MINI-REVIEW and MEETING REPORT Serine/Threonine

Total Page:16

File Type:pdf, Size:1020Kb

MINI-REVIEW and MEETING REPORT Serine/Threonine Leukemia (2000) 14, 9–21 2000 Macmillan Publishers Ltd All rights reserved 0887-6924/00 $15.00 www.nature.com/leu MINI-REVIEW AND MEETING REPORT Serine/threonine phosphorylation in cytokine signal transduction JA McCubrey1,2, W Stratford May3, V Duronio4 and A Mufson5 1Department of Microbiology and Immunology, East Carolina University School of Medicine, Greenville, NC; 2Member Leo Jenkins Cancer Center, East Carolina University; 3Sealy Center for Oncology/Hematology, UT Medical Branch at Galveston, Galveston, TX, USA; 4Dept of Medicine, University of British Columbia and VH&HSC, Jack Bell Research Centre, Vancouver, BC, Canada; and 5Cancer Immunology and Hematology Branch, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA Over the past decade, the involvement of tyrosine kinases in which included a cytokine/interferon receptor with associated signal transduction pathways evoked by cytokines has been Jak kinases and downstream STAT transcription factors. The intensively investigated. Only relatively recently have the roles of serine/threonine kinases in cytokine-induced signal trans- Jak kinases would be activated upon ligand-induced receptor duction and anti-apoptotic pathways been examined. Cytokine oligomerization. They would phosphorylate STAT molecules receptors without intrinsic kinase activity such as interleukin-3 on tyrosine residues, which would allow the STAT molecules (IL-3), granulocyte–macrophage colony-stimulating factor (GM- to dimerize, promote nuclear translocation, increase their CSF) and the interferons were thought to transmit their regulat- DNA binding activity and regulate gene expression. Many ory signals primarily by the receptor-associated Jak family of cytokine receptors were shown to utilize this basic signal tyrosine kinases. This family of tyrosine kinases activates STAT transcription factors, which subsequently transduced transduction model (eg IL-2R, IL-3R, IL-5R, Epo-R, GM-CSFR their signals into the nucleus to modulate gene expression. and others). As with most hypotheses, however, this simple Cytokine receptors with intrinsic tyrosine kinase activity such model was incomplete, and ignored the branched nodal as c-Kit were initially thought to transduce their signals inde- nature of intracellular signaling cascades. pendently of serine/threonine kinase cascades. Recently, both Studies of the stem cell factor (SCF) induced biological of these types of receptor signaling pathways have been shown activity illustrate well the downstream complexity and to interact with serine/threonine kinase pathways as maximal activation of these tyrosine kinase regulated cascades involve requirement for serine/threonine phosphorylation to integrate serine/threonine phosphorylation modulated by, for example cytokine-induced tyrosine phosphorylation with the down- MAP kinases. A common intermediate pathway initiating from stream signaling cascades regulating differentiation and cell cytokine receptors is the Ras/Raf/MEK/ERK (MAPK) cascade, proliferation. SCF can be synthesized as membrane-bound or which can result in the phosphorylation and activation of soluble forms. However, the differences these two forms have additional downstream kinases and transcription factors such on signal transduction and biological responses are not well as p90Rsk, CREB, Elk and Egr-1. Serine/threonine phosphoryl- ation is also involved in the regulation of the apoptosis-con- understood. SCF transduces its effects through the c-Kit recep- trolling Bcl-2 protein, as certain phosphorylation events tor, which has intrinsic tyrosine kinase activity. Receptors induced by cytokines such as IL-3 are anti-apoptotic, whereas such as c-Kit which have tyrosine kinase activity recruit sig- other phosphorylation events triggered by chemotherapeutic naling molecules which bind the autophosphorylated recep- drugs such as Paclitaxel are associated with cell death. tors or their tyrosine phosphorylated substrates. This binding Serine/threonine phosphorylation is implicated in the etiology occurs via a Src homology 2 domain (SH2, a protein domain of certain human cancers as constitutive serine phosphoryl- ation of STATs 1 and 3 is observed in chronic lymphocytic leu- related to phosphotyrosine binding domain of Src). kemia and can be inhibited by the chemotherapeutic drug flu- Dr David Williams (Howard Hughes Medical Institute, Indi- darabine. Serine/threonine phosphorylation also plays a role in ana University, Indianapolis, IN, USA) has used specific the etiology of immunodeficiencies. Activated STAT5 proteins knockout and transgenic mice to examine the differential are detected in reduced levels in lymphocytes recovered from ability of membrane-bound and soluble forms of SCF to HIV-infected individuals and immunocompromised mice. induce downstream signal pathways.7,8 Dr Williams’ work Serine/threonine phosphorylation may be an important target indicates that activation of extracellular regulated kinases 1 of certain chemotherapeutic drugs which recognize the acti- MAPK MAPK vated proteins. This meeting report and mini-review will dis- and 2 (ERK1 and ERK2, also known as p42 and p44 ), cuss the interactions of serine/threonine kinases with signal p38MAPK and phosphatidylinositol 3-kinase (PI3K) occurs in transduction and apoptotic molecules and how some of these response to bone marrow-derived stromal cells expressing the pathways can be controlled by chemotherapeutic drugs. Leuke- membrane-restricted but not the soluble form of SCF.8 More- mia (2000) 14, 9–21. over, differences were also observed in the development of Keywords: signal transduction; phosphorylation; cytokine; apoptosis; chemotherapeutic drugs the two different types of mice. Introduction of the membrane- restricted form of murine SCF into Steel-Dickie mice, which contain a mutation in the gene encoding SCF, resulted in a significant improvement in the production of red blood cells Introduction and a decrease in bone marrow hypoplasia and runting.2 However, when the full-length soluble form of SCF was intro- In the early 1990s, the identification of the Jak tyrosine kinases duced into these mutant mice, no improvement was observed. and their roles in cytokine signal transduction were eluci- Thus the proliferative and differentiative effects induced by dated.1–6 A relatively simple signal transduction model arose SCF may involve tyrosine and serine/threonine kinases. These data demonstrate that, the two different forms of SCF have distinct biological functions. An overview of some of the Correspondence: JA McCubrey, Department of Microbiology and Immunology, East Carolina University School of Medicine, Green- effects of cytokines on signal transduction pathways is ville, NC 27858, USA; Fax: 252 816 3104 presented in Figure 1. In the following discussion, we will Received 22 September 1999; accepted 4 October 1999 consider the role of the most important serine/threonine kin- Review JA McCubrey et al 10 Figure 1 Cytokine regulation of signal transduction and apoptotic molecules. The effects of cytokines and interferons on signal transduction and apoptotic molecules are indicated. Some of the effects and sites of serine/threonine and tyrosine kinases are highlighted in yellow. A red ‘P’ in a white circle indicates phosphorylated serine/threonine residues on proteins. A black ‘P’ in a white circle indicates phosphorylated tyrosine residues. Cytokine receptors are shown in black, cytokines are shown in red. Solid lines indicate the pathways initiated after receptor ligation. The intermediary signal transducing molecules are indicated in orange. The kinases are indicated in green. Transcription factors are indicated in blue. Pro-apoptotic proteins are indicated in brown, as is the Shp2 phosphatase. Anti-apoptotic molecules are indicated in maroon. Chaperonin molecules are indicated in black. Phospholipid (PL) and diacyl glycerol (DAG) are indicated in orange. Skull and cross bones indicates that apoptosis is induced. Skull and cross bones with a red ‘X’ through it indicates that apoptosis is prevented. ases that participate in cytokine signaling and the biological PI3K is a heterodimeric protein consisting of an 85-kDa consequences of their activation and dysregulation. regulatory subunit, which contains SH2, and SH3 domains (Src homology region 3, a protein domain related to a proline rich binding domain found in Src), and a 110 kDa catalytic Phosphatidylinositol 3-kinase (PI3K) and Akt/protein kinase subunit.9–17 PI3K belongs to a multi-gene family, which has B (PKB) been divided into three classes based on their lipid substrate specificities, the presence of certain key structural motifs and The stimulation of appropriate target cells by cytokines also perhaps by the mechanisms by which the proteins are regu- leads to the rapid activation of PI3K.9–14 P13Ks can catalyze lated. There are three different isoforms of p110 expressed in the conversion of phosphatidylinositol (PtdIns), PtdIns(4)P hematopoietic cells (␣, ␤, ␦) with the ␦ isoform appearing to 9–13 and PtdIns(4,5)P2 into PtdIns(3)P, PtdIns(3,4)P2 and be restricted to only hematopoietic cells. However, the 14 PtdIns(3,4,5)P3. The lipid products of PI3K serve to localize roles that these different isoforms have in cytokine signaling and activate additional downstream signal transduction mol- remain to be fully elucidated. IL-3-induced tyrosine phos- ecules (Rac, protein kinase B (PKB also known as Akt)) in the phorylation of the IL-3 receptor ␤-chain creates a docking site vicinity of the cell membrane.
Recommended publications
  • Regulation of Calcium/Calmodulin-Dependent Protein Kinase II Activation by Intramolecular and Intermolecular Interactions
    8394 • The Journal of Neuroscience, September 29, 2004 • 24(39):8394–8398 Mini-Review Regulation of Calcium/Calmodulin-Dependent Protein Kinase II Activation by Intramolecular and Intermolecular Interactions Leslie C. Griffith Department of Biology and Volen Center for Complex Systems, Brandeis University, Waltham, Massachusetts 02454-9110 Key words: calcium; calmodulin; learning; localization; NMDA; phosphatase; protein kinase As its name implies, calcium/calmodulin-dependent protein ki- The overlap of these subdomains is no accident. Binding of nase II (CaMKII) is calcium dependent. In its basal state, the Ca 2ϩ/CaM is the primary signal for release of autoinhibition. activity of CaMKII is extremely low. Regulation of intracellular Current models of activation posit that the binding of Ca 2ϩ/CaM calcium levels allows the neuron to link activity with phosphor- serves to disrupt the interactions of specific residues within the ylation by CaMKII. This review will briefly summarize our cur- autoinhibitory domain with the catalytic domain (Smith et al., rent understanding of the intramolecular mechanisms of activity 1992). Because there is no crystal structure for the catalytic and regulation and their modulation by Ca 2ϩ/CaM and will then regulatory parts of CaMKII, the interaction face of these two focus on the growing number of other modes of intermolecular domains has been inferred using the effects of charge-reversal regulation of CaMKII activity by substrate and scaffolding mutagenesis on activity and molecular modeling (Yang and molecules. Schulman, 1999). This study confirmed the role of Arg 297 at the P-3 position of the pseudosubstrate ligand (Mukherji and Soder- Regulation of CaMKII by its autoinhibitory domain ling, 1995) and identified residues in the catalytic domain that All members of the CaMKII family (␣, ␤, ␥, and ␦ isozymes) share may have direct interactions with the regulatory region.
    [Show full text]
  • Allosteric Regulation in Drug Design
    Mini Review Curr Trends Biomedical Eng & Biosci Volume 4 Issue 1 - May 2017 Copyright © All rights are reserved by Ashfaq Ur Rehman DOI: 10.19080/CTBEB.2017.04.5555630 Allosteric regulation in drug design Ashfaq Ur Rehman1,2*, Shah Saud3, Nasir Ahmad4, Abdul Wadood2 and R Hamid5 1State Key Laboratory of Microbial Metabolism, Department of Bioinformatics and Biostatistics, China 2Department of Biochemistry, Abdul Wali Khan University Mardan, Pakistan 3Laboratory of Analytical Biochemistry and Bio separation, Shanghai Jiao Tong University, China 4Department of Chemistry, Islama College University Peshawar, Pakistan 5Department of Bioinformatics, Muhammad Ali Jinnah University Islamabad, Pakistan Submission: May 02, 2017; Published: May 23, 2017 *Corresponding author: Ashfaq Ur Rehman, State Key Laboratory of Microbial Metabolism, Department of Bioinformatics and Biostatistics, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, China, Tel: ; Fax: 86-21-34204348; Email: Abstract mechanism, which are initiated through attachment of ligand or inhibitors with the protein or enzymes other than active (orthosteric) sites. ThisProtein mini review and enzymes involved play mechanism, significant types roles and in importancebiological processes of allosteric of all regulations living organisms; in drug theirdesign functions process. are regulated through allosteric Keywords: Allosteric, Activator: Drug design Introduction and ultimately cause disease. While various biological processes expressed the control at different points in life time of protein function is pivotal. As all the cell processes are under carful For the survival of all organisms the significance of protein included regulation of gene expression, translation into protein control and if not properly controls this leads to the abnormality through control of activity and at last degradation of protein [1].
    [Show full text]
  • Tyrosine Kinase – Role and Significance in Cancer
    Int. J. Med. Sci. 2004 1(2): 101-115 101 International Journal of Medical Sciences ISSN 1449-1907 www.medsci.org 2004 1(2):101-115 ©2004 Ivyspring International Publisher. All rights reserved Review Tyrosine kinase – Role and significance in Cancer Received: 2004.3.30 Accepted: 2004.5.15 Manash K. Paul and Anup K. Mukhopadhyay Published:2004.6.01 Department of Biotechnology, National Institute of Pharmaceutical Education and Research, Sector-67, S.A.S Nagar, Mohali, Punjab, India-160062 Abstract Tyrosine kinases are important mediators of the signaling cascade, determining key roles in diverse biological processes like growth, differentiation, metabolism and apoptosis in response to external and internal stimuli. Recent advances have implicated the role of tyrosine kinases in the pathophysiology of cancer. Though their activity is tightly regulated in normal cells, they may acquire transforming functions due to mutation(s), overexpression and autocrine paracrine stimulation, leading to malignancy. Constitutive oncogenic activation in cancer cells can be blocked by selective tyrosine kinase inhibitors and thus considered as a promising approach for innovative genome based therapeutics. The modes of oncogenic activation and the different approaches for tyrosine kinase inhibition, like small molecule inhibitors, monoclonal antibodies, heat shock proteins, immunoconjugates, antisense and peptide drugs are reviewed in light of the important molecules. As angiogenesis is a major event in cancer growth and proliferation, tyrosine kinase inhibitors as a target for anti-angiogenesis can be aptly applied as a new mode of cancer therapy. The review concludes with a discussion on the application of modern techniques and knowledge of the kinome as means to gear up the tyrosine kinase drug discovery process.
    [Show full text]
  • DNA Breakpoint Assay Reveals a Majority of Gross Duplications Occur in Tandem Reducing VUS Classifications in Breast Cancer Predisposition Genes
    © American College of Medical Genetics and Genomics ARTICLE Corrected: Correction DNA breakpoint assay reveals a majority of gross duplications occur in tandem reducing VUS classifications in breast cancer predisposition genes Marcy E. Richardson, PhD1, Hansook Chong, PhD1, Wenbo Mu, MS1, Blair R. Conner, MS1, Vickie Hsuan, MS1, Sara Willett, MS1, Stephanie Lam, MS1, Pei Tsai, CGMBS, MB (ASCP)1, Tina Pesaran, MS, CGC1, Adam C. Chamberlin, PhD1, Min-Sun Park, PhD1, Phillip Gray, PhD1, Rachid Karam, MD, PhD1 and Aaron Elliott, PhD1 Purpose: Gross duplications are ambiguous in terms of clinical cohort, while the remainder have unknown tandem status. Among interpretation due to the limitations of the detection methods that the tandem gross duplications that were eligible for reclassification, cannot infer their context, namely, whether they occur in tandem or 95% of them were upgraded to pathogenic. are duplicated and inserted elsewhere in the genome. We Conclusion: DBA is a novel, high-throughput, NGS-based method investigated the proportion of gross duplications occurring in that informs the tandem status, and thereby the classification of, tandem in breast cancer predisposition genes with the intent of gross duplications. This method revealed that most gross duplica- informing their classifications. tions in the investigated genes occurred in tandem and resulted in a Methods: The DNA breakpoint assay (DBA) is a custom, paired- pathogenic classification, which helps to secure the necessary end, next-generation sequencing (NGS) method designed to treatment options for their carriers. capture and detect deep-intronic DNA breakpoints in gross duplications in BRCA1, BRCA2, ATM, CDH1, PALB2, and CHEK2. Genetics in Medicine (2019) 21:683–693; https://doi.org/10.1038/s41436- Results: DBA allowed us to ascertain breakpoints for 44 unique 018-0092-7 gross duplications from 147 probands.
    [Show full text]
  • AGC Kinases in Mtor Signaling, in Mike Hall and Fuyuhiko Tamanoi: the Enzymes, Vol
    Provided for non-commercial research and educational use only. Not for reproduction, distribution or commercial use. This chapter was originally published in the book, The Enzymes, Vol .27, published by Elsevier, and the attached copy is provided by Elsevier for the author's benefit and for the benefit of the author's institution, for non-commercial research and educational use including without limitation use in instruction at your institution, sending it to specific colleagues who know you, and providing a copy to your institution’s administrator. All other uses, reproduction and distribution, including without limitation commercial reprints, selling or licensing copies or access, or posting on open internet sites, your personal or institution’s website or repository, are prohibited. For exceptions, permission may be sought for such use through Elsevier's permissions site at: http://www.elsevier.com/locate/permissionusematerial From: ESTELA JACINTO, AGC Kinases in mTOR Signaling, In Mike Hall and Fuyuhiko Tamanoi: The Enzymes, Vol. 27, Burlington: Academic Press, 2010, pp.101-128. ISBN: 978-0-12-381539-2, © Copyright 2010 Elsevier Inc, Academic Press. Author's personal copy 7 AGC Kinases in mTOR Signaling ESTELA JACINTO Department of Physiology and Biophysics UMDNJ-Robert Wood Johnson Medical School, Piscataway New Jersey, USA I. Abstract The mammalian target of rapamycin (mTOR), a protein kinase with homology to lipid kinases, orchestrates cellular responses to growth and stress signals. Various extracellular and intracellular inputs to mTOR are known. mTOR processes these inputs as part of two mTOR protein com- plexes, mTORC1 or mTORC2. Surprisingly, despite the many cellular functions that are linked to mTOR, there are very few direct mTOR substrates identified to date.
    [Show full text]
  • Integrated Computational Approaches and Tools for Allosteric Drug Discovery
    International Journal of Molecular Sciences Review Integrated Computational Approaches and Tools for Allosteric Drug Discovery Olivier Sheik Amamuddy 1 , Wayde Veldman 1 , Colleen Manyumwa 1 , Afrah Khairallah 1 , Steve Agajanian 2, Odeyemi Oluyemi 2, Gennady M. Verkhivker 2,3,* and Özlem Tastan Bishop 1,* 1 Research Unit in Bioinformatics (RUBi), Department of Biochemistry and Microbiology, Rhodes University, Grahamstown 6140, South Africa; [email protected] (O.S.A.); [email protected] (W.V.); [email protected] (C.M.); [email protected] (A.K.) 2 Graduate Program in Computational and Data Sciences, Keck Center for Science and Engineering, Schmid College of Science and Technology, Chapman University, One University Drive, Orange, CA 92866, USA; [email protected] (S.A.); [email protected] (O.O.) 3 Department of Biomedical and Pharmaceutical Sciences, Chapman University School of Pharmacy, Irvine, CA 92618, USA * Correspondence: [email protected] (G.M.V.); [email protected] (Ö.T.B.); Tel.: +714-516-4586 (G.M.V.); +27-46-603-8072 (Ö.T.B.) Received: 25 December 2019; Accepted: 21 January 2020; Published: 28 January 2020 Abstract: Understanding molecular mechanisms underlying the complexity of allosteric regulation in proteins has attracted considerable attention in drug discovery due to the benefits and versatility of allosteric modulators in providing desirable selectivity against protein targets while minimizing toxicity and other side effects. The proliferation of novel computational approaches for predicting ligand–protein interactions and binding using dynamic and network-centric perspectives has led to new insights into allosteric mechanisms and facilitated computer-based discovery of allosteric drugs. Although no absolute method of experimental and in silico allosteric drug/site discovery exists, current methods are still being improved.
    [Show full text]
  • PRKCQ Promotes Oncogenic Growth and Anoikis Resistance of a Subset
    Byerly et al. Breast Cancer Research (2016) 18:95 DOI 10.1186/s13058-016-0749-6 RESEARCH ARTICLE Open Access PRKCQ promotes oncogenic growth and anoikis resistance of a subset of triple- negative breast cancer cells Jessica Byerly1†, Gwyneth Halstead-Nussloch1†, Koichi Ito1, Igor Katsyv3 and Hanna Y. Irie1,2* Abstract Background: The protein kinase C (PKC) family comprises distinct classes of proteins, many of which are implicated in diverse cellular functions. Protein tyrosine kinase C theta isoform (PRKCQ)/PKCθ, a member of the novel PKC family, may have a distinct isoform-specific role in breast cancer. PKCθ is preferentially expressed in triple-negative breast cancer (TNBC) compared to other breast tumor subtypes. We hypothesized that PRKCQ/PKCθ critically regulates growth and survival of a subset of TNBC cells. Methods: To elucidate the role of PRKCQ/PKCθ in regulating growth and anoikis resistance, we used both gain and loss of function to modulate expression of PRKCQ. We enhanced expression of PKCθ (kinase-active or inactive) in non-transformed breast epithelial cells (MCF-10A) and assessed effects on epidermal growth factor (EGF)- independent growth, anoikis, and migration. We downregulated expression of PKCθ in TNBC cells, and determined effects on in vitro and in vivo growth and survival. TNBC cells were also treated with a small molecule inhibitor to assess requirement for PKCθ kinase activity in the growth of TNBC cells. Results: PRKCQ/PKCθ can promote oncogenic phenotypes when expressed in non-transformed MCF-10A mammary epithelial cells; PRKCQ/PKCθ enhances anchorage-independent survival, growth-factor-independent proliferation, and migration. PKCθ expression promotes retinoblastoma (Rb) phosphorylation and cell-cycle progression under growth factor-deprived conditions that typically induce cell-cycle arrest of MCF-10A breast epithelial cells.
    [Show full text]
  • Regulation of Calmodulin-Stimulated Cyclic Nucleotide Phosphodiesterase (PDE1): Review
    95-105 5/6/06 13:44 Page 95 INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE 18: 95-105, 2006 95 Regulation of calmodulin-stimulated cyclic nucleotide phosphodiesterase (PDE1): Review RAJENDRA K. SHARMA, SHANKAR B. DAS, ASHAKUMARY LAKSHMIKUTTYAMMA, PONNIAH SELVAKUMAR and ANURAAG SHRIVASTAV Department of Pathology and Laboratory Medicine, College of Medicine, University of Saskatchewan, Cancer Research Division, Saskatchewan Cancer Agency, 20 Campus Drive, Saskatoon SK S7N 4H4, Canada Received January 16, 2006; Accepted March 13, 2006 Abstract. The response of living cells to change in cell 6. Differential inhibition of PDE1 isozymes and its environment depends on the action of second messenger therapeutic applications molecules. The two second messenger molecules cAMP and 7. Role of proteolysis in regulating PDE1A2 Ca2+ regulate a large number of eukaryotic cellular events. 8. Role of PDE1A1 in ischemic-reperfused heart Calmodulin-stimulated cyclic nucleotide phosphodiesterase 9. Conclusion (PDE1) is one of the key enzymes involved in the complex interaction between cAMP and Ca2+ second messenger systems. Some PDE1 isozymes have similar kinetic and 1. Introduction immunological properties but are differentially regulated by Ca2+ and calmodulin. Accumulating evidence suggests that the A variety of cellular activities are regulated through mech- activity of PDE1 is selectively regulated by cross-talk between anisms controlling the level of cyclic nucleotides. These Ca2+ and cAMP signalling pathways. These isozymes are mechanisms include synthesis, degradation, efflux and seque- also further distinguished by various pharmacological agents. stration of cyclic adenosine 3':5'-monophosphate (cAMP) and We have demonstrated a potentially novel regulation of PDE1 cyclic guanosine 3':5'- monophosphate (cGMP) within the by calpain.
    [Show full text]
  • Tyrosine Kinases
    KEVANM SHOKAT MINIREVIEW Tyrosine kinases: modular signaling enzymes with tunable specificities Cytoplasmic tyrosine kinases are composed of modular domains; one (SHl) has catalytic activity, the other two (SH2 and SH3) do not. Kinase specificity is largely determined by the binding preferences of the SH2 domain. Attaching the SHl domain to a new SH2 domain, via protein-protein association or mutation, can thus dramatically change kinase function. Chemistry & Biology August 1995, 2:509-514 Protein kinases are one of the largest protein families identified, This is a result of the overlapping substrate identified to date; over 45 new members are identified specificities of many tyrosine kinases, which makes it each year. It is estimated that up to 4 % of vertebrate pro- difficult to dissect the individual signaling pathways by teins are protein kinases [l].The protein kinases are cate- scanning for unique target motifs [2]. gorized by their specificity for serineithreonine, tyrosine, or histidine residues. Protein tyrosine kinases account for The apparent promiscuity of individual tyrosine kinases roughly half of all kinases. They occur as membrane- is a result of their unique structural organization. bound receptors or cytoplasmic proteins and are involved Enzyme specificity is typically programmed by one in a wide variety of cellular functions, including cytokine binding site, which recognizes the substrate and also con- responses, antigen-dependent immune responses, cellular tains exquisitely oriented active-site functional groups transformation by RNA viruses, oncogenesis, regulation that help to lower the energy of the transition state for of the cell cycle, and modification of cell morphology the conversion of specific substrates to products.Tyrosine (Fig.
    [Show full text]
  • Structure and Evolution of Protein Allosteric Sites
    Structure and evolution of protein allosteric sites by Alejandro Panjkovich Thesis submitted to Universitat Aut`onoma de Barcelona in partial fulfillment of the requirements for the degree of Doctor of Philosophy Director - Prof. Xavier Daura Tesi Doctoral UAB/ANY 2013 Ph.D. Program - Protein Structure and Function Institut de Biotecnologia i Biomedicina caminante, no hay camino, se hace camino al andar Antonio Machado,1912 Acknowledgements First of all I would like to thank my supervisor and mentor Prof. Xavier Daura for his consistent support and trust in my work throughout these years. Xavi, I deeply appreciate the freedom you gave me to develop this project while you were still carefully aware of the small details. Working under your supervision has been a rich and fulfilling experience. Of course, thanks go as well to current and past members of our institute, especially Rita Rocha, Pau Marc Mu˜noz,Oscar Conchillo, Dr. Mart´ınIndarte, Dr. Mario Ferrer, Prof. Isidre Gibert, Dr. Roman Affentranger and Dr. Juan Cedano for their technical and sometimes philo- sophical assistance. Help from the administrative staff was also significant, I would like to thank in particular Eva, Alicia and Miguel who where always ready to help me in sorting out unexpected bureaucratic affairs. I would also like to thank Dr. Mallur Srivatasan Madhusudhan and his group (especially Kuan Pern Tan, Dr. Minh Nguyen and Binh Nguyen), and also Dr. Gloria Fuentes, Cassio Fernandes, Youssef Zaki, Thijs Kooi, Rama Iyer, Christine Low and many others at the Bioinformatics Institute BII - A∗STAR in Singapore for the many interesting discussions and support during my stage over there.
    [Show full text]
  • Protein Kinases Phosphorylation/Dephosphorylation Protein Phosphorylation Is One of the Most Important Mechanisms of Cellular Re
    Protein Kinases Phosphorylation/dephosphorylation Protein phosphorylation is one of the most important mechanisms of cellular responses to growth, stress metabolic and hormonal environmental changes. Most mammalian protein kinases have highly a homologous 30 to 32 kDa catalytic domain. • Most common method of reversible modification - activation and localization • Up to 1/3 of cellular proteins can be phosphorylated • Leads to a very fast response to cellular stress, hormonal changes, learning processes, transcription regulation .... • Different than allosteric or Michealis Menten regulation Protein Kinome To date – 518 human kinases known • 50 kinase families between yeast, invertebrate and mammaliane kinomes • 518 human PKs, most (478) belong to single super family whose catalytic domain are homologous. • Kinase dendrogram displays relative similarities based on catalytic domains. • AGC (PKA, PKG, PKC) • CAMK (Casein kinase 1) • CMGC (CDC, MAPK, GSK3, CLK) • STE (Sterile 7, 11 & 20 kinases) • TK (Tryosine kinases memb and cyto) • TKL (Tyrosine kinase-like) • Phosphorylation stabilized thermodynamically - only half available energy used in adding phosphoryl to protein - change in free energy forces phosphorylation reaction in one direction • Phosphatases reverse direction • The rate of reaction of most phosphatases are 1000 times faster • Phosphorylation occurs on Ser/The or Tyr • What differences occur due to the addition of a phosphoryl group? • Regulation of protein phosphorylation varies depending on protein - some turned on or off
    [Show full text]
  • Understanding Drug-Drug Interactions Due to Mechanism-Based Inhibition in Clinical Practice
    pharmaceutics Review Mechanisms of CYP450 Inhibition: Understanding Drug-Drug Interactions Due to Mechanism-Based Inhibition in Clinical Practice Malavika Deodhar 1, Sweilem B Al Rihani 1 , Meghan J. Arwood 1, Lucy Darakjian 1, Pamela Dow 1 , Jacques Turgeon 1,2 and Veronique Michaud 1,2,* 1 Tabula Rasa HealthCare Precision Pharmacotherapy Research and Development Institute, Orlando, FL 32827, USA; [email protected] (M.D.); [email protected] (S.B.A.R.); [email protected] (M.J.A.); [email protected] (L.D.); [email protected] (P.D.); [email protected] (J.T.) 2 Faculty of Pharmacy, Université de Montréal, Montreal, QC H3C 3J7, Canada * Correspondence: [email protected]; Tel.: +1-856-938-8697 Received: 5 August 2020; Accepted: 31 August 2020; Published: 4 September 2020 Abstract: In an ageing society, polypharmacy has become a major public health and economic issue. Overuse of medications, especially in patients with chronic diseases, carries major health risks. One common consequence of polypharmacy is the increased emergence of adverse drug events, mainly from drug–drug interactions. The majority of currently available drugs are metabolized by CYP450 enzymes. Interactions due to shared CYP450-mediated metabolic pathways for two or more drugs are frequent, especially through reversible or irreversible CYP450 inhibition. The magnitude of these interactions depends on several factors, including varying affinity and concentration of substrates, time delay between the administration of the drugs, and mechanisms of CYP450 inhibition. Various types of CYP450 inhibition (competitive, non-competitive, mechanism-based) have been observed clinically, and interactions of these types require a distinct clinical management strategy. This review focuses on mechanism-based inhibition, which occurs when a substrate forms a reactive intermediate, creating a stable enzyme–intermediate complex that irreversibly reduces enzyme activity.
    [Show full text]