Livestock Parasite Management on High
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Mosquito Species Identification Using Convolutional Neural Networks With
www.nature.com/scientificreports OPEN Mosquito species identifcation using convolutional neural networks with a multitiered ensemble model for novel species detection Adam Goodwin1,2*, Sanket Padmanabhan1,2, Sanchit Hira2,3, Margaret Glancey1,2, Monet Slinowsky2, Rakhil Immidisetti2,3, Laura Scavo2, Jewell Brey2, Bala Murali Manoghar Sai Sudhakar1, Tristan Ford1,2, Collyn Heier2, Yvonne‑Marie Linton4,5,6, David B. Pecor4,5,6, Laura Caicedo‑Quiroga4,5,6 & Soumyadipta Acharya2* With over 3500 mosquito species described, accurate species identifcation of the few implicated in disease transmission is critical to mosquito borne disease mitigation. Yet this task is hindered by limited global taxonomic expertise and specimen damage consistent across common capture methods. Convolutional neural networks (CNNs) are promising with limited sets of species, but image database requirements restrict practical implementation. Using an image database of 2696 specimens from 67 mosquito species, we address the practical open‑set problem with a detection algorithm for novel species. Closed‑set classifcation of 16 known species achieved 97.04 ± 0.87% accuracy independently, and 89.07 ± 5.58% when cascaded with novelty detection. Closed‑set classifcation of 39 species produces a macro F1‑score of 86.07 ± 1.81%. This demonstrates an accurate, scalable, and practical computer vision solution to identify wild‑caught mosquitoes for implementation in biosurveillance and targeted vector control programs, without the need for extensive image database development for each new target region. Mosquitoes are one of the deadliest animals in the world, infecting between 250–500 million people every year with a wide range of fatal or debilitating diseases, including malaria, dengue, chikungunya, Zika and West Nile Virus1. -
Operations and Disease Surveillance
VECTOR CONTROL DISTRICT COUNTY OF SANTA CLARA MONTHLY REPORT MAY 2020 SAVE WATER. NOT MOSQUITOES. DON’T CREATE MOSQUITO HABITAT BY ACCIDENT. Over watering lawns and plants is a large contributor to mosquito breeding. Help fight the bite by: • Fixing leaky faucets and broken sprinklers. • Only apply as much waster as your plants and soil need. Visit SCCVector.org for more information. IN THIS ISSUE MANAGER'S MESSAGE 2 SERVICES AVAILABLE 3 OPERATIONS DATA 4 - 6 WEST NILE 7 - 8 SURVEILLANCE PUBLIC SURVICE 9 REQUESTS VECTOR CONTROL DISTRICT COUNTY OF SANTA CLARA CONSUMER & ENVIRONMENTAL PROTECTION AGENCY PAGE 2 | OPERATIONS AND SURVEILLANCE REPORT MESSAGE FROM THE MANAGER Warm weather is here and that means vectors such as ticks are more active. May was Lyme Disease Awareness Month, and the County of Santa Clara Vector Control District celebrated by participating and advertising the Centers for Disease Control and Prevention’s Lyme Disease Awareness Month Lunch and Learn Series. The weekly series offered interactive presentations on tick surveillance, tick collection, tick bite prevention, and other activities. The District reminds the public to practice preventative measures to avoid coming into contact with ticks. Use insect repellent approved by the Environmental Protection Agency, avoid areas with high grass, and check gear, pets, and children for ticks during and after being in tick habitat. Warm months also mean other vectors such as mosquitoes are more active as well. The District is hard at work monitoring for diseases, such as West Nile virus and Nayer Zahiri eliminating mosquito breeding in areas like marshes, neglected pools, curbs, catch basins, and ponds. -
The Functional Parasitic Worm Secretome: Mapping the Place of Onchocerca Volvulus Excretory Secretory Products
pathogens Review The Functional Parasitic Worm Secretome: Mapping the Place of Onchocerca volvulus Excretory Secretory Products Luc Vanhamme 1,*, Jacob Souopgui 1 , Stephen Ghogomu 2 and Ferdinand Ngale Njume 1,2 1 Department of Molecular Biology, Institute of Biology and Molecular Medicine, IBMM, Université Libre de Bruxelles, Rue des Professeurs Jeener et Brachet 12, 6041 Gosselies, Belgium; [email protected] (J.S.); [email protected] (F.N.N.) 2 Molecular and Cell Biology Laboratory, Biotechnology Unit, University of Buea, Buea P.O Box 63, Cameroon; [email protected] * Correspondence: [email protected] Received: 28 October 2020; Accepted: 18 November 2020; Published: 23 November 2020 Abstract: Nematodes constitute a very successful phylum, especially in terms of parasitism. Inside their mammalian hosts, parasitic nematodes mainly dwell in the digestive tract (geohelminths) or in the vascular system (filariae). One of their main characteristics is their long sojourn inside the body where they are accessible to the immune system. Several strategies are used by parasites in order to counteract the immune attacks. One of them is the expression of molecules interfering with the function of the immune system. Excretory-secretory products (ESPs) pertain to this category. This is, however, not their only biological function, as they seem also involved in other mechanisms such as pathogenicity or parasitic cycle (molting, for example). Wewill mainly focus on filariae ESPs with an emphasis on data available regarding Onchocerca volvulus, but we will also refer to a few relevant/illustrative examples related to other worm categories when necessary (geohelminth nematodes, trematodes or cestodes). -
Full Proposal
FUNDING APPLICATION FOR YOUNG RESEARCH TEAMS - PN-II-RU-TE-2014-4 This document uses Times New Roman font, 12 point, 1.5 line spacing and 2 cm margins. Any modification of these parameters (excepting the figures and their captions), as well as exceeding the maximum number of pages set for each section will lead to the automatic disqualification of the application. The imposed number of pages does not contain the references; these will be written on additional pages. The black text must be kept, as it marks the mandatory information and sections of the application. CUPRINS B. Project leader ................................................................................................................................. 3 B1. Important scientific achievements of the project leader ............................................................ 3 B2. Curriculum vitae ........................................................................................................................ 5 B3. Defining elements of the remarkable scientific achievements of the project leader ................. 7 B3.1 The list of the most important scientific publications from 2004-2014 period ................... 7 B3.2. The autonomy and visibility of the scientific activity. ....................................................... 9 C.Project description ....................................................................................................................... 11 C1. Problems. ................................................................................................................................ -
Data-Driven Identification of Potential Zika Virus Vectors Michelle V Evans1,2*, Tad a Dallas1,3, Barbara a Han4, Courtney C Murdock1,2,5,6,7,8, John M Drake1,2,8
RESEARCH ARTICLE Data-driven identification of potential Zika virus vectors Michelle V Evans1,2*, Tad A Dallas1,3, Barbara A Han4, Courtney C Murdock1,2,5,6,7,8, John M Drake1,2,8 1Odum School of Ecology, University of Georgia, Athens, United States; 2Center for the Ecology of Infectious Diseases, University of Georgia, Athens, United States; 3Department of Environmental Science and Policy, University of California-Davis, Davis, United States; 4Cary Institute of Ecosystem Studies, Millbrook, United States; 5Department of Infectious Disease, University of Georgia, Athens, United States; 6Center for Tropical Emerging Global Diseases, University of Georgia, Athens, United States; 7Center for Vaccines and Immunology, University of Georgia, Athens, United States; 8River Basin Center, University of Georgia, Athens, United States Abstract Zika is an emerging virus whose rapid spread is of great public health concern. Knowledge about transmission remains incomplete, especially concerning potential transmission in geographic areas in which it has not yet been introduced. To identify unknown vectors of Zika, we developed a data-driven model linking vector species and the Zika virus via vector-virus trait combinations that confer a propensity toward associations in an ecological network connecting flaviviruses and their mosquito vectors. Our model predicts that thirty-five species may be able to transmit the virus, seven of which are found in the continental United States, including Culex quinquefasciatus and Cx. pipiens. We suggest that empirical studies prioritize these species to confirm predictions of vector competence, enabling the correct identification of populations at risk for transmission within the United States. *For correspondence: mvevans@ DOI: 10.7554/eLife.22053.001 uga.edu Competing interests: The authors declare that no competing interests exist. -
Biological Diversity in the Patent System
Biological Diversity in the Patent System Paul Oldham1,2*, Stephen Hall1,3, Oscar Forero1,4 1 ESRC Centre for Economic and Social Aspects of Genomics (Cesagen), Lancaster University, Lancaster, United Kingdom, 2 Institute of Advanced Studies, United Nations University, Yokohama, Japan, 3 One World Analytics, Lancaster, United Kingdom, 4 Centre for Development, Environment and Policy, SOAS, University of London, London, United Kingdom Abstract Biological diversity in the patent system is an enduring focus of controversy but empirical analysis of the presence of biodiversity in the patent system has been limited. To address this problem we text mined 11 million patent documents for 6 million Latin species names from the Global Names Index (GNI) established by the Global Biodiversity Information Facility (GBIF) and Encyclopedia of Life (EOL). We identified 76,274 full Latin species names from 23,882 genera in 767,955 patent documents. 25,595 species appeared in the claims section of 136,880 patent documents. This reveals that human innovative activity involving biodiversity in the patent system focuses on approximately 4% of taxonomically described species and between 0.8–1% of predicted global species. In this article we identify the major features of the patent landscape for biological diversity by focusing on key areas including pharmaceuticals, neglected diseases, traditional medicines, genetic engineering, foods, biocides, marine genetic resources and Antarctica. We conclude that the narrow focus of human innovative activity and ownership of genetic resources is unlikely to be in the long term interest of humanity. We argue that a broader spectrum of biodiversity needs to be opened up to research and development based on the principles of equitable benefit-sharing, respect for the objectives of the Convention on Biological Diversity, human rights and ethics. -
Ecology of the Morgan Creek and East Fork of the Salmon River Bighorn Sheep Herds and Management of Bighorn Sheep in Idaho
Utah State University DigitalCommons@USU All Graduate Theses and Dissertations Graduate Studies 5-1971 Ecology of the Morgan Creek and East Fork of the Salmon River Bighorn Sheep Herds and Management of Bighorn Sheep in Idaho James K. Morgan Utah State University Follow this and additional works at: https://digitalcommons.usu.edu/etd Part of the Other Life Sciences Commons Recommended Citation Morgan, James K., "Ecology of the Morgan Creek and East Fork of the Salmon River Bighorn Sheep Herds and Management of Bighorn Sheep in Idaho" (1971). All Graduate Theses and Dissertations. 1593. https://digitalcommons.usu.edu/etd/1593 This Thesis is brought to you for free and open access by the Graduate Studies at DigitalCommons@USU. It has been accepted for inclusion in All Graduate Theses and Dissertations by an authorized administrator of DigitalCommons@USU. For more information, please contact [email protected]. Frontispiece Adult ewe, lamb, and adult ram ECOLOGY Of THE MORGAN CREEK AND EAST FORK OF · T~ SALMON Rl VER . BIGHORN SHEEP HERDS AND MANAGEMENT OFBIGHQRN SHEEP IN IDAHO by James K. Morgan A thesis submitted in partial fulfi Ilment of the requirements for the degree of MASTER OF SCIENCE in Wi I d I i fa B i 0 logy App rov..ed: ~~jo7 Professor' Coi{m 11teec Memt5'#"r Gomm i ttee Merrfber . DeW &r Graduate Stud i es UTAH STATE UNIV~RSITY Logan, utah 1971 ACKNOWLEDGEMENTS Errol Nielson, Big Game Supervisor for the Idaho Fish and Game Department, deserves my warmest thanks for the patience and under standing that encouraged me during difficult times. -
First Report of Rickettsia Raoultii and R. Slovaca in Melophagus Ovinus, The
Liu et al. Parasites & Vectors (2016) 9:600 DOI 10.1186/s13071-016-1885-7 SHORT REPORT Open Access First report of Rickettsia raoultii and R. slovaca in Melophagus ovinus, the sheep ked Dan Liu1†, Yuan-Zhi Wang2†, Huan Zhang1†, Zhi-Qiang Liu3†, Ha-zi Wureli1, Shi-Wei Wang4, Chang-Chun Tu5 and Chuang-Fu Chen1* Abstract Background: Melophagus ovinus (Diptera: Hippoboscidae), a hematophagous ectoparasite, is mainly found in Europe, Northwestern Africa, and Asia. This wingless fly infests sheep, rabbits, and red foxes, and causes inflammation, wool loss and skin damage. Furthermore, this parasite has been shown to transmit diseases, and plays a role as a vector. Herein, we investigated the presence of various Rickettsia species in M. ovinus. Methods: In this study, a total of 95 sheep keds were collected in Kuqa County and Alaer City southern region of Xinjiang Uygur Autonomous Region, northwestern China. First, collected sheep keds were identified on the species level using morphological keys and molecular methods based on a fragment of the 18S ribosomal DNA gene (18S rDNA). Thereafter, to assess the presence of rickettsial DNA in sheep keds, the DNA of individual samples was screened by PCR based on six Rickettsia-specific gene fragments originating from six genes: the 17-kilodalton antigen gene (17-kDa), 16S rRNA gene (rrs),surfacecellantigen4gene(sca4),citratesynthasegene(gltA), and outer membrane protein A and B genes (ompA and ompB). The amplified products were confirmed by sequencing and BLAST analysis (https://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastn&PAGE_TYPE=BlastSearch&LINK_ LOC=blasthome). Results: According to its morphology and results of molecular analysis, the species was identified as Melophagus ovinus,with100%identitytoM. -
ISSN: 2320-5407 Int. J. Adv. Res. 5(3), 972-999 REVIEW ARTICLE ……………………………………………………
ISSN: 2320-5407 Int. J. Adv. Res. 5(3), 972-999 Journal Homepage: - www.journalijar.com Article DOI: 10.21474/IJAR01/3597 DOI URL: http://dx.doi.org/10.21474/IJAR01/3597 REVIEW ARTICLE HAEMONCHUS CONTORTUS AND OVINE HOST: A RETROSPECTIVE REVIEW. *Saeed El-Ashram1,2, Ibrahim Al Nasr3,4, Rashid mehmood5,6, Min Hu7, Li He7, *Xun Suo1 1. National Animal Protozoa Laboratory, College of Veterinary Medicine, China Agricultural University, Beijing 100193, China. 2. Faculty of Science, Kafr El-Sheikh University, Kafr El-Sheikh, Egypt. 3. College of Science and Arts in Unaizah, Qassim University, Unaizah, Saudi Arabia. 4. College of Applied Health Sciences in Ar Rass, Qassim University, Ar Rass 51921, Saudi Arabia. 5. College of information science and technology, Beijing normal university, Beijing, china. 6. Department of Computer Science and Information Technology, University of Management Sciences and Information Technology, Kotli Azad Kashmir, 11100, Pakistan 7. State Key Laboratory of Agricultural Microbiology, Key Laboratory of Development of Veterinary Products, Ministry of Agriculture, College of Veterinary Medicine, Huazhong Agricultural University, Wuhan 430070, Hubei,China. …………………………………………………………………………………………………….... Manuscript Info Abstract ……………………. ……………………………………………………………… Manuscript History Gastrointestinal (GI) parasitic infections are a world-wide problem for Received: 05 January 2017 both small- and large-scale farmers. Infection by GI parasites in Final Accepted: 09 February 2017 ruminants, including sheep and goat can result in harsh economic losses Published: March 2017 in a variety of ways: reproductive inefficiency, decreased work capacity, involuntary culling, diminished food intake, poor animal growth rates and lower weight gains, treatment and management costs, Key words:- Gastrointestinal (GI) parasitic infections; and mortality in heavily parasitized animals. -
The Mosquitoes of Alaska
LIBRAR Y ■JRD FEBE- Î961 THE U. s. DtPÁ¡<,,>^iMl OF AGidCÜLl-yí MOSQUITOES OF ALASKA Agriculture Handbook No. 182 Agricultural Research Service UNITED STATES DEPARTMENT OF AGRICULTURE U < The purpose of this handbook is to present information on the biology, distribu- tion, identification, and control of the species of mosquitoes known to occur in Alaska. Much of this information has been published in short papers in various journals and is not readily available to those who need a comprehensive treatise on this subject ; some of the material has not been published before. The information l)r()UKlit together here will serve as a guide for individuals and communities that have an interest and responsibility in mosquito problems in Alaska. In addition, the military services will have considerable use for this publication at their various installations in Alaska. CuUseta alaskaensis, one of the large "snow mosquitoes" that overwinter as adults and emerge from hiber- nation while much of the winter snow is on the ground. In some localities this species is suJBBciently abundant to cause serious annoy- ance. THE MOSQUITOES OF ALASKA By C. M. GJULLIN, R. I. SAILER, ALAN STONE, and B. V. TRAVIS Agriculture Handbook No. 182 Agricultural Research Service UNITED STATES DEPARTMENT OF AGRICULTURE Washington, D.C. Issued January 1961 For «ale by the Superintendent of Document«. U.S. Government Printing Office Washington 25, D.C. - Price 45 cent» Contents Page Page History of mosquito abundance Biology—Continued and control 1 Oviposition 25 Mosquito literature 3 Hibernation 25 Economic losses 4 Surveys of the mosquito problem. 25 Mosquito-control organizations 5 Mosquito surveys 25 Life history 5 Engineering surveys 29 Eggs_". -
Bulletin No. 99 July
I UNIVERSITY OF WYOMING Agricultural Experiment Station LARAMIE, WYOMING. BULLETIN NO. 99 JULY. 1913 UBRARY O"TH~ UIJV£RSITY Of WYOMIN8 LARAMIE The Life-History ot the Sheep-Tick Melophagus ovinus LEROY D. SWINGLE. Par.. ito!ogiot Bulletins will be sent free upon request. Address Director Experi- ment Station, Laramie, Wyoming. UNIVERSITY OF WYOMING Agricultural Experiment Station LARAMIE. BOARD OF TRUSTEES. Officers. TIMOTHY F. BURKE, 1,1,. B President ARTHUR C. JONES Treasurer FRANK SUMNER BURRAGE, B. A Secretary Executive Committee. A. B. HAMILTON T·. F. BURKE W. S. INGHAM Members. Term Appointed Expires 1908 HON. GIBSON CLARK 1915 1911 HON. W. S. INGHAM, B. A 1915 1913 HON. C. D. SPALDING 1915. 1911 HON. ALEXANDER B. HAMILTON, M. D 1917 1911 HON. LYMAN H. BROOKS 1917 1913 I-ION. CHARLES S. BEACI I. ... .1917 1895 HON. TIMOTHY F. BURKE, LL. B 1919 1913 HON. MARY B. DAVID 1919 HON. ROSE A. BIRD MALEY, State Superintendent of Public Instruction Ex officio PRESIDENT C. A. DUNIWAY, Ph. D Ex officio STATION COUNCIL. C. A. DUNIWA Y, Ph. D , .. President HENRY G. KNIGHT, A. M Director and Agricultural Chemist A. NELSON, Ph. D Botanist and Horticulturist F. E. HEPNER, M. S Assistant Chemist J. A. HILL, B. S '" Wool Specialist O. L. PRIEN, M. D. V Veterinarian A. D. FAVILLE, B. S. , Animal Husbandman J. C. FITTERER, M. S., C. E , Irrigation Engineer S. K. Loy, Ph. D , Chemist T. S. PARSONS, M. S Agronomist L. D. SWINGLE, Ph. D Parasitologist KARL STEIK, M. A , Engineering Chemist JAMES McLAY Stock Superintendent C. -
First Record of Musca Autumnalis De Geer, 1776 (Diptera, Muscidae) in Association with Myiasis in Cattle in the Basque Country (Iberian Peninsula)
Boletín de la Sociedad Entomológica Aragonesa (S.E.A.), nº 55 (31/12/2014): 312–316. FIRST RECORD OF MUSCA AUTUMNALIS DE GEER, 1776 (DIPTERA, MUSCIDAE) IN ASSOCIATION WITH MYIASIS IN CATTLE IN THE BASQUE COUNTRY (IBERIAN PENINSULA) Maite GilArriortua1,2, Marian M. de Pancorbo2 & Marta Saloña Bordas1,2 1 Dpto. de Zoología y Biología Celular Animal, Facultad de Ciencia y Tecnología, Universidad del País Vasco/Euskal Herriko Unibertsitatea (UPV/EHU), Barrio Sarriena s/n 48940 Leioa, Spain 2 BIOMICs Research Group, Centro de Investigación Lascaray Ikergunea, Universidad del País Vasco/Euskal Herriko Unibertsitatea (UPV/EHU), Avda. Miguel de Unamuno 3, Vitoria-Gasteiz, Spain Corresponding author: Dr. Marta Saloña Bordas . Dpto. de Zoología y Biología Celular Animal Facultad de Ciencia y Tecnología; Universidad del País Vasco/Euskal Herriko Unibertsitatea (UPV/EHU); Barrio Sarriena s/n 48940 Leioa, Spain. Tel: +34 946015543 — [email protected] Abstract: Myiasis, understood as the infestation of living vertebrate tissues by dipteran larvae, is usually considered to be linked with tropical and subtropical areas. Nevertheless, it may occur all over the world, causing serious damage to the welfare and the economy of livestock and wild fauna. In Europe it is commonly caused by species of the families Oestridae, Sarcophagidae, Calliphoridae and Muscidae (Diptera), among others. This is the first recorded case of myiasis by Musca autumnalis De Geer, 1776 in cattle in the north of the Iberian Peninsula. An immature specimen was extracted from a cow and identified at the species level, using the mitochondrial gene cytochrome c oxidase subunit I barcode region (COI, 658 bp), as M.