioxidants. The latter are dependent upon the generation of (BCSC) or tumor-initiating cells (1, 2). Compared with bulk NADPH, which is used to maintain glutathione, the principal breast cancer cells, BCSCs exhibit increased survival when treated cellular antioxidant, in a reduced form. Two glycolytic shunt path- with cytotoxic chemotherapy (3, 4), which actively induces the ways utilize glucose metabolites for NADPH generation: the pen- BCSC phenotype (5–7). Intratumoral hypoxia is common in tose phosphate pathway (PPP) diverts glucose-6-phosphate, advanced breast cancers (8) and induces the metastatic (9) and whereas the serine synthesis pathway (SSP) converts 3-phospho- BCSC (10) phenotypes through transcriptional activation of glycerate into serine via three reactions that are catalyzed by target genes by hypoxia-inducible factor 1 (HIF-1) and HIF-2 phosphoglycerate dehydrogenase (PHGDH), phosphoserine ami- (11–15). Adaptation of mammalian cells to chronic hypoxia notransferase 1 (PSAT1), and phosphoserine phosphatase (PSPH). involves a HIF-1–dependent switch from oxidative to glycolytic Serine is utilized as a substrate for one-carbon (folate cycle) metabolism, which is an adaptive response to, and ameliorates, metabolism (1CM), either in the cytosol or mitochondria. In the mitochondria (mito1CM), serine hydroxymethyl transferase 2 (SHMT2) catalyzes the reaction of serine and tetrahydrofolate 1 Institute for Cell Engineering, Johns Hopkins University School of (THF) to glycine and 5,10-methylene-THF (MTHF). MTHF dehy- Medicine, Baltimore, Maryland. 2McKusick-Nathans Institute of Genet- ic Medicine, Johns Hopkins University School of Medicine, Baltimore, drogenase 2 (MTHFD2) catalyzes the reaction of MTHF and þ Maryland. 3Department of Neurology, Johns Hopkins University NADP to generate formyl-MTHF and NADPH. Finally, MTHFD1L 4 School of Medicine, Baltimore, Maryland. Human Metabolome Tech- splits formyl-THF into THF and formate (Fig. 1A). The cytosolic nologies America, Inc., Boston, Massachusetts. 5Sidney Kimmel Com- prehensive Cancer Center, Johns Hopkins University School of Med- (cyto1CM) reactions are catalyzed by SHMT1 and MTHFD1 (which icine, Baltimore, Maryland. 6Departments of Pediatrics, Medicine, performs reactions catalyzed by both MTHFD2 and MTHFD1L). Radiation Oncology, and Biological Chemistry, Johns Hopkins Univer- PHGDH catalyzes the reaction that diverts 3-phosphoglycerate sity School of Medicine, Baltimore, Maryland. from the Embden–Meyerhof pathway (EMP) to the SSP. A short Note: Supplementary data for this article are available at Cancer Research hairpin RNA (shRNA) screen revealed that transformed breast Online (http://cancerres.aacrjournals.org/). cells required PHGDH expression for tumor xenograft formation Corresponding Author: Gregg L. Semenza, Johns Hopkins University School of (25). PHGDH gene amplification was found in 6% of breast Medicine, 733 N. Broadway, Suite 671, Baltimore, MD 21205. Fax: 443-287-5618; cancers and shRNA-mediated knockdown of PHGDH expression E-mail: [email protected] inhibited proliferation of breast cancer cells with PHGDH ampli- doi: 10.1158/0008-5472.CAN-16-0530 fication (25, 26). PHGDH overexpression was observed in 70% of 2016 American Association for Cancer Research. estrogen receptor negative (ER ) breast cancers (25), indicating
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A C Glucose 3-Phosphoglycerate Lactate NAD+ PHGDH NADH PHGDH MTHFD1L MTHFD2 PSPH 3-Phosphohydroxypyruvate SHMT2 MTHFD1 PSAT1 SHMT1 Glutamate PSAT1 α-Ketoglutarate MDA-231 Phosphoserine SUM-149 PSPH HCC-1954
Serine Glycine MCF-7 SHMT2 ZR-75.1 THF MTHF BT-474 GSH NADP+ MTHFD2 GSSG NADPH Hypoxic induction Formyl-THF No hypoxic induction Cytosol Mitochondrion MTHFD1L Figure 1. Hypoxia induces expression of mRNAs Formate encoding SSP and mito1CM enzymes. +THF A, enzymatic reactions. Glucose- derived 3-phosphoglycerate is metabolized to glycine and NADPþ is reduced to NADPH through the B P 20% O2 1% O2 No induction 1% O2 Induction ( < 0.001) activity of SSP (blue) and mito1CM (purple) enzymes. B, mRNA expression. Breast cancer cell lines 30 PHGDH 3.5 PSAT1 2 were exposed to 20% or 1% O for 300 2 3 24 hours and expression of mRNAs 250 1.5 2.5 encoding SSP and 1CM enzymes were 20 200 2 analyzed by RT-qPCR. The expression 1 150 1.5 of each mRNA was quantified relative 10 to 18S rRNA and then normalized to 100 1 0.5 the result obtained from MDA-MB-231 50 0.5 (MDA-231) cells at 20% O (mean 0 0 2 0 0 SEM; n ¼ 3). C, summary of mRNA expression data (columns) in breast cancer cell lines (rows). Red, significantly increased expression 0.8 at 1% as compared to 20% O 12 2 3.5 7 (P < 0.001; Student t test); gray, no PSPH SHMT2 10 0.6 induction at 1% O2. 2.5 5 8 0.4 6 1.5 3 4 0.2 0.5 1 2 0 0 Relative mRNA expression mRNA Relative
60 2 1 12 MTHFD2 MTHFD1L 50 10 1.5 0.8 8 40 0.6 6 30 1 0.4 4 20 0.5 0.2 2 10 0 0 0 0
that a mechanism other than gene amplification must underlie 1CM enzymes, is required to maintain redox homeostasis in PHGDH overexpression in most breast cancers. We hypothesized hypoxic breast cancer cells, especially in BCSCs, which are par- that increased expression of PHGDH, as well as other SSP and ticularly sensitive to ROS (27).
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Materials and Methods Metabolite analysis Metabolites in culture media and cells were analyzed by cap- For details, see Supplementary Materials and Methods. illary electrophoresis and single or tandem mass spectrometry (MS/MS) relative to internal standards (Human Metabolome Cell culture Technologies) as described previously (29, 30). MCF-7, MDA-MB-231, HCC-1954, SUM-149, and SUM-159 cells were cultured as described previously (6). BT-474, ZR75.1, and T47D cells were cultured in RPMI1640 with 10% FBS. The cell Bioinformatics lines were obtained from Dr. Sara Sukumar (Johns Hopkins For the HIF signature, the The Cancer Genome Atlas Breast University, Baltimore, MD) in 2012. Cell authentication was Invasive Carcinoma Gene Expression Dataset of 1,215 patients performed by PCR analysis of short tandem repeats. was analyzed (31, 32). Tumor grade was analyzed using GOBO (33). Kaplan–Meier curves were generated using KM plotter (34). Lentivirus transduction Vectors encoding shRNA targeting HIF-1a and HIF-2a, and Results generation of MDA-MB-231 and MCF-7 subclones, were SSP and mito1CM enzyme expression is induced in hypoxic described previously (13, 28). pLKO.1-puro lentiviral vectors breast cancer cells þ encoding shRNA targeting PHGDH (Supplementary Table S1) Breast cancers are classified as ER , progesterone receptor þ were purchased from Sigma-Aldrich. Lentiviruses were packaged positive (PR ), human epidermal growth factor receptor 2 pos- þ and transduced cells were selected as described previously (28). itive (HER2 ), or triple negative (ER /PR /HER2 ). We exposed six representative human breast cancer cell lines to 20% or 1% O2 þ þ þ þ Reverse transcription and quantitative real-time PCR for 24 hours: BT-474 (ER /PR /HER2 ), HCC-1954 (HER2 ), þ þ Total RNA was extracted from cells and tumors using TRIzol MCF-7 (ER /PR ), MDA-MB-231 (ER /PR /HER2 ), SUM-149 þ (Invitrogen) and treated with DNase I (Ambion). cDNA synthesis (ER /PR /HER2 ), and ZR-75.1 (ER ; ref. 35). Total RNA was was performed using the iScript cDNA Synthesis system (Bio-Rad). isolated and analyzed for expression of SSP (PHGDH, PSAT1, qPCR was performed using human-specific primers (Supplemen- PSPH), mito1CM (SHMT2, MTHFD2, MTHFD1L), and cyto1CM tary Table S2) and iQ SYBR Green Supermix (Bio-Rad; ref. 28). (SHMT1, MTHFD1) mRNAs. In MDA-MB-231, HCC-1954, MCF- 7 and BT-474 cells, hypoxic exposure induced the expression of all Immunoblot assays three SSP and all three mito1CM mRNAs, and all six breast cancer Whole-cell lysates were prepared in modified RIPA buffer (14). cell lines exhibited induction of PHGDH and SHMT2 mRNA Blots were probed with antibodies against HIF-1a, PHGDH, (Fig. 1B and C), which encode enzymes catalyzing the first PSAT1, and PSPH (Novus Biologicals). HRP-conjugated anti- reaction of the SSP and mito1CM, respectively (Fig. 1A). In rabbit and anti-mouse secondary antibodies (Santa Cruz Biotech- contrast, expression of cyto1CM mRNAs was induced by hypoxia nology) were used. Blots were reprobed with anti-actin antibody in only one or two cell lines (Fig. 1C). (Santa Cruz Biotechnology). The SSP and PPP represent alternate mechanisms by which glucose metabolites are utilized to generate NADPH. The first BCSC assays enzyme of the PPP is glucose-6-phosphate dehydrogenase Aldefluor and mammosphere assays were performed as (G6PD). In contrast to the SSP and 1CM mRNAs, expression of described previously (13). G6PD mRNA was repressed by hypoxia in all breast cancer lines analyzed (Supplementary Fig. S1). Taken together, these data MitoSOX staining indicate that hypoxia selectively induces the expression of mRNAs Cells were incubated in 5 mmol/L MitoSOX Red (Molecular encoding SSP and mito1CM enzymes in cell lines derived from þ þ þ Probes) in PBS/5% FBS at 37 C for 45 minutes and rinsed with ER ,PR , HER2 , and triple-negative breast cancers. PBS. Stained cells were filtered and subjected to flow cytometry. HIFs are required for hypoxic induction of SSP and mito1CM Apoptosis and viability assays enzymes Apoptotic cells were quantified by FITC-Annexin V and APC-7- MDA-MB-231 subclones that were stably transfected with a AAD staining followed by flow cytometry. Viable cells were vector encoding a nontargeting control shRNA (NTC) or shRNA quantified by MTT assay (Invitrogen). targeting HIF-1a (sh1a), HIF-2a (sh2a), or both HIF-1a and HIF- 2a [double knockdown (DKD)] have been used to investigate the Glutathione and NADPH assays role of HIFs in breast cancer progression (6, 13, 28). Hypoxic Cell lysates were analyzed for glutathione and NADPH using induction of PHGDH, PSAT1, PSPH, SHMT2, MTHFD2, and GSH/GSSG-Glo and NADP/NADPH-Glo assays (Promega). MTHFD1L mRNA expression, which was observed in the NTC subclone, was impaired when HIF-1a or HIF-2a or both were Glucose uptake assay silenced (Fig. 2A). Immunoblot assays demonstrated hypoxic Cells were incubated in 150 mmol/L 2-[N-(7-nitrobenz-2-oxa- induction of PHGDH, PSAT1, and PSPH protein expression in the 1,3-diazol-4-yl) amino]-2-deoxy-D-glucose (Molecular Probes) NTC subclone, which was impaired in the knockdown subclones and subjected to flow cytometry. (Fig. 2B). Similar results were obtained in MCF-7 subclones (Sup- plementary Fig. S2A). Hypoxia-induced PHGDH, PSAT1, and Seahorse assays PSPH expression in parental MCF-7 cells was abrogated, in a Oxygen consumption and extracellular acidification were mea- dose-dependent manner, by treatment with acriflavine (Supple- sured using the XF24-Analyzer (Seahorse Bioscience). mentary Fig. S2B), which is a drug that inhibits the
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20% O2 1% O2 A PHGDH 5 * 5 * SHMT2 4 4 3 # 3 # # # 2 # 2 # 1 1 * * 0 0 a a NTC sh1a sh2a DKD NTC sh1 sh2 DKD
8 PSAT1 4 * MTHFD2 * 3 6 Figure 2. SSP and mito1CM expression is HIF- 4 2 # dependent and increased in BCSCs. A, # # # analysis of mRNA expression in MDA- 2 # 1 * # * * MB-231 subclones, which expressed a 0 0 non-targeting control shRNA (NTC) or NTC sh1a sh2a DKD NTC sh1a sh2a DKD shRNA targeting HIF-1a (sh1a), HIF- Relative mRNA expression mRNA Relative Relative mRNA expression mRNA Relative 2a (sh2a), or both HIF-1a and HIF-2a * (DKD), and were exposed to 20% or 1% 4 2.5 * PSPH MTHFD1L O2 for 24 hours. Data were normalized 2 to NTC at 20% O (mean SEM; n ¼ 3 # 2 # P < 1.5 # 3). , 0.01 versus NTC at 20% O2; # P < 2 # , 0.001 versus NTC at 1% O2. 1 * * B, immunoblot assays of lysates # # 1 0.5 * prepared from MDA-MB-231 subclones, which were exposed to 0 0 fl a a NTC sh1a sh2a DKD 20% or 1% O2 for 48 hours. C, Alde uor NTC sh1 sh2 DKD assay of MDA-MB-231 subclones
exposed to 20% or 1% O2 for 72 hours. The percentage of cells expressing B NTC sh1a1sh1a10 sh2a1 DKD C aldehyde dehydrogenase (ALDHþ) was determined (mean SEM; n ¼ 3). O2 (%) 20 1 20 1 20 1 20 1 20 1 20% O2 1% O2 , P < 0.05 versus NTC at 20% O2; 5 #, P < 0.01 versus NTC at 1% HIF-1α * 4 O2. D, analysis of gene expression PHGDH in adherent monolayers and Cells 3 mammospheres. MDA-MB-231 cells + PSAT1 2 were cultured on standard or ultra-low adherence plates for 7 days in # 1 # 20% O2 and adherent cells and PSPH % ALDH * * # mammospheres, respectively, were 0 Actin a a harvested for RT-qPCR analyses. NTC sh1 sh2 DKD Results were normalized to adherent cells (mean SEM; n ¼ 3). , P < 0.001 versus adherent cells D (Student t test). Adherent Mammospheres 5 12 *
4 * * 10 8 3 * * 6 2 * * 4 1 * 2 * * *
Relative mRNA expression mRNA Relative 0 0 a a
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heterodimerization of HIF-a and HIF-1b subunits (36). Thus, esis, we exposed MDA-MB-231 and MCF-7 subclones to20% or 1% genetic and pharmacologic approaches indicate that HIFs coordi- O2 for 72 hours in adherent culture and stained the cells with nately regulate the expression of SSP and mito1CM enzymes when MitoSOX Red, which is selectively targeted to mitochondria and breast cancer cells are exposed to hypoxia. generates fluorescence when oxidized by superoxide radicals, there- BCSCs are characterized by high aldehyde dehydrogenase by serving as an indicator of mitochondrial ROS in live cells. The (ALDH) activity and can be identified by the Aldefluor assay, in NTC subclones showed no increase in ROS after hypoxic exposure, þ which BODIPY-aminoacetaldehyde is converted to the fluores- whereas the percentage of MitoSOX cells was significantly cent product BODIPY-aminoacetate (37). Exposure of NTC sub- increased in PHGDH knockdown subclones (Fig. 4A). Analysis of clones of MDA-MB-231 (Fig. 2C) and MCF-7 (Supplementary Fig. Annexin V and 7-amino-actinomycin D (7-AAD) staining revealed þ S2C) to hypoxia for 72 hours increased the percentage of ALDH no increase in apoptosis of hypoxic NTC cells, whereas the per- þ BCSCs, whereas this response was impaired in knockdown sub- centage of Annexin V /7-AAD cells was increased in the PHGDH clones. Treatment of MCF-7 cells with acriflavine also blocked knockdown subclones (Fig. 4B). Exposure of cells to hypoxia in the hypoxic induction of the BCSC phenotype as determined by the presence of manganese (III) tetrakis (1-methyl-4-pyridyl) porphy- mammosphere assay (Supplementary Fig. S2D), which is based rin (MnTMPyP), a cell-permeable superoxide scavenger (39), res- on the selective ability of BCSCs to generate multicellular spher- cued the apoptosis of PHGDH knockdown subclones under hyp- oids under nonadherent culture conditions (38). oxia (Fig. 4C), indicating that increased apoptosis was due to increased ROS levels. Expression of SSP and mito1CM mRNAs is increased in BCSCs We hypothesized that PHGDH was required under hypoxic The preceding results demonstrated a correlation between loss conditions for NADPH generation to maintain glutathione in a of hypoxia-induced SSP and mito1CM expression and loss of reduced state. Exposure of NTC subclones to hypoxia increased the hypoxia-induced BCSC enrichment. To determine whether ratio of reduced to oxidized glutathione (Fig. 4D), which was mRNAs encoding these enzymes were overexpressed in BCSCs associated with a modest decrease in NADPH levels (Fig. 4E). In relative to non-BCSCs, we cultured MDA-MB-231 and MCF-7 cells contrast, PHGDH knockdown was associated with an impaired as either adherent monolayers or mammospheres for 7 days. hypoxic induction of reduced glutathione (Fig. 4D) and a signif- HIF1a, HIF-2a, PHGDH, PSAT1, SHMT2, MTHFD2, and icant decrease in NADPH levels (Fig. 4E). Thus, PHGDH deficiency MTHFD1L mRNA expression was increased in BCSC-enriched impairs NADPH production, which becomes a liability specifically mammosphere cultures of MDA-MB-231 cells, whereas expres- under hypoxic conditions. sion of the cyto1CM enzymes SHMT1 and MTHFD2 was decreased in mammospheres relative to adherent cells, as was PHGDH plays a major role in determining the utilization of the PPP enzyme G6PD (Fig. 2D). Increased expression of HIF-1a, glucose metabolites HIF-2a, PHGDH, SHMT2, MTHFD2, and MTHFD1L mRNA in Glucose metabolism via the EMP leads to the production of BCSCs relative to non-BCSCs was also observed in MCF-7 cells acetyl CoA, which is utilized for ATP generation through oxidative (Supplementary Fig. S2E). Thus, HIF, SSP, and mito1CM mRNAs phosphorylation, and lactic acid, which is the terminal product of are preferentially expressed in BCSCs, suggesting that they play an glycolysis. PHGDH diverts glucose metabolites to the SSP, thereby important role in the BCSC phenotype. reducing production of both acetyl CoA and lactic acid. We analyzed the O2 consumption rate (OCR) and extracellular acid- PHGDH knockdown abrogates hypoxia-induced BCSC ification rate (ECAR) to monitor oxidative phosphorylation and enrichment glycolysis, respectively, in NTC and PHGDH knockdown sub- We chose to analyze the effect of PHGDH loss-of-function in clones. PHGDH deficiency increased the OCR (Fig. 5A) and ECAR breast cancer cells for three reasons: (i) PHGDH is required for the (Fig. 5B) in both MDA-MB-231 and MCF-7 cells. Glucose uptake diversion of glucose metabolites to the SSP and 1CM; (ii) PHGDH was not increased in PHGDH knockdown subclones (Fig. 5C). expression was hypoxia-inducible in all breast cancer lines ana- Taken together, these results indicate that the increased OCR and lyzed; and (iii) PHGDH was preferentially expressed in BCSCs. ECAR in PHGDH knockdown subclones are due to decreased MDA-MB-231 and MCF-7 cells were stably transfected with an shunting of glucose metabolites from the EMP to the SSP. expression vector encoding either of two independent shRNAs The effect of PHGDH knockdown on metabolite levels in MDA- targeting PHGDH (designated sh2 and sh4). Knockdown efficiency MB-231 cells was analyzed by MS. PHGDH knockdown was was validated at the mRNA (Fig. 3A) and protein (Fig. 3B) levels in associated with increased extracellular (Fig. 5D) and intracellular both cell lines. PHGDH knockdown did not impair proliferation of (Fig. 5F) lactic acid levels under both nonhypoxic and hypoxic either MDA-MB-231 (Supplementary Fig. S3A) or MCF-7 (Supple- conditions, which was consistent with the increased ECAR mentary Fig. S3B) cells cultured for 72 hours at either 20% or (Fig. 5B). Hypoxia increased extracellular serine levels in the NTC 1% O2. In contrast, PHGDH knockdown markedly impaired the subclone, whereas PHGDH deficiency reduced serine levels under hypoxia-induced enrichment of BCSCs as determined by Aldefluor both nonhypoxic and hypoxic conditions (Fig. 5E). Thus, serine assays (Fig. 3C) or primary and secondary mammosphere assays synthesis increases in NTC cells under hypoxic conditions as a result (Fig. 3D). These results indicate that PHGDH expression is specif- of increased PHGDH expression, leading to decreased import and/ ically required for hypoxic induction of the BCSC phenotype. or increased export of serine. Hypoxia or PHGDH knockdown increased intracellular levels of all of the metabolites in the EMP at PHGDH is required to maintain redox homeostasis and or downstream of the SSP branch point: 3-phosphoglyceric acid survival of hypoxic breast cancer cells (Fig. 5G), 2-phosphoglyceric acid (Fig. 5H), phosphoenolpyruvic Acute hypoxia leads to increased mitochondrial ROS generation acid (Fig. 5I), and pyruvic acid (Fig. 5J). Hypoxia decreased intra- (23). We hypothesized that PHGDH deficiency would lead to cellular levels of 6-phosphogluconic acid (Fig. 5K), the G6PD increased ROS levels and increased apoptosis. To test this hypoth- reaction product, which is consistent with decreased G6PD
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A 1.2 1.2 1 1 0.8 0.8 0.6 0.6 Figure 3. 0.4 0.4 Decreased PHGDH expression and 0.2 hypoxia-induced BCSC enrichment in
0.2 PHGDH Relative Relative PHGDH Relative mRNA expression mRNA mRNA expression mRNA * * * * knockdown subclones. A and B, 0 0 analysis of PHGDH expression. NTC sh2 sh4 NTC sh2 sh4 Subclones of MDA-MB-231 (left) and MCF-7 (right) expressing NTC shRNA or either of two different shRNAs B NTC sh2 sh4 NTC sh2 sh4 targeting PHGDH (sh2 and sh4) were exposed to 20% or 1% O for 24 (A)or O (%) 20 1 20 1 20 1 2 O2 (%) 20 1 20 1 20 1 2 48 (B) hours and analyzed for PHGDH PHGDH expression of PHGDH mRNA by RT- qPCR assay (A) and PHGDH protein by Actin Actin immunoblot assay (B). RNA data were normalized to NTC (mean SEM; n ¼ 3). , P < 0.001 versus NTC. C, Aldefluor assay. Subclones were 7 9 C * * exposed to 20% or 1% O2 for 72 hours þ 6 8 and the percentage of ALDH cells 7 was determined by flow cytometry 5 n ¼ P < Cells 6 (mean SEM; 3). , 0.01; Cells + 4 P < + 5 , 0.001 versus NTC at 20% O2; # P < 3 4 , 0.001 versus NTC at 1% O2. 3 D, mammosphere assays. Subclones 2 # 2 # were exposed to 20% or 1% O2 for % ALDH
% ALDH # 1 # 72 hours, transferred to ultra-low ** 1 ** ** 0 0 attachment plates, and 7 days later the NTC sh2 sh4 NTC sh2 sh4 number of primary mammospheres per field was counted (mean SEM; 20% O2 n ¼ 3). Primary mammospheres were 1% O2 collected, dissociated, transferred to ultra-low attachment plates, and secondary mammospheres were D Primary Secondary Primary Secondary counted 7 days later (mean SEM; n ¼ P < P < 80 30 ** 60 25 3). , 0.01; , 0.001 versus ** # P < ** NTC at 20% O2; , 0.001 versus ** 25 50 20 60 NTC at 1% O2. 20 40 15 40 15 30 # # # 10 10 20 # # 20 # # # 5
Mammospheres 5 10 * * * 0 0 0 0 NTC sh2 sh4 NTC sh2 sh4 NTC sh2 sh4 NTC sh2 sh4
expression in hypoxic cells (Supplementary Fig. S1). In contrast, (5–7). Carboplatin is a chemotherapy agent that is used to treat PHGDH knockdown did not affect 6-phosphogluconic acid levels, breast cancer (41, 42). Platinum compounds increase mitochon- as expected, because the PPP shunt is upstream of the SSP shunt in drial ROS by forming adducts on mitochondrial DNA, thereby the EMP (Fig. 5L). Taken together, the data presented in Fig. 5 impairing the transcription of electron transport chain compo- indicate that PHGDH shunts a significant proportion of glucose- nents (43). MDA-MB-231 and MCF-7 subclones were exposed to derived 3-phosphoglycerate from the EMP to the SSP in breast increasing concentrations of carboplatin for 72 hours and cell cancer cells. viability was determined by MTT assay. PHGDH deficiency sen- sitized breast cancer cells to carboplatin (Supplementary Fig. S4). PHGDH knockdown increases the sensitivity of breast cancer Compared with NTC subclones, treatment of PHGDH-deficient cells to chemotherapy cells with carboplatin at IC50 led to increased mitochondrial ROS As many cytotoxic cancer chemotherapies increase ROS levels (Fig. 6A) and apoptosis (Fig. 6B). Carboplatin treatment of NTC þ (40), we hypothesized that PHGDH deficiency would also impair subclones induced enrichment of ALDH BCSCs, which was the enrichment of BCSCs that occurs in response to chemotherapy abrogated in the knockdown subclones (Fig. 6C).
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Downloaded from cancerres.aacrjournals.org on September 29, 2021. © 2016 American Association for Cancer Research. www.aacrjournals.org T t1 O 1% at NTC T t1 O 1% at NTC rasneo 50 of absence or h ucoe eeepsdt 0 or O 20% 1% to exposed were subclones The a eemnd(mean determined was P O 20% at NTC to normalized and measured ( ratio essNCa 0 O 20% at NTC versus a eemndby determined was Red MitoSOX cells for of positive percentage the and hours 72 for O 1% or 20% to exposed were subclones (right) MCF-7 and (left) MDA-MB-231 production. ROS mitochondrial of survival. cell redox and homeostasis on knockdown PHGDH of Effect 4. Figure ## # xoe o2%o %O 1% or 20% to exposed were subclones The scavenger. ROS .0 essNCa %O 1% at NTC versus 0.001 eemnd(mean determined nei V Annexin 2husadtepretg fAnnexin V of percentage the and hours 72 r1 O 1% or D (mean , þ 2 and , < , P /7-AAD P (mean P .0 essNCa 0 O 20% at NTC versus 0.001 < 2 < < o 2husadtepretg of percentage the and hours 72 for E, D .0 essNCa %O 1% at NTC versus 0.001 2 .0 essNCa 0 O 20% at NTC versus 0.001 .0 essn MnTMPyP. no versus 0.001 n AP ees( levels NADPH and ) ucoe eeepsdt 20% to exposed were subclones o 2husadteGSH/GSSG the and hours 72 for SEM; þ Downloaded from n 7-AAD and 2 2 ppoi el was cells apoptotic SEM; . . n B, ¼ nlsso apoptosis. of analysis m 3). n o/ nMy for MnTMPyP mol/L fl 2 ¼ ; wcytometry ow # SEM; # , 3). , 2 P P ntepresence the in ppoi cells apoptotic SEM; 2 < < . fl .0 versus 0.001 .0 versus 0.001 , C, n uorescence P Published OnlineFirstJune8,2016;DOI:10.1158/0008-5472.CAN-16-0530 A, E ¼ eceby rescue n < were ) analysis 2 3). ¼ 2 0.01 ; ; # 3). cancerres.aacrjournals.org 2 P ; < 2 , MnTMPyP E D C B A
NADPH GSH/GSSG 100 200 300 400 500 0.5 1.5 % Apoptotic cells % Apoptotic cells % MitoSox+ cells 0 1 0 10 15 0 2 4 6 8 0 1 2 3 4 5 6 7 8 9 0 5 - T h sh4 sh2 NTC T sh2 NTC T h sh4 sh2 NTC T h sh4 sh2 NTC T h sh4 sh2 NTC MDA-MB-231 Cancer Research. * * - on September 29, 2021. © 2016American Association for - ** * * 50 # # # # # - * * # ## 50 # # # HD sRqie o ratCne Progression Cancer Breast for Required Is PHGDH 20% O MnTMPyP 1% O NADPH GSH/GSSG
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% Apoptotic cells % Apoptotic cells 2 20 40 60 80 % MitoSox cells 2 0 0 1 0 1 2 3 4 5 6 7 8 9 0 2 4 6 8 0 2 4 6 8 acrRs 61)Ags ,2016 1, August 76(15) Res; Cancer - T h sh4 sh2 NTC T h sh4 sh2 NTC T sh4 NTC T h sh4 sh2 NTC T h sh4 sh2 NTC * - MCF-7 ** - * ** # # 50 # # # - ** * # # ## # 50 # OF7 OF8 acrRs 61)Ags ,2016 1, August 76(15) Res; Cancer aat tal. et Samanta D ABC K HI FG OCR Concentration Concentration (pmol/min/mg) Concentration Concentration (pmol/106 cells) 6 (pmol/10 cells) 0.05 0.15 120,000 150,000 180,000 0.1 0.2
6 10,000 20,000 6 30,000 60,000 90,000 (pmol/10 cells) 6-Phosphogluconic acid (pmol/10 cells) 0 Downloaded from 100 200 300 400 2-Phosphoglyceric acid 20 40 60 0 0 0 0 * 0 1% 20% 0 1% 20% 20% 0 1% 20% Lactic acid * * * * Lactic acid (2PG) (Lac) * * * ** Published OnlineFirstJune8,2016;DOI:10.1158/0008-5472.CAN-16-0530 (6PG) * # 1% # # * cancerres.aacrjournals.org # # #
* ECAR (mpH/min/mg) 0 1 2 3 4 5 6 7 Glc L E Phosphoenolpyruvic acid 100 150 200 250 * 50 3-Phosphoglyceric acid 200 400 0 100 200 300 400 500 600 * 0 0 0 1% 20% G6P 3PG 3PG G6P 6PG 6PG PPP * ** 0 1% 20% 20% (PEP) * * (3PG) * Serine * * Cancer Research. 5 Glucose uptake * 1,000 1,200 1,400 on September 29, 2021. © 2016American Association for # SSP Ser Ser 200 400 600 800 1% ## # 0 # 3 # 2PG 2PG 1,000 2,000 3,000 4,000 5,000 J 0 Pyruvic acid Extracellular 0 1% 20% PEP Intracellular * MDA-231 MDA-231 (Pyr) * Media sh4 sh2 NTC sh4 sh2 NTC MDA231 sh2 MDA231 NTC MCF7 sh4 MCF7 sh2 MCF7 NTC AcCoA # Lac Lac Pyr # o2%o %O 1% or 20% to exposed were subclones MDA-MB-231 ( ( extracellular of concentrations absolute eemndby determined mean the ucoe utrdudr2%O 20% under cultured Subclones C, acidi extracellular and (OCR) rate consumption oxygen knockdown. PHGDH of consequences Metabolic 5. Figure -l amino]-2-deoxy- 4-yl) 2-[N-(7-nitrobenz-2-oxa-1,3-diazol- 150 with stained were O 0 O 20% P n Ser. and 3PG between reactions three the and 3PG, and (G6P) glucose-6-phosphate omits the that form abbreviated in shown are (SSP) pathway synthesis serine only (PPP; pathway phosphate pentose pathway, Embden pathways. SEM; (mean standards reference using MS ( ( OCR nuae t2%O 20% at incubated subclones MDA-MB-231 and MCF-7 in F B , 2 , – P SEM; mean ; . nlsso lcs uptake. glucose of analysis P K L, fi < eaoie eedtrie by determined were metabolites ) < eezmtcratosbetween reactions enzymatic ve n A .0 essMF7NTC; MCF-7 versus 0.001 lcs Gc metabolic (Glc) glucose 2 .0 essMAM-3 NTC. MDA-MB-231 versus 0.001 ¼ mean ; n ; # ¼ 3). , fl fi P SEM; 3). oecneitniywas intensity uorescence s ecini hw) and shown), is reaction rst A < D , D P and .0 essNCa 1% at NTC versus 0.001 2 fl and – < SEM; n wctmty(mean cytometry ow o 2husadthe and hours 72 for K, fi ¼ .0 essNCat NTC versus 0.001 acrResearch Cancer ainrt (ECAR). rate cation B, – eaooi data. metabolomic E 2 eehf(main) Meyerhof )wr measured were 3) n intracellular and ) o 2hours. 72 for esrmn of measurement n D m ¼ guoeand -glucose mol/L )adECAR and 3) 2 Published OnlineFirst June 8, 2016; DOI: 10.1158/0008-5472.CAN-16-0530
PHGDH Is Required for Breast Cancer Progression
Vehicle MDA-MB-231 MCF-7 Carboplatin # # A 12 In vitro 10 10 8 Cells 8 Cells + * + 6 * 6 4 4 MitoSox 2 MitoSox 2 % % 0 0 NTC sh2 NTC sh4
B 10 # 10 #
8 8 * 6 6
4 4
2 2 % Apoptotic cells Apoptotic % 0 cells Apoptotic % 0 Figure 6. NTC sh2 NTC sh4 Effect of PHGDH knockdown on the response to chemotherapy. A–C, response to chemotherapy in vitro. MDA-MB-231 (left) and MCF-7 (right) subclones * were exposed to vehicle or carboplatin for 72 hours at 3 15 * m m C IC50 (75 mol/L for MDA-MB-231 and 200 mol/L for 2.5 MCF-7) and the percentage of MitoSOXþ (A), apoptotic (B), þ Cells and ALDH (C) cells was determined (mean SEM; 2 Cells 10 +