bioRxiv preprint doi: https://doi.org/10.1101/2021.01.21.427628; this version posted January 21, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Mobile Type VI secretion system loci of the gut Bacteroidales display extensive intra-ecosystem transfer, multi-species sweeps and geographical clustering Leonor García-Bayona#, Michael J. Coyne#, and Laurie E. Comstock* Division of Infectious Diseases, Brigham and Women’s Hospital, Harvard Medical School, Boston, MA #These authors contributed equally *Address correspondence to: Laurie Comstock Division of Infectious Diseases 181 Longwood Avenue Boston, MA 02115 Tel: 617-525-2204 Fax: 617-525-2210
[email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.01.21.427628; this version posted January 21, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Abstract The human gut microbiota is a dense microbial ecosystem with extensive opportunities for bacterial contact-dependent processes such as conjugation and type VI secretion system (T6SS)-dependent antagonism. In the gut Bacteroidales, two distinct genetic architectures of T6SS loci, GA1 and GA2, are contained on integrative and conjugative elements (ICE). Despite intense interest in the T6SSs of the gut Bacteroidales, there is only a superficial understanding of their evolutionary patterns, and of their dissemination among Bacteroidales species in human gut communities.