Chapter 1 Introduction
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Early Photosynthetic Eukaryotes Inhabited Low-Salinity Habitats
Early photosynthetic eukaryotes inhabited PNAS PLUS low-salinity habitats Patricia Sánchez-Baracaldoa,1, John A. Ravenb,c, Davide Pisanid,e, and Andrew H. Knollf aSchool of Geographical Sciences, University of Bristol, Bristol BS8 1SS, United Kingdom; bDivision of Plant Science, University of Dundee at the James Hutton Institute, Dundee DD2 5DA, United Kingdom; cPlant Functional Biology and Climate Change Cluster, University of Technology Sydney, Ultimo, NSW 2007, Australia; dSchool of Biological Sciences, University of Bristol, Bristol BS8 1TH, United Kingdom; eSchool of Earth Sciences, University of Bristol, Bristol BS8 1TH, United Kingdom; and fDepartment of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138 Edited by Peter R. Crane, Oak Spring Garden Foundation, Upperville, Virginia, and approved July 7, 2017 (received for review December 7, 2016) The early evolutionary history of the chloroplast lineage remains estimates for the origin of plastids ranging over 800 My (7). At the an open question. It is widely accepted that the endosymbiosis that same time, the ecological setting in which this endosymbiotic event established the chloroplast lineage in eukaryotes can be traced occurred has not been fully explored (8), partly because of phy- back to a single event, in which a cyanobacterium was incorpo- logenetic uncertainties and preservational biases of the fossil re- rated into a protistan host. It is still unclear, however, which cord. Phylogenomics and trait evolution analysis have pointed to a Cyanobacteria are most closely related to the chloroplast, when the freshwater origin for Cyanobacteria (9–11), providing an approach plastid lineage first evolved, and in what habitats this endosym- to address the early diversification of terrestrial biota for which the biotic event occurred. -
METABOLIC EVOLUTION in GALDIERIA SULPHURARIA By
METABOLIC EVOLUTION IN GALDIERIA SULPHURARIA By CHAD M. TERNES Bachelor of Science in Botany Oklahoma State University Stillwater, Oklahoma 2009 Submitted to the Faculty of the Graduate College of the Oklahoma State University in partial fulfillment of the requirements for the Degree of DOCTOR OF PHILOSOPHY May, 2015 METABOLIC EVOLUTION IN GALDIERIA SUPHURARIA Dissertation Approved: Dr. Gerald Schoenknecht Dissertation Adviser Dr. David Meinke Dr. Andrew Doust Dr. Patricia Canaan ii Name: CHAD M. TERNES Date of Degree: MAY, 2015 Title of Study: METABOLIC EVOLUTION IN GALDIERIA SULPHURARIA Major Field: PLANT SCIENCE Abstract: The thermoacidophilic, unicellular, red alga Galdieria sulphuraria possesses characteristics, including salt and heavy metal tolerance, unsurpassed by any other alga. Like most plastid bearing eukaryotes, G. sulphuraria can grow photoautotrophically. Additionally, it can also grow solely as a heterotroph, which results in the cessation of photosynthetic pigment biosynthesis. The ability to grow heterotrophically is likely correlated with G. sulphuraria ’s broad capacity for carbon metabolism, which rivals that of fungi. Annotation of the metabolic pathways encoded by the genome of G. sulphuraria revealed several pathways that are uncharacteristic for plants and algae, even red algae. Phylogenetic analyses of the enzymes underlying the metabolic pathways suggest multiple instances of horizontal gene transfer, in addition to endosymbiotic gene transfer and conservation through ancestry. Although some metabolic pathways as a whole appear to be retained through ancestry, genes encoding individual enzymes within a pathway were substituted by genes that were acquired horizontally from other domains of life. Thus, metabolic pathways in G. sulphuraria appear to be composed of a ‘metabolic patchwork’, underscored by a mosaic of genes resulting from multiple evolutionary processes. -
Algae & Marine Plants of Point Reyes
Algae & Marine Plants of Point Reyes Green Algae or Chlorophyta Genus/Species Common Name Acrosiphonia coalita Green rope, Tangled weed Blidingia minima Blidingia minima var. vexata Dwarf sea hair Bryopsis corticulans Cladophora columbiana Green tuft alga Codium fragile subsp. californicum Sea staghorn Codium setchellii Smooth spongy cushion, Green spongy cushion Trentepohlia aurea Ulva californica Ulva fenestrata Sea lettuce Ulva intestinalis Sea hair, Sea lettuce, Gutweed, Grass kelp Ulva linza Ulva taeniata Urospora sp. Brown Algae or Ochrophyta Genus/Species Common Name Alaria marginata Ribbon kelp, Winged kelp Analipus japonicus Fir branch seaweed, Sea fir Coilodesme californica Dactylosiphon bullosus Desmarestia herbacea Desmarestia latifrons Egregia menziesii Feather boa Fucus distichus Bladderwrack, Rockweed Haplogloia andersonii Anderson's gooey brown Laminaria setchellii Southern stiff-stiped kelp Laminaria sinclairii Leathesia marina Sea cauliflower Melanosiphon intestinalis Twisted sea tubes Nereocystis luetkeana Bull kelp, Bullwhip kelp, Bladder wrack, Edible kelp, Ribbon kelp Pelvetiopsis limitata Petalonia fascia False kelp Petrospongium rugosum Phaeostrophion irregulare Sand-scoured false kelp Pterygophora californica Woody-stemmed kelp, Stalked kelp, Walking kelp Ralfsia sp. Silvetia compressa Rockweed Stephanocystis osmundacea Page 1 of 4 Red Algae or Rhodophyta Genus/Species Common Name Ahnfeltia fastigiata Bushy Ahnfelt's seaweed Ahnfeltiopsis linearis Anisocladella pacifica Bangia sp. Bossiella dichotoma Bossiella -
The Moss-Back Alga (Cladophorophyceae, Chlorophyta) on Two Species of Freshwater Turtles in the Kimberleys
Telopea 12(2) 279–284 The moss-back alga (Cladophorophyceae, Chlorophyta) on two species of freshwater turtles in the Kimberleys Stephen Skinner1,2, Nancy FitzSimmons3 and Timothy J. Entwisle1 1National Herbarium of New South Wales, Mrs Macquaries Road, Sydney NSW 2000 Australia 2Southern ACT Catchment Group Inc., PO Box 2056, Kambah, ACT Author for correspondence: [email protected] 3Institute for Applied Ecology, School of Resource, Environmental & Heritage Sciences, University of Canberra, Canberra, ACT 2601, Australia Abstract The range of the Australian freshwater alga Basicladia ramulosa Ducker is extended, both in its turtle hosts (Chelodina burrungandjii Thomson et al.; Emydura australis (Grey)) and in geography, to tropical northern Western Australia. Along with further morphological observations, sporangia are described for the first time in this taxon. Introduction Moss-back turtles (Fig. 1) have fascinated biologists for many years. While the carapace of a potentially amphibious turtle would be a challenging habitat for most aquatic organisms, it is perhaps surprising there are only a handful of attached algae reported from such sites. Edgren et al. (1953) detailed the range of host turtles then known in North America and the range of epizoic algae that included Rhizoclonium and Cladophora. Two further genera in the Cladophoraceae are the only macroalgae widely reported on turtle carapaces: the prostrate, spreading, endozoic (and possibly disease causing) Dermatophyton radicans Peter, and species of the heterotrichous genus Basicladia, responsible for the name ‘moss-back’. In the United States, Basicladia is considered a small epizoic genus on turtles and water snails, of three to four taxa (John 2003). Hamilton (1948) described sexual reproduction in North American species of Basicladia involving the fusion of biflagellate zooids as is commonly the case in the Cladophoraceae. -
Ball Et Al. (2011)
Journal of Experimental Botany, Vol. 62, No. 6, pp. 1775–1801, 2011 doi:10.1093/jxb/erq411 Advance Access publication 10 January, 2011 DARWIN REVIEW The evolution of glycogen and starch metabolism in eukaryotes gives molecular clues to understand the establishment of plastid endosymbiosis Steven Ball*, Christophe Colleoni, Ugo Cenci, Jenifer Nirmal Raj and Catherine Tirtiaux Unite´ de Glycobiologie Structurale et Fonctionnelle, UMR 8576 CNRS-USTL, Baˆ timent C9, Cite´ Scientifique, F-59655 Villeneuve d’Ascq, France * To whom correspondence should be addressed: E-mail: [email protected] Received 10 September 2010; Revised 18 November 2010; Accepted 23 November 2010 Downloaded from Abstract Solid semi-crystalline starch and hydrosoluble glycogen define two distinct physical states of the same type of storage polysaccharide. Appearance of semi-crystalline storage polysaccharides appears linked to the http://jxb.oxfordjournals.org/ requirement of unicellular diazotrophic cyanobacteria to fuel nitrogenase and protect it from oxygen through respiration of vast amounts of stored carbon. Starch metabolism itself resulted from the merging of the bacterial and eukaryote pathways of storage polysaccharide metabolism after endosymbiosis of the plastid. This generated the three Archaeplastida lineages: the green algae and land plants (Chloroplastida), the red algae (Rhodophyceae), and the glaucophytes (Glaucophyta). Reconstruction of starch metabolism in the common ancestor of Archaeplastida suggests that polysaccharide synthesis was ancestrally cytosolic. In addition, the synthesis of cytosolic starch from the ADP-glucose exported from the cyanobacterial symbiont possibly defined the original by guest on March 30, 2012 metabolic flux by which the cyanobiont provided photosynthate to its host. Additional evidence supporting this scenario include the monophyletic origin of the major carbon translocators of the inner membrane of eukaryote plastids which are sisters to nucleotide-sugar transporters of the eukaryote endomembrane system. -
Dr. Mitch Pavao-Zuckerman Department of Ecology and Evolutionary Biology
Dr. Mitch Pavao-Zuckerman Department of Ecology and Evolutionary Biology 621621--82208220 mzuckermzucker@[email protected] OfficeOffice hours:hours: BiosciencesBiosciences WestWest 431431 WW andand FF 11--22 p.m.p.m. oror byby appointmentappointment Diversity of Plants Diversity of Plants (Fig 29.4) Chlorophyta Ancestral Alga Nontracheophytes Nonseed Tracheophytes Gymnosperms The Transition to Life on Land Angiosperms The Vascular Plants The Seed Plants The Flowering Plants Monophyly • Monophyletic group – includes the most recent common ancestor and all decendents • These are NOT monophyletic: GreenGreen PlantsPlants ((viridiphytesviridiphytes)) areare aa monophyleticmonophyletic groupgroup • Green Plants include the Chlorophytes (green algae) • Other green algae • and the land plants EmbryophytesEmbryophytes (Land(Land Plants)Plants) Land Plants are also a monophyletic group • Photosynthetic eukaryotes that use chlorophyll a and b and store carbohydrates starch • Resting embryo with placental connection to the parent. The Conquest of the Land HistoryHistory ofof plantsplants onon landland •• 500500 myamya -- aa fewfew algaealgae andand lichens.lichens. •• ByBy 460460 myamya -- primitiveprimitive LandLand PlantsPlants,, •• ByBy 425425 myamya -- EarlyEarly VascularVascular PlantsPlants werewere commoncommon •• HowHow diddid itit happen?happen? •• Obstacles?Obstacles? Reconstruction Fossil The Conquest of the Land EarlyEarly innovationsinnovations inin landland plantplant evolution:evolution: 1.1. cuticlecuticle (waxy(waxy -
The Marine Species of Cladophora (Chlorophyta) from the South African East Coast
NovaHedwigia 76 1—2 45—82 Stuttgart, Februar 2003 The marine species of Cladophora (Chlorophyta) from the South African East Coast by F. Leliaert and E. Coppejans Research Group Phycology, Department of Biology, Ghent University, Krijgslaan 281, S8 B-9000 Ghent, Belgium E-mails: [email protected] and [email protected] With 16 figures and 5 tables Leliaert, F. & E. Coppejans (2003): The marine species of Cladophora (Chlorophyta) from the South African East Coast. - Nova Hedwigia 76: 45-82. Abstract: Twelve species of the genus Cladophora occur along the South African East Coast. Detailed descriptions and illustrations are presented. Four species are recorded for the first time in South Africa: C. catenata , C. vagabunda , C. horii and C. dotyana; the last two are also new records for the Indian Ocean. A comparison of the South African C. rugulosa specimens with specimens of C. prolifera from South Africa and other regions have shown that these species are not synonymous as previously considered, leading to the resurrection of C. rugulosa which is probably a South African endemic. Key words: Cladophora, C. catenata , C. dotyana, C. horii, C. prolifera , C. rugulosa , C. vagabunda , South Africa, KwaZulu-Natal. Introduction Cladophora Kützing is one of the largest green-algal genera and has a worldwide distribution. Within the class Cladophorophyceae the genus Cladophora is characterized by its simple thallus architecture: branched, uniseriate filaments of multinucleate cells. Eleven different architectural types (sections) are distinguished in the genus (van den Hoek 1963, 1982; van den Hoek & Chihara 2000). Recent studies based on morphological and molecular data have proven that Cladophora is polyphyletic (van den Hoek 1982; Bakker et al. -
Genetic Dissection of Floridean Starch Synthesis in the Cytosol of the Model Dinoflagellate Crypthecodinium Cohnii
Genetic dissection of floridean starch synthesis in the cytosol of the model dinoflagellate Crypthecodinium cohnii. David Dauvillée, Philippe Deschamps, Jean-Philippe Ral, Charlotte Plancke, Jean-Luc Putaux, Jimi Devassine, Amandine Durand-Terrasson, Aline Devin, Steven Ball To cite this version: David Dauvillée, Philippe Deschamps, Jean-Philippe Ral, Charlotte Plancke, Jean-Luc Putaux, et al.. Genetic dissection of floridean starch synthesis in the cytosol of the model dinoflagellate Cryptheco- dinium cohnii.. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2009, 106 (50), pp.21126-21130. 10.1073/pnas.0907424106. hal- 00436589 HAL Id: hal-00436589 https://hal.archives-ouvertes.fr/hal-00436589 Submitted on 27 Nov 2009 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Biological sciences ‐ Biochemistry Genetic dissection of floridean starch synthesis in the cytosol of the model dinoflagellate Crypthecodinium cohnii David Dauvillée†, Philippe Deschamps†, Jean‐Philippe Ral*, Charlotte Plancke†, -
Monitoring of Biofouling Communities in a Portuguese Port Using a Combined Morphological and Metabarcoding Approach Joana Azevedo 1,2,3, Jorge T
www.nature.com/scientificreports OPEN Monitoring of biofouling communities in a Portuguese port using a combined morphological and metabarcoding approach Joana Azevedo 1,2,3, Jorge T. Antunes1,2,3, André M. Machado 1, Vitor Vasconcelos1,2, Pedro N. Leão 1* & Elsa Froufe 1* Marine biofouling remains an unsolved problem with a serious economic impact on several marine associated industries and constitutes a major vector for the spread of non-indigenous species (NIS). The implementation of biofouling monitoring programs allows for better fouling management and also for the early identifcation of NIS. However, few monitoring studies have used recent methods, such as metabarcoding, that can signifcantly enhance the detection of those species. Here, we employed monthly monitoring of biofouling growth on stainless steel plates in the Atlantic Port of Leixões (Northern Portugal), over one year to test the efect of commercial anti-corrosion paint in the communities. Fouling organisms were identifed by combining morpho-taxonomy identifcation with community DNA metabarcoding using multiple markers (16S rRNA, 18S rRNA, 23S rRNA, and COI genes). The dominant colonizers found at this location were hard foulers, namely barnacles and mussels, while other groups of organisms such as cnidarians, bryozoans, and ascidians were also abundant. Regarding the temporal dynamics of the fouling communities, there was a progressive increase in the colonization of cyanobacteria, green algae, and red algae during the sampled period with the replacement of less abundant groups. The tested anticorrosion paint demonstrated to have a signifcant prevention efect against the biofouling community resulting in a biomass reduction. Our study also reports, for the frst time, 29 NIS in this port, substantiating the need for the implementation of recurring biofouling monitoring programs in ports and harbours. -
Plant Evolution and Diversity B. Importance of Plants C. Where Do Plants Fit, Evolutionarily? What Are the Defining Traits of Pl
Plant Evolution and Diversity Reading: Chap. 30 A. Plants: fundamentals I. What is a plant? What does it do? A. Basic structure and function B. Why are plants important? - Photosynthesize C. What are plants, evolutionarily? -CO2 uptake D. Problems of living on land -O2 release II. Overview of major plant taxa - Water loss A. Bryophytes (seedless, nonvascular) - Water and nutrient uptake B. Pterophytes (seedless, vascular) C. Gymnosperms (seeds, vascular) -Grow D. Angiosperms (seeds, vascular, and flowers+fruits) Where? Which directions? II. Major evolutionary trends - Reproduce A. Vascular tissue, leaves, & roots B. Fertilization without water: pollen C. Dispersal: from spores to bare seeds to seeds in fruits D. Life cycles Æ reduction of gametophyte, dominance of sporophyte Fig. 1.10, Raven et al. B. Importance of plants C. Where do plants fit, evolutionarily? 1. Food – agriculture, ecosystems 2. Habitat 3. Fuel and fiber 4. Medicines 5. Ecosystem services How are protists related to higher plants? Algae are eukaryotic photosynthetic organisms that are not plants. Relationship to the protists What are the defining traits of plants? - Multicellular, eukaryotic, photosynthetic autotrophs - Cell chemistry: - Chlorophyll a and b - Cell walls of cellulose (plus other polymers) - Starch as a storage polymer - Most similar to some Chlorophyta: Charophyceans Fig. 29.8 Points 1. Photosynthetic protists are spread throughout many groups. 2. Plants are most closely related to the green algae, in particular, to the Charophyceans. Coleochaete 3. -
"Plastid Originand Evolution". In: Encyclopedia of Life
CORE Metadata, citation and similar papers at core.ac.uk Provided by University of Queensland eSpace Plastid Origin and Advanced article Evolution Article Contents . Introduction Cheong Xin Chan, Rutgers University, New Brunswick, New Jersey, USA . Primary Plastids and Endosymbiosis . Secondary (and Tertiary) Plastids Debashish Bhattacharya, Rutgers University, New Brunswick, New Jersey, USA . Nonphotosynthetic Plastids . Plastid Theft . Plastid Origin and Eukaryote Evolution . Concluding Remarks Online posting date: 15th November 2011 Plastids (or chloroplasts in plants) are organelles within organisms that emerged ca. 2.8 billion years ago (Olson, which photosynthesis takes place in eukaryotes. The ori- 2006), followed by the evolution of eukaryotic algae ca. 1.5 gin of the widespread plastid traces back to a cyano- billion years ago (Yoon et al., 2004) and finally by the rise of bacterium that was engulfed and retained by a plants ca. 500 million years ago (Taylor, 1988). Photosynthetic reactions occur within the cytosol in heterotrophic protist through a process termed primary prokaryotes. In eukaryotes, however, the reaction takes endosymbiosis. Subsequent (serial) events of endo- place in the organelle, plastid (e.g. chloroplast in plants). symbiosis, involving red and green algae and potentially The plastid also houses many other reactions that are other eukaryotes, yielded the so-called ‘complex’ plastids essential for growth and development in algae and plants; found in photosynthetic taxa such as diatoms, dino- for example, the -
Common Evolutionary Origin of Starch Biosynthetic Enzymes in Green and Red Algae1
J. Phycol. 41, 1131–1141 (2005) r 2005 Phycological Society of America DOI: 10.1111/j.1529-8817.2005.00135.x COMMON EVOLUTIONARY ORIGIN OF STARCH BIOSYNTHETIC ENZYMES IN GREEN AND RED ALGAE1 Nicola J. Patron and Patrick J. Keeling2 Canadian Institute for Advanced Research, Botany Department, University of British Columbia, 3529-6270 University Boulevard, Vancouver, BC, V6T 1Z4, Canada Plastidic starch synthesis in green algae and length and number of branches varying between or- plants occurs via ADP-glucose in likeness to pro- ganisms. The a-1,4-glucan chains are synthesized by karyotes from which plastids have evolved. In con- glycosyltransferases, which use uridine diphosphate trast, floridean starch synthesis in red algae (UDP)-glucose or ADP-glucose as the sugar donor proceeds via uridine diphosphate-glucose in sem- and a preexisting a-1,4-glucan chain as the acceptor. blance to eukaryotic glycogen synthesis and occurs Glycogen is localized in the cytoplasm of bacteria, fun- in the cytosol rather than the plastid. Given the gi, and animal cells. Both eukaryotic and prokaryotic monophyletic origin of all plastids, we investigated glycogens are always amorphous and never form the the origin of the enzymes of the plastid and cyto- crystalline granules characteristic of starch. Red algal solic starch synthetic pathways to determine wheth- starch, thought to be comprised purely of amylopectin er their location reflects their origin—either from chains (Marszalec et al. 2001, Yu et al. 2002), is cyto- the cyanobacterial endosymbiont or from the solic and is known as floridean starch, whereas in eukaryotic host. We report that, despite the com- green algae and plants, starch accumulates within the partmentalization of starch synthesis differing in plastid.