Acteoside from Ligustrum Robustum (Roxb.) Blume Ameliorates Lipid Metabolism and Synthesis in a Hepg2 Cell Model of Lipid Accumulation
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ACAT) in Cholesterol Metabolism: from Its Discovery to Clinical Trials and the Genomics Era
H OH metabolites OH Review Acyl-Coenzyme A: Cholesterol Acyltransferase (ACAT) in Cholesterol Metabolism: From Its Discovery to Clinical Trials and the Genomics Era Qimin Hai and Jonathan D. Smith * Department of Cardiovascular & Metabolic Sciences, Cleveland Clinic, Cleveland, OH 44195, USA; [email protected] * Correspondence: [email protected]; Tel.: +1-216-444-2248 Abstract: The purification and cloning of the acyl-coenzyme A: cholesterol acyltransferase (ACAT) enzymes and the sterol O-acyltransferase (SOAT) genes has opened new areas of interest in cholesterol metabolism given their profound effects on foam cell biology and intestinal lipid absorption. The generation of mouse models deficient in Soat1 or Soat2 confirmed the importance of their gene products on cholesterol esterification and lipoprotein physiology. Although these studies supported clinical trials which used non-selective ACAT inhibitors, these trials did not report benefits, and one showed an increased risk. Early genetic studies have implicated common variants in both genes with human traits, including lipoprotein levels, coronary artery disease, and Alzheimer’s disease; however, modern genome-wide association studies have not replicated these associations. In contrast, the common SOAT1 variants are most reproducibly associated with testosterone levels. Keywords: cholesterol esterification; atherosclerosis; ACAT; SOAT; inhibitors; clinical trial Citation: Hai, Q.; Smith, J.D. Acyl-Coenzyme A: Cholesterol Acyltransferase (ACAT) in Cholesterol Metabolism: From Its 1. Introduction Discovery to Clinical Trials and the The acyl-coenzyme A:cholesterol acyltransferase (ACAT; EC 2.3.1.26) enzyme family Genomics Era. Metabolites 2021, 11, consists of membrane-spanning proteins, which are primarily located in the endoplasmic 543. https://doi.org/10.3390/ reticulum [1]. -
A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated. -
Bimodal Dynamics of Granular Organelles in Primary Renin- Expressing Cells Revealed Using TIRF Microscopy
Heriot-Watt University Research Gateway Bimodal dynamics of granular organelles in primary renin- expressing cells revealed using TIRF microscopy Citation for published version: Buckley, C, Dun, AR, Peter, A, Bellamy, C, Gross, KW, Duncan, RR & Mullins, JJ 2017, 'Bimodal dynamics of granular organelles in primary renin-expressing cells revealed using TIRF microscopy', AJP - Renal Physiology , vol. 312, no. 1, pp. F200-F209. https://doi.org/10.1152/ajprenal.00384.2016 Digital Object Identifier (DOI): 10.1152/ajprenal.00384.2016 Link: Link to publication record in Heriot-Watt Research Portal Document Version: Peer reviewed version Published In: AJP - Renal Physiology General rights Copyright for the publications made accessible via Heriot-Watt Research Portal is retained by the author(s) and / or other copyright owners and it is a condition of accessing these publications that users recognise and abide by the legal requirements associated with these rights. Take down policy Heriot-Watt University has made every reasonable effort to ensure that the content in Heriot-Watt Research Portal complies with UK legislation. If you believe that the public display of this file breaches copyright please contact [email protected] providing details, and we will remove access to the work immediately and investigate your claim. Download date: 27. Sep. 2021 1 Title Page 2 Title: 3 Bimodal dynamics of granular organelles in primary renin-expressing cells revealed using TIRF 4 microscopy 5 6 Running Head: 7 Imaging granule organelle dynamics in renin cells 8 9 Corresponding Author: 10 Charlotte Buckley 1 11 [email protected] 12 13 Other Authors: 14 Alison Dun 2 15 Audrey Peter 1 16 Christopher Bellamy3 17 Kenneth W. -
Gcase and LIMP2 Abnormalities in the Liver of Niemann Pick Type C Mice
International Journal of Molecular Sciences Article GCase and LIMP2 Abnormalities in the Liver of Niemann Pick Type C Mice Martijn J. C. van der Lienden 1 , Jan Aten 2 , André R. A. Marques 3 , Ingeborg S. E. Waas 2, Per W. B. Larsen 2, Nike Claessen 2, Nicole N. van der Wel 4 , Roelof Ottenhoff 5, Marco van Eijk 1 and Johannes M. F. G. Aerts 1,* 1 Department Medical Biochemistry, Leiden University, 2333 CC Leiden, The Netherlands; [email protected] (M.J.C.v.d.L.); [email protected] (M.v.E.) 2 Department of Pathology, Amsterdam UMC, University of Amsterdam, 1100 DD Amsterdam, The Netherlands; [email protected] (J.A.); [email protected] (I.S.E.W.); [email protected] (P.W.B.L.); [email protected] (N.C.) 3 Chronic Diseases Research Centre, Universidade NOVA de Lisboa, 1150-082 Lisbon, Portugal; [email protected] 4 Electron Microscopy Center Amsterdam, Department of Medical Biology, Amsterdam UMC, 1100 DD Amsterdam, The Netherlands; [email protected] 5 Department of Medical Biochemistry, Amsterdam UMC, University of Amsterdam, 1100 DD Amsterdam, The Netherlands; [email protected] * Correspondence: [email protected] Abstract: The lysosomal storage disease Niemann–Pick type C (NPC) is caused by impaired choles- terol efflux from lysosomes, which is accompanied by secondary lysosomal accumulation of sph- Citation: van der Lienden, M.J.C.; ingomyelin and glucosylceramide (GlcCer). Similar to Gaucher disease (GD), patients deficient in Aten, J.; Marques, A.R.A.; Waas, I.S.E.; glucocerebrosidase (GCase) degrading GlcCer, NPC patients show an elevated glucosylsphingosine Larsen, P.W.B.; Claessen, N.; van der and glucosylated cholesterol. -
Development and Validation of a Protein-Based Risk Score for Cardiovascular Outcomes Among Patients with Stable Coronary Heart Disease
Supplementary Online Content Ganz P, Heidecker B, Hveem K, et al. Development and validation of a protein-based risk score for cardiovascular outcomes among patients with stable coronary heart disease. JAMA. doi: 10.1001/jama.2016.5951 eTable 1. List of 1130 Proteins Measured by Somalogic’s Modified Aptamer-Based Proteomic Assay eTable 2. Coefficients for Weibull Recalibration Model Applied to 9-Protein Model eFigure 1. Median Protein Levels in Derivation and Validation Cohort eTable 3. Coefficients for the Recalibration Model Applied to Refit Framingham eFigure 2. Calibration Plots for the Refit Framingham Model eTable 4. List of 200 Proteins Associated With the Risk of MI, Stroke, Heart Failure, and Death eFigure 3. Hazard Ratios of Lasso Selected Proteins for Primary End Point of MI, Stroke, Heart Failure, and Death eFigure 4. 9-Protein Prognostic Model Hazard Ratios Adjusted for Framingham Variables eFigure 5. 9-Protein Risk Scores by Event Type This supplementary material has been provided by the authors to give readers additional information about their work. Downloaded From: https://jamanetwork.com/ on 10/02/2021 Supplemental Material Table of Contents 1 Study Design and Data Processing ......................................................................................................... 3 2 Table of 1130 Proteins Measured .......................................................................................................... 4 3 Variable Selection and Statistical Modeling ........................................................................................ -
Genotyping S328F SNP of Human ACAT2 Among CVD Patients and Normal Population from North Western India and Its Associated Lipid Profile P Balgir, G Kaur, Divya
The Internet Journal of Genomics and Proteomics ISPUB.COM Volume 4 Number 2 Genotyping S328F SNP of human ACAT2 among CVD patients and normal population from North Western India and its associated lipid profile P Balgir, G Kaur, Divya Citation P Balgir, G Kaur, Divya. Genotyping S328F SNP of human ACAT2 among CVD patients and normal population from North Western India and its associated lipid profile. The Internet Journal of Genomics and Proteomics. 2008 Volume 4 Number 2. Abstract Acyl-coenzyme A: cholesterol acyltransferase 2 (ACAT2, EC2.3.1.26) is an integral membrane protein located in the rough endoplasmic reticulum (ER). It maintains a balance between the availability of free and esterified cholesterol and is critically important for cell function. Purpose: The present study discusses the standardization of protocol to delineate the role of SNP S328F in ACAT2 gene. Methods: SNP S328F stability prediction was done using CUPSAT and various parameters like Primer concentration, amount of taq and glycerol etc were studied to set a protocol using Polymerase Chain reaction to achieve a product of 127 base pair. Restriction digestion was done overnight using BsmA1 enzyme to study the genotypes. The present study was used to study the SNP in 200 healthy subjects and 166 CAD patient group.Results: Higher frequency of C allele was observed in CAD patients and higher levels of TC were observed to be related to the presence of allele T which is associated with the presence of hydrophobic amino acid F at position 328. Discussion and Conclusion: Presence of T allele leads to more accumulation of cholesterol esters as it increases the protein stability in the cytoplasmic region and consequently making the individual more susceptible to atherosclerosis. -
Bioinformatics-Based Prediction of Conformational Epitopes for Enterovirus A71 and Coxsackievirus
www.nature.com/scientificreports OPEN Bioinformatics‑based prediction of conformational epitopes for Enterovirus A71 and Coxsackievirus A16 Liping Wang1,4, Miao Zhu1,2,4, Yulu Fang1, Hao Rong1, Liuying Gao1,3, Qi Liao1, Lina Zhang1 & Changzheng Dong1* Enterovirus A71 (EV‑A71), Coxsackievirus A16 (CV‑A16) and CV‑A10 are the major causative agents of hand, foot and mouth disease (HFMD). The conformational epitopes play a vital role in monitoring the antigenic evolution, predicting dominant strains and preparing vaccines. In this study, we employed a Bioinformatics‑based algorithm to predict the conformational epitopes of EV‑A71 and CV‑A16 and compared with that of CV‑A10. Prediction results revealed that the distribution patterns of conformational epitopes of EV‑A71 and CV‑A16 were similar to that of CV‑A10 and their epitopes likewise consisted of three sites: site 1 (on the “north rim” of the canyon around the fvefold vertex), site 2 (on the “puf”) and site 3 (one part was in the “knob” and the other was near the threefold vertex). The reported epitopes highly overlapped with our predicted epitopes indicating the predicted results were reliable. These data suggested that three‑site distribution pattern may be the basic distribution role of epitopes on the enteroviruses capsids. Our prediction results of EV‑A71 and CV‑A16 can provide essential information for monitoring the antigenic evolution of enterovirus. Hand, foot and mouth disease (HFMD) is a common febrile disease caused by human enteroviruses, which mainly inficts infants and young children, resulting in the appearance of vesicular rashes on hands, feet and buccal mucosa1. -
Cmah Deficiency May Lead to Age-Related Hearing Loss by Influencing Mirna-PPAR Mediated Signaling Pathway
Cmah deficiency may lead to age-related hearing loss by influencing miRNA-PPAR mediated signaling pathway Juhong Zhang1, Na Wang2 and Anting Xu2,3 1 Department of Otolaryngology, Shanghai Jiao Tong University Affiliated Sixth People's Hospital South Campus, Southern Medical University Affiliated Fengxian Hospital, Shanghai, China 2 Department of Otolaryngology/Head and Neck Surgery, the Second Hospital of Shandong University, Jinan, China 3 NHC. Key Laboratory of Otorhinolaryngology, Shandong University, Jinan, China ABSTRACT Background. Previous evidence has indicated CMP-Neu5Ac hydroxylase (Cmah) disruption inducesaging-related hearing loss (AHL). However, its function mechanisms remain unclear. This study was to explore the mechanisms of AHL by using microarray analysis in the Cmah deficiency animal model. Methods. Microarray dataset GSE70659 was available from the Gene Expression Omnibus database, including cochlear tissues from wild-type and Cmah-null C57BL/6J mice with old age (12 months, n D 3). Differentially expressed genes (DEGs) were identified using the Linear Models for Microarray data method and a protein– protein interaction (PPI) network was constructed using data from the Search Tool for the Retrieval of Interacting Genes database followed by module analysis. Kyoto Encyclopedia of Genes and Genomes pathway enrichment analysis was performed using the Database for Annotation, Visualization and Integrated Discovery. The upstream miRNAs and potential small-molecule drugs were predicted by miRwalk2.0 and Connectivity Map, respectively. Results. A total of 799 DEGs (449 upregulated and 350 downregulated) were identified. Upregulated DEGs were involved in Cell adhesion molecules (ICAM1, intercellular adhesion molecule 1) and tumor necrosis factor (TNF) signaling pathway (FOS, FBJ Submitted 22 January 2019 osteosarcoma oncogene; ICAM1), while downregulated DEGs participated in PPAR Accepted 26 March 2019 signaling pathway (PPARG, peroxisome proliferator-activated receptor gamma). -
Anti-SOAT2 / ACAT2 Antibody (ARG57814)
Product datasheet [email protected] ARG57814 Package: 250 μl anti-SOAT2 / ACAT2 antibody Store at: -20°C Summary Product Description Rabbit Polyclonal antibody recognizes SOAT2 / ACAT2 Tested Reactivity Hu, Ms, Rat, Pig, Sheep Tested Application ICC/IF, IHC-P, WB Host Rabbit Clonality Polyclonal Isotype IgG Target Name SOAT2 / ACAT2 Antigen Species Human Immunogen Synthetic peptide around the N-terminus of Human SOAT2 / ACAT2. Conjugation Un-conjugated Alternate Names Cholesterol acyltransferase 2; ACACT2; ACAT-2; Sterol O-acyltransferase 2; ACAT2; ARGP2; Acyl- coenzyme A:cholesterol acyltransferase 2; EC 2.3.1.26 Application Instructions Application table Application Dilution ICC/IF 1:200 - 1:500 IHC-P 1:200 - 1:500 WB 1:200 Application Note * The dilutions indicate recommended starting dilutions and the optimal dilutions or concentrations should be determined by the scientist. Calculated Mw 60 kDa Properties Form Liquid Purification Affinity purification with immunogen. Buffer TBS (pH 7.4), 0.02% Sodium azide, 50% Glycerol and 0.1% BSA. Preservative 0.02% Sodium azide Stabilizer 50% Glycerol and 0.1% BSA Storage instruction For continuous use, store undiluted antibody at 2-8°C for up to a week. For long-term storage, aliquot and store at -20°C. Storage in frost free freezers is not recommended. Avoid repeated freeze/thaw cycles. Suggest spin the vial prior to opening. The antibody solution should be gently mixed before use. Note For laboratory research only, not for drug, diagnostic or other use. www.arigobio.com 1/2 Bioinformation Gene Symbol SOAT2 Gene Full Name sterol O-acyltransferase 2 Background Summary:This gene is a member of a small family of acyl coenzyme A:cholesterol acyltransferases. -
P020210615609549638679.Pdf
The Journal of Immunology SCARB2/LIMP-2 Regulates IFN Production of Plasmacytoid Dendritic Cells by Mediating Endosomal Translocation of TLR9 and Nuclear Translocation of IRF7 Hao Guo,*,† Jialong Zhang,* Xuyuan Zhang,*,† Yanbing Wang,* Haisheng Yu,*,† Xiangyun Yin,*,† Jingyun Li,*,† Peishuang Du,* Joel Plumas,‡ Laurence Chaperot,‡ ,x,{ ,‖,# , Jianzhu Chen,* Lishan Su,* Yongjun Liu,* ** and Liguo Zhang* Downloaded from Scavenger receptor class B, member 2 (SCARB2) is essential for endosome biogenesis and reorganization and serves as a receptor for both b-glucocerebrosidase and enterovirus 71. However, little is known about its function in innate immune cells. In this study, we show that, among human peripheral blood cells, SCARB2 is most highly expressed in plasmacytoid dendritic cells (pDCs), and its expression is further upregulated by CpG oligodeoxynucleotide stimulation. Knockdown of SCARB2 in pDC cell line GEN2.2 dramatically reduces CpG-induced type I IFN production. Detailed studies reveal that SCARB2 localizes in late endosome/ http://www.jimmunol.org/ lysosome of pDCs, and knockdown of SCARB2 does not affect CpG oligodeoxynucleotide uptake but results in the retention of TLR9 in the endoplasmic reticulum and an impaired nuclear translocation of IFN regulatory factor 7. The IFN-I production by TLR7 ligand stimulation is also impaired by SCARB2 knockdown. However, SCARB2 is not essential for influenza virus or HSV-induced IFN-I production. These findings suggest that SCARB2 regulates TLR9-dependent IFN-I production of pDCs by mediating endosomal translocation of TLR9 and nuclear translocation of IFN regulatory factor 7. The Journal of Immunology, 2015, 194: 4737–4749. ysosomes are ubiquitous acid membrane-bound organelles which also includes scavenger receptor class B, member 1 involved in the degradation of molecules, complexes, and (SCARB1), and CD36 (5). -
Whole-Exome Sequencing Identifies Causative Mutations in Families
BASIC RESEARCH www.jasn.org Whole-Exome Sequencing Identifies Causative Mutations in Families with Congenital Anomalies of the Kidney and Urinary Tract Amelie T. van der Ven,1 Dervla M. Connaughton,1 Hadas Ityel,1 Nina Mann,1 Makiko Nakayama,1 Jing Chen,1 Asaf Vivante,1 Daw-yang Hwang,1 Julian Schulz,1 Daniela A. Braun,1 Johanna Magdalena Schmidt,1 David Schapiro,1 Ronen Schneider,1 Jillian K. Warejko,1 Ankana Daga,1 Amar J. Majmundar,1 Weizhen Tan,1 Tilman Jobst-Schwan,1 Tobias Hermle,1 Eugen Widmeier,1 Shazia Ashraf,1 Ali Amar,1 Charlotte A. Hoogstraaten,1 Hannah Hugo,1 Thomas M. Kitzler,1 Franziska Kause,1 Caroline M. Kolvenbach,1 Rufeng Dai,1 Leslie Spaneas,1 Kassaundra Amann,1 Deborah R. Stein,1 Michelle A. Baum,1 Michael J.G. Somers,1 Nancy M. Rodig,1 Michael A. Ferguson,1 Avram Z. Traum,1 Ghaleb H. Daouk,1 Radovan Bogdanovic,2 Natasa Stajic,2 Neveen A. Soliman,3,4 Jameela A. Kari,5,6 Sherif El Desoky,5,6 Hanan M. Fathy,7 Danko Milosevic,8 Muna Al-Saffar,1,9 Hazem S. Awad,10 Loai A. Eid,10 Aravind Selvin,11 Prabha Senguttuvan,12 Simone Sanna-Cherchi,13 Heidi L. Rehm,14 Daniel G. MacArthur,14,15 Monkol Lek,14,15 Kristen M. Laricchia,15 Michael W. Wilson,15 Shrikant M. Mane,16 Richard P. Lifton,16,17 Richard S. Lee,18 Stuart B. Bauer,18 Weining Lu,19 Heiko M. Reutter ,20,21 Velibor Tasic,22 Shirlee Shril,1 and Friedhelm Hildebrandt1 Due to the number of contributing authors, the affiliations are listed at the end of this article. -
A Multilevel Screening Strategy Defines a Molecular Fingerprint Of
11116 • The Journal of Neuroscience, July 3, 2013 • 33(27):11116–11135 Development/Plasticity/Repair A Multilevel Screening Strategy Defines a Molecular Fingerprint of Proregenerative Olfactory Ensheathing Cells and Identifies SCARB2, a Protein That Improves Regenerative Sprouting of Injured Sensory Spinal Axons Kasper C. D. Roet,1* Elske H. P. Franssen,1* Frederik M. de Bree,1 Anke H. W. Essing,1 Sjirk-Jan J. Zijlstra,1 Nitish D. Fagoe,1 Hannah M. Eggink,1 Ruben Eggers,1 August B. Smit,2 Ronald E. van Kesteren,2 and Joost Verhaagen1,2 1Department of Neuroregeneration, Netherlands Institute for Neuroscience, An Institute of the Royal Netherlands Academy of Arts and Sciences, 1105 BA Amsterdam, The Netherlands, and 2Department of Molecular and Cellular Neurobiology, Center for Neurogenomics and Cognitive Research, Neuroscience Campus Amsterdam, VU University, 1081 HV Amsterdam, The Netherlands Olfactory ensheathing cells (OECs) have neuro-restorative properties in animal models for spinal cord injury, stroke, and amyotrophic lateral sclerosis. Here we used a multistep screening approach to discover genes specifically contributing to the regeneration-promoting properties of OECs. Microarray screening of the injured olfactory pathway and of cultured OECs identified 102 genes that were subse- quently functionally characterized in cocultures of OECs and primary dorsal root ganglion (DRG) neurons. Selective siRNA-mediated knockdown of 16 genes in OECs (ADAMTS1, BM385941, FZD1, GFRA1, LEPRE1, NCAM1, NID2, NRP1, MSLN, RND1, S100A9, SCARB2, SERPINI1, SERPINF1, TGFB2, and VAV1) significantly reduced outgrowth of cocultured DRG neurons, indicating that endogenous expression of these genes in OECs supports neurite extension of DRG neurons. In a gain-of-function screen for 18 genes, six (CX3CL1, FZD1, LEPRE1, S100A9, SCARB2, and SERPINI1) enhanced and one (TIMP2) inhibited neurite growth.