Proteomic Profile of Human Spermatozoa in Healthy And
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View of HER2: Human Epidermal Growth Factor Receptor 2; TNBC: Triple-Negative Breast Resistance to Systemic Therapy in Patients with Breast Cancer
Wen et al. Cancer Cell Int (2018) 18:128 https://doi.org/10.1186/s12935-018-0625-9 Cancer Cell International PRIMARY RESEARCH Open Access Sulbactam‑enhanced cytotoxicity of doxorubicin in breast cancer cells Shao‑hsuan Wen1†, Shey‑chiang Su2†, Bo‑huang Liou3, Cheng‑hao Lin1 and Kuan‑rong Lee1* Abstract Background: Multidrug resistance (MDR) is a major obstacle in breast cancer treatment. The predominant mecha‑ nism underlying MDR is an increase in the activity of adenosine triphosphate (ATP)-dependent drug efux trans‑ porters. Sulbactam, a β-lactamase inhibitor, is generally combined with β-lactam antibiotics for treating bacterial infections. However, sulbactam alone can be used to treat Acinetobacter baumannii infections because it inhibits the expression of ATP-binding cassette (ABC) transporter proteins. This is the frst study to report the efects of sulbactam on mammalian cells. Methods: We used the breast cancer cell lines as a model system to determine whether sulbactam afects cancer cells. The cell viabilities in the present of doxorubicin with or without sulbactam were measured by MTT assay. Protein identities and the changes in protein expression levels in the cells after sulbactam and doxorubicin treatment were determined using LC–MS/MS. Real-time reverse transcription polymerase chain reaction (real-time RT-PCR) was used to analyze the change in mRNA expression levels of ABC transporters after treatment of doxorubicin with or without sulbactam. The efux of doxorubicin was measures by the doxorubicin efux assay. Results: MTT assay revealed that sulbactam enhanced the cytotoxicity of doxorubicin in breast cancer cells. The results of proteomics showed that ABC transporter proteins and proteins associated with the process of transcription and initiation of translation were reduced. -
Testicular Dysgenesis Syndrome: from Human Disorders to Mechanistic Studies in an Animal Model
Conference abstracts. International Symposium on Animal Biology of Reproduction, Nov. 15-18, 2006, Belo Horizonte, Brazil. Testicular dysgenesis syndrome: from human disorders to mechanistic studies in an animal model R. Sharpe, K. Mahood, H. Scott, N. Hallmark, G. Hutchison, C. McKinnell, D. Ferrara MRC Human Reproductive Sciences Unit, Queen’s Medical Research Institute, Edinburgh. Disorders of male reproductive development are fetal Leydig cells towards the centre of the testis and extremely common in humans. They may manifest this migration appears to interfere with the final phases either at birth (cryptorchidism, hypospadias) or in young of seminiferous cord formation and appropriate adulthood (low sperm counts, testicular germ cell testicular cell segregation in the fetal testis. This then cancer). There is reasonable evidence that the incidence leads postnatally to the appearance of focal dysgenetic of most of these disorders has been increasing in recent areas that contain malformed seminiferous cords and decades and it has been hypothesised that they form a intratubular Leydig cells. Wherever the intratubular testicular dysgenesis syndrome (TDS), with a common Leydig cells occur, no germ cells survive and this may origin in fetal life. Each of these disorders is a partly explain the common occurrence of Sertoli cell- significant risk factor for each of the others and they all only tubules within the adult testis of rats exposed in share common, pregnancy-related risk factors. It is utero to DBP. DBP exposure in fetal life also results hypothesised that the disorders arise as a result of in a delay in the normal phases of germ cell maldevelopment of the testis which leads to malfunction development; this is first manifest by delayed entry of the developing Sertoli and Leydig cells in the fetal into quiescence coincident with prolongation of testis with the disorders resulting downstream from this expression of the pluripotency factor OCT4. -
Allosteric HSP70 Inhibitors Perturb Mitochondrial Proteostasis and Overcome Proteasome Inhibitor Resistance in Multiple Myeloma
bioRxiv preprint doi: https://doi.org/10.1101/2020.04.21.052456; this version posted April 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Title: Allosteric HSP70 inhibitors perturb mitochondrial proteostasis and overcome proteasome inhibitor resistance in multiple myeloma Authors: Ian D. Ferguson1, Yu-Hsiu T. Lin1,+, Christine Lam1,+, Hao Shao2, Martina Hale1, Kevin M. Tharp3, Margarette C. Mariano1, Veronica Steri4, Donghui Wang4, Paul Phojanokong4, Sami T. Tuomivaara1, Byron Hann4, Christoph Driessen5, Brian Van Ness6, Jason E. Gestwicki2, Arun P. Wiita1,* Affiliations: 1Dept. of Laboratory Medicine, 2Institute for Neurodegenerative Disease, 3Dept. of Surgery, 4Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, CA, USA, 5Department of Oncology and Hematology, Kantonsspital St. Gallen, St. Gallen, Switzerland, 6Department of Genetics, Cell Biology & Development, University of Minnesota, Minneapolis, MN, USA. +equal contribution. *Correspondence: Arun P. Wiita, MD, PhD UCSF Dept. of Laboratory Medicine [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.04.21.052456; this version posted April 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Proteasome inhibitor (PI) resistance remains a central challenge in multiple myeloma. To identify pathways mediating resistance, we first map proteasome-associated genetic co- dependencies. We identify cytosolic heat shock protein 70 (HSP70) chaperones as potential targets, consistent with proposed mechanisms of myeloma tumor cells overcoming PI-induced stress. These results lead us to explore allosteric HSP70 inhibitors (JG compounds) as myeloma therapeutics. -
Supplemental Information
Supplemental information Dissection of the genomic structure of the miR-183/96/182 gene. Previously, we showed that the miR-183/96/182 cluster is an intergenic miRNA cluster, located in a ~60-kb interval between the genes encoding nuclear respiratory factor-1 (Nrf1) and ubiquitin-conjugating enzyme E2H (Ube2h) on mouse chr6qA3.3 (1). To start to uncover the genomic structure of the miR- 183/96/182 gene, we first studied genomic features around miR-183/96/182 in the UCSC genome browser (http://genome.UCSC.edu/), and identified two CpG islands 3.4-6.5 kb 5’ of pre-miR-183, the most 5’ miRNA of the cluster (Fig. 1A; Fig. S1 and Seq. S1). A cDNA clone, AK044220, located at 3.2-4.6 kb 5’ to pre-miR-183, encompasses the second CpG island (Fig. 1A; Fig. S1). We hypothesized that this cDNA clone was derived from 5’ exon(s) of the primary transcript of the miR-183/96/182 gene, as CpG islands are often associated with promoters (2). Supporting this hypothesis, multiple expressed sequences detected by gene-trap clones, including clone D016D06 (3, 4), were co-localized with the cDNA clone AK044220 (Fig. 1A; Fig. S1). Clone D016D06, deposited by the German GeneTrap Consortium (GGTC) (http://tikus.gsf.de) (3, 4), was derived from insertion of a retroviral construct, rFlpROSAβgeo in 129S2 ES cells (Fig. 1A and C). The rFlpROSAβgeo construct carries a promoterless reporter gene, the β−geo cassette - an in-frame fusion of the β-galactosidase and neomycin resistance (Neor) gene (5), with a splicing acceptor (SA) immediately upstream, and a polyA signal downstream of the β−geo cassette (Fig. -
Sperm Motility, Oxidative Status, and Mitochondrial Activity: Exploring Correlation in Different Species
antioxidants Article Sperm Motility, Oxidative Status, and Mitochondrial Activity: Exploring Correlation in Different Species Alessandra Gallo 1,* , Maria Consiglia Esposito 1 , Elisabetta Tosti 1 and Raffaele Boni 1,2,* 1 Department of Biology and Evolution of Marine Organisms, Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Naples, Italy; [email protected] (M.C.E.); [email protected] (E.T.) 2 Department of Sciences, University of Basilicata, 85100 Potenza, Italy * Correspondence: [email protected] (A.G.); [email protected] (R.B.); Tel.: +39-081-5833233 (A.G.); +39-0971-205017 (R.B.) Abstract: Sperm quality assessment is the first step for evaluating male fertility and includes the estimation of sperm concentration, motility, and morphology. Nevertheless, other parameters can be assessed providing additional information on the male reproductive potential. This study aimed to evaluate and correlate the oxidative status, mitochondrial functionality, and motility in sperma- tozoa of two marine invertebrate (Ciona robusta and Mytilus galloprovincialis) and one mammalian (Bos taurus) species. By combining fluorescent staining and spectrofluorometer, sperm oxidative status was evaluated through intracellular reactive oxygen species (ROS) and plasma membrane lipid peroxidation (LPO) analysis. Mitochondrial functionality was assessed through the mitochondrial membrane potential (MMP). In the three examined species, a negative correlation emerged between sperm motility vs ROS levels and LPO. Sperm motility positively correlated with MMP in bovine, whereas these parameters were not related in ascidian or even negatively related in mussel sper- matozoa. MMP was negatively related to ROS and LPO levels in ascidians, only to LPO in bovine, Citation: Gallo, A.; Esposito, M.C.; and positively related in mussel spermatozoa. -
Cilia and Flagella of Eukaryotes
Cilia and Flagella of Eukaryotes I . R . GIBBONS The simple description that cilia are "contractile protoplasm in Early Developments its simplest form" (Dellinger, 1909) has fallen away as a mean- Among the most notable steps in the history of early studies ingless phrase ... A cilium is manifestly a highly complex and Downloaded from http://rupress.org/jcb/article-pdf/91/3/107s/1075481/107s.pdf by guest on 26 September 2021 compound organ, and . morphological description is clearly on cilia and flagella were the initial light microscope observa- only a beginning . tions of beating cilia on ciliated protozoa by Anton van Leeu- Irene Manton, 1952 wenhoek in 1675 ; the hypothesis proposed by W . Sharpey in 1835 that cilia and flagella are active organelles moved by contractile material distributed along their length rather than As recognized by Irene Manton (1) at the time that the basic passive structures moved by cytoplasmic flow or other contrac- 9 + 2 structural uniformity of cilia and most eukaryotic flagella tile activity within the cell body; and the observation in 1888- was first becoming recognized, these organelles are sufficiently 1890 by E . Ballowitz (2) that sperm flagella contain a substruc- complex that knowledge of their structure, no matter how ture of about 9-11 fine fibrils which are continuous along the detailed, cannot provide an understanding of their mechanisms length of the flagellum (Fig . 1) . More detailed accounts with of growth and function . In our understanding of these mecha- full references to this early work and to other studies before nisms, the substantial advances of the intervening 28 years 1948 can be found in the monographs of Sir James Gray (3) have, for the most part, resulted from experiments in which it and Michael Sleigh (4) . -
Sperm Motility Index and Intrauterine Insemination Pregnancy Outcomes
Original Research Sperm Motility Index and Intrauterine Insemination Pregnancy Outcomes Chanel L. Bonds, MD; William E. Roudebush, PhD; and Bruce A. Lessey, MD, PhD From the Department of OB/GYN, Greenville Health System, Greenville, SC, (C.L.B., B.A.L.); De- partment of Biomedical Sciences, University of South Carolina School of Medicine Greenville, Greenville, SC (W.E.R.); and Department of Surgery, Division of Urology, Greenville Health System, Greenville, SC (W.E.R.) Abstract Background: This study determined if sperm motility index affects pregnancy outcome following intrauterine insemination between various ovulation induction protocols. Methods: Calculated sperm motility (determined via computer-assisted semen analyzer) indices were correlated with pregnancy outcomes following intrauterine insemination. Results: Pregnancy rates for different ranges of sperm motility index values showed a trend of in- creasing pregnancy success across increasing ranges of grouped sperm motility index values, but none of these differences between groups was statistically significant. Within the clomid/letrozole cycles, male age differed significantlyP ( = .022) between the pregnant and non-pregnant groups. The difference in sperm motility index between pregnant and non-pregnant groups approached significance P( = .066). Conclusions: A trend exists for an increased pregnancy rate as the sperm motility index approaches 200. Furthermore, our research suggests that as the male partner becomes advanced in age, the chance for getting his partner pregnant declines significantly. ntrauterine insemination (IUI) has been a first- Published pregnancy rates following IUI reveal line treatment for many infertile couples since wide variation. A review article of 18 IUI studies Ithe early 1980s.1 In theory, IUI is successful in revealed a pregnancy rate that ranged from 5% to establishing pregnancy because the procedure 62%. -
In This Table Protein Name, Uniprot Code, Gene Name P-Value
Supplementary Table S1: In this table protein name, uniprot code, gene name p-value and Fold change (FC) for each comparison are shown, for 299 of the 301 significantly regulated proteins found in both comparisons (p-value<0.01, fold change (FC) >+/-0.37) ALS versus control and FTLD-U versus control. Two uncharacterized proteins have been excluded from this list Protein name Uniprot Gene name p value FC FTLD-U p value FC ALS FTLD-U ALS Cytochrome b-c1 complex P14927 UQCRB 1.534E-03 -1.591E+00 6.005E-04 -1.639E+00 subunit 7 NADH dehydrogenase O95182 NDUFA7 4.127E-04 -9.471E-01 3.467E-05 -1.643E+00 [ubiquinone] 1 alpha subcomplex subunit 7 NADH dehydrogenase O43678 NDUFA2 3.230E-04 -9.145E-01 2.113E-04 -1.450E+00 [ubiquinone] 1 alpha subcomplex subunit 2 NADH dehydrogenase O43920 NDUFS5 1.769E-04 -8.829E-01 3.235E-05 -1.007E+00 [ubiquinone] iron-sulfur protein 5 ARF GTPase-activating A0A0C4DGN6 GIT1 1.306E-03 -8.810E-01 1.115E-03 -7.228E-01 protein GIT1 Methylglutaconyl-CoA Q13825 AUH 6.097E-04 -7.666E-01 5.619E-06 -1.178E+00 hydratase, mitochondrial ADP/ATP translocase 1 P12235 SLC25A4 6.068E-03 -6.095E-01 3.595E-04 -1.011E+00 MIC J3QTA6 CHCHD6 1.090E-04 -5.913E-01 2.124E-03 -5.948E-01 MIC J3QTA6 CHCHD6 1.090E-04 -5.913E-01 2.124E-03 -5.948E-01 Protein kinase C and casein Q9BY11 PACSIN1 3.837E-03 -5.863E-01 3.680E-06 -1.824E+00 kinase substrate in neurons protein 1 Tubulin polymerization- O94811 TPPP 6.466E-03 -5.755E-01 6.943E-06 -1.169E+00 promoting protein MIC C9JRZ6 CHCHD3 2.912E-02 -6.187E-01 2.195E-03 -9.781E-01 Mitochondrial 2- -
Definition of the Landscape of Promoter DNA Hypomethylation in Liver Cancer
Published OnlineFirst July 11, 2011; DOI: 10.1158/0008-5472.CAN-10-3823 Cancer Therapeutics, Targets, and Chemical Biology Research Definition of the Landscape of Promoter DNA Hypomethylation in Liver Cancer Barbara Stefanska1, Jian Huang4, Bishnu Bhattacharyya1, Matthew Suderman1,2, Michael Hallett3, Ze-Guang Han4, and Moshe Szyf1,2 Abstract We use hepatic cellular carcinoma (HCC), one of the most common human cancers, as a model to delineate the landscape of promoter hypomethylation in cancer. Using a combination of methylated DNA immunopre- cipitation and hybridization with comprehensive promoter arrays, we have identified approximately 3,700 promoters that are hypomethylated in tumor samples. The hypomethylated promoters appeared in clusters across the genome suggesting that a high-level organization underlies the epigenomic changes in cancer. In normal liver, most hypomethylated promoters showed an intermediate level of methylation and expression, however, high-CpG dense promoters showed the most profound increase in gene expression. The demethylated genes are mainly involved in cell growth, cell adhesion and communication, signal transduction, mobility, and invasion; functions that are essential for cancer progression and metastasis. The DNA methylation inhibitor, 5- aza-20-deoxycytidine, activated several of the genes that are demethylated and induced in tumors, supporting a causal role for demethylation in activation of these genes. Previous studies suggested that MBD2 was involved in demethylation of specific human breast and prostate cancer genes. Whereas MBD2 depletion in normal liver cells had little or no effect, we found that its depletion in human HCC and adenocarcinoma cells resulted in suppression of cell growth, anchorage-independent growth and invasiveness as well as an increase in promoter methylation and silencing of several of the genes that are hypomethylated in tumors. -
Inhibition of the Heat Shock Protein a (HSPA) Family Potentiates the Anticancer Effects of Manumycin A
cells Article Inhibition of the Heat Shock Protein A (HSPA) Family Potentiates the Anticancer Effects of Manumycin A Damian Robert Sojka 1, Sylwia Hasterok 1, Natalia Vydra 1, Agnieszka Toma-Jonik 1, Anna Wieczorek 2 , Agnieszka Gogler-Pigłowska 1 and Dorota Scieglinska 1,* 1 Center for Translational Research and Molecular Biology of Cancer, Maria Sklodowska-Curie National Research Institute of Oncology Gliwice Branch, 44-102 Gliwice, Poland; [email protected] (D.R.S.); [email protected] (S.H.); [email protected] (N.V.); [email protected] (A.T.-J.); [email protected] (A.G.-P.) 2 Division of Medical Biology, Institute of Biology, Jan Kochanowski University, 25-406 Kielce, Poland; [email protected] * Correspondence: [email protected] Abstract: Manumycin A (MA) is a well-tolerated natural antibiotic showing pleiotropic anticancer effects in various preclinical in vitro and in vivo models. Anticancer drugs may themselves act as stressors to induce the cellular adaptive mechanism that can minimize their cytotoxicity. Heat shock proteins (HSPs) as cytoprotective factors can counteract the deleterious effects of various stressful stimuli. In this study, we examined whether the anticancer effects of MA can be counteracted by the mechanism related to HSPs belonging to the HSPA (HSP70) family. We found that MA caused cell type-specific alterations in the levels of HSPAs. These changes included concomitant upregulation of the stress-inducible (HSPA1 and HSPA6) and downregulation of the non-stress-inducible (HSPA2) Citation: Sojka, D.R.; Hasterok, S.; paralogs. However, neither HSPA1 nor HSPA2 were necessary to provide protection against MA in Vydra, N.; Toma-Jonik, A.; Wieczorek, lung cancer cells. -
Molecular Signatures Differentiate Immune States in Type 1 Diabetes Families
Page 1 of 65 Diabetes Molecular signatures differentiate immune states in Type 1 diabetes families Yi-Guang Chen1, Susanne M. Cabrera1, Shuang Jia1, Mary L. Kaldunski1, Joanna Kramer1, Sami Cheong2, Rhonda Geoffrey1, Mark F. Roethle1, Jeffrey E. Woodliff3, Carla J. Greenbaum4, Xujing Wang5, and Martin J. Hessner1 1The Max McGee National Research Center for Juvenile Diabetes, Children's Research Institute of Children's Hospital of Wisconsin, and Department of Pediatrics at the Medical College of Wisconsin Milwaukee, WI 53226, USA. 2The Department of Mathematical Sciences, University of Wisconsin-Milwaukee, Milwaukee, WI 53211, USA. 3Flow Cytometry & Cell Separation Facility, Bindley Bioscience Center, Purdue University, West Lafayette, IN 47907, USA. 4Diabetes Research Program, Benaroya Research Institute, Seattle, WA, 98101, USA. 5Systems Biology Center, the National Heart, Lung, and Blood Institute, the National Institutes of Health, Bethesda, MD 20824, USA. Corresponding author: Martin J. Hessner, Ph.D., The Department of Pediatrics, The Medical College of Wisconsin, Milwaukee, WI 53226, USA Tel: 011-1-414-955-4496; Fax: 011-1-414-955-6663; E-mail: [email protected]. Running title: Innate Inflammation in T1D Families Word count: 3999 Number of Tables: 1 Number of Figures: 7 1 For Peer Review Only Diabetes Publish Ahead of Print, published online April 23, 2014 Diabetes Page 2 of 65 ABSTRACT Mechanisms associated with Type 1 diabetes (T1D) development remain incompletely defined. Employing a sensitive array-based bioassay where patient plasma is used to induce transcriptional responses in healthy leukocytes, we previously reported disease-specific, partially IL-1 dependent, signatures associated with pre and recent onset (RO) T1D relative to unrelated healthy controls (uHC). -
Proteomic Analysis of Seminal Fluid from Men Exhibiting Oxidative Stress
Sharma et al. Reproductive Biology and Endocrinology 2013, 11:85 http://www.rbej.com/content/11/1/85 RESEARCH Open Access Proteomic analysis of seminal fluid from men exhibiting oxidative stress Rakesh Sharma1, Ashok Agarwal1*, Gayatri Mohanty1,6, Stefan S Du Plessis2, Banu Gopalan3, Belinda Willard4, Satya P Yadav5 and Edmund Sabanegh1 Abstract Background: Seminal plasma serves as a natural reservoir of antioxidants. It helps to remove excessive formation of reactive oxygen species (ROS) and consequently, reduce oxidative stress. Proteomic profiling of seminal plasma proteins is important to understand the molecular mechanisms underlying oxidative stress and sperm dysfunction in infertile men. Methods: This prospective study consisted of 52 subjects: 32 infertile men and 20 healthy donors. Once semen and oxidative stress parameters were assessed (ROS, antioxidant concentration and DNA damage), the subjects were categorized into ROS positive (ROS+) or ROS negative (ROS-). Seminal plasma from each group was pooled and subjected to proteomics analysis. In-solution digestion and protein identification with liquid chromatography tandem mass spectrometry (LC-MS/MS), followed by bioinformatics analyses was used to identify and characterize potential biomarker proteins. Results: A total of 14 proteins were identified in this analysis with 7 of these common and unique proteins were identified in both the ROS+ and ROS- groups through MASCOT and SEQUEST analyses, respectively. Prolactin- induced protein was found to be more abundantly present in men with increased levels of ROS. Gene ontology annotations showed extracellular distribution of proteins with a major role in antioxidative activity and regulatory processes. Conclusions: We have identified proteins that help protect against oxidative stress and are uniquely present in the seminal plasma of the ROS- men.