Bimodal Dynamics of Granular Organelles in Primary Renin- Expressing Cells Revealed Using TIRF Microscopy
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Acteoside from Ligustrum Robustum (Roxb.) Blume Ameliorates Lipid Metabolism and Synthesis in a Hepg2 Cell Model of Lipid Accumulation
ORIGINAL RESEARCH published: 24 May 2019 doi: 10.3389/fphar.2019.00602 Acteoside From Ligustrum robustum (Roxb.) Blume Ameliorates Lipid Metabolism and Synthesis in a HepG2 Cell Model of Lipid Accumulation Le Sun 1,2†, Fan Yu 1,2†, Fan Yi 3, Lijia Xu 1,2*, Baoping Jiang 1,2*, Liang Le 1,2 and Peigen Xiao 1,2 1 Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing, China, 2 Key Laboratory of Bioactive Substances and Resources Utilization of Chinese Herbal Medicine, Ministry of Education, Beijing, China, 3 Key Laboratory of Cosmetics, China National Light Industry, Beijing Technology and Business Edited by: University, Beijing, China Min Ye, Peking University, China We aimed to ascertain the mechanism underlying the effects of acteoside (ACT) from Reviewer: Wei Song, Ligustrum robustum (Roxb.) Blume (Oleaceae) on lipid metabolism and synthesis. ACT, Peking Union Medical College a water-soluble phenylpropanoid glycoside, is the most abundant and major active Hospital (CAMS), component of L. robustum; the leaves of L. robustum, known as kudingcha (bitter tea), China Shuai Ji, have long been used in China as an herbal tea for weight loss. Recently, based on previous Xuzhou Medical University, studies, our team reached a preliminary conclusion that phenylpropanoid glycosides from China L. robustum most likely contribute substantially to reducing lipid levels, but the mechanism *Correspondence: Lijia Xu remains unclear. Here, we conducted an in silico screen of currently known phenylethanoid [email protected] glycosides from L. robustum and attempted to explore the hypolipidemic mechanism of Baoping Jiang ACT, the representative component of phenylethanoid glycosides in L. -
A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated. -
Gcase and LIMP2 Abnormalities in the Liver of Niemann Pick Type C Mice
International Journal of Molecular Sciences Article GCase and LIMP2 Abnormalities in the Liver of Niemann Pick Type C Mice Martijn J. C. van der Lienden 1 , Jan Aten 2 , André R. A. Marques 3 , Ingeborg S. E. Waas 2, Per W. B. Larsen 2, Nike Claessen 2, Nicole N. van der Wel 4 , Roelof Ottenhoff 5, Marco van Eijk 1 and Johannes M. F. G. Aerts 1,* 1 Department Medical Biochemistry, Leiden University, 2333 CC Leiden, The Netherlands; [email protected] (M.J.C.v.d.L.); [email protected] (M.v.E.) 2 Department of Pathology, Amsterdam UMC, University of Amsterdam, 1100 DD Amsterdam, The Netherlands; [email protected] (J.A.); [email protected] (I.S.E.W.); [email protected] (P.W.B.L.); [email protected] (N.C.) 3 Chronic Diseases Research Centre, Universidade NOVA de Lisboa, 1150-082 Lisbon, Portugal; [email protected] 4 Electron Microscopy Center Amsterdam, Department of Medical Biology, Amsterdam UMC, 1100 DD Amsterdam, The Netherlands; [email protected] 5 Department of Medical Biochemistry, Amsterdam UMC, University of Amsterdam, 1100 DD Amsterdam, The Netherlands; [email protected] * Correspondence: [email protected] Abstract: The lysosomal storage disease Niemann–Pick type C (NPC) is caused by impaired choles- terol efflux from lysosomes, which is accompanied by secondary lysosomal accumulation of sph- Citation: van der Lienden, M.J.C.; ingomyelin and glucosylceramide (GlcCer). Similar to Gaucher disease (GD), patients deficient in Aten, J.; Marques, A.R.A.; Waas, I.S.E.; glucocerebrosidase (GCase) degrading GlcCer, NPC patients show an elevated glucosylsphingosine Larsen, P.W.B.; Claessen, N.; van der and glucosylated cholesterol. -
Development and Validation of a Protein-Based Risk Score for Cardiovascular Outcomes Among Patients with Stable Coronary Heart Disease
Supplementary Online Content Ganz P, Heidecker B, Hveem K, et al. Development and validation of a protein-based risk score for cardiovascular outcomes among patients with stable coronary heart disease. JAMA. doi: 10.1001/jama.2016.5951 eTable 1. List of 1130 Proteins Measured by Somalogic’s Modified Aptamer-Based Proteomic Assay eTable 2. Coefficients for Weibull Recalibration Model Applied to 9-Protein Model eFigure 1. Median Protein Levels in Derivation and Validation Cohort eTable 3. Coefficients for the Recalibration Model Applied to Refit Framingham eFigure 2. Calibration Plots for the Refit Framingham Model eTable 4. List of 200 Proteins Associated With the Risk of MI, Stroke, Heart Failure, and Death eFigure 3. Hazard Ratios of Lasso Selected Proteins for Primary End Point of MI, Stroke, Heart Failure, and Death eFigure 4. 9-Protein Prognostic Model Hazard Ratios Adjusted for Framingham Variables eFigure 5. 9-Protein Risk Scores by Event Type This supplementary material has been provided by the authors to give readers additional information about their work. Downloaded From: https://jamanetwork.com/ on 10/02/2021 Supplemental Material Table of Contents 1 Study Design and Data Processing ......................................................................................................... 3 2 Table of 1130 Proteins Measured .......................................................................................................... 4 3 Variable Selection and Statistical Modeling ........................................................................................ -
Bioinformatics-Based Prediction of Conformational Epitopes for Enterovirus A71 and Coxsackievirus
www.nature.com/scientificreports OPEN Bioinformatics‑based prediction of conformational epitopes for Enterovirus A71 and Coxsackievirus A16 Liping Wang1,4, Miao Zhu1,2,4, Yulu Fang1, Hao Rong1, Liuying Gao1,3, Qi Liao1, Lina Zhang1 & Changzheng Dong1* Enterovirus A71 (EV‑A71), Coxsackievirus A16 (CV‑A16) and CV‑A10 are the major causative agents of hand, foot and mouth disease (HFMD). The conformational epitopes play a vital role in monitoring the antigenic evolution, predicting dominant strains and preparing vaccines. In this study, we employed a Bioinformatics‑based algorithm to predict the conformational epitopes of EV‑A71 and CV‑A16 and compared with that of CV‑A10. Prediction results revealed that the distribution patterns of conformational epitopes of EV‑A71 and CV‑A16 were similar to that of CV‑A10 and their epitopes likewise consisted of three sites: site 1 (on the “north rim” of the canyon around the fvefold vertex), site 2 (on the “puf”) and site 3 (one part was in the “knob” and the other was near the threefold vertex). The reported epitopes highly overlapped with our predicted epitopes indicating the predicted results were reliable. These data suggested that three‑site distribution pattern may be the basic distribution role of epitopes on the enteroviruses capsids. Our prediction results of EV‑A71 and CV‑A16 can provide essential information for monitoring the antigenic evolution of enterovirus. Hand, foot and mouth disease (HFMD) is a common febrile disease caused by human enteroviruses, which mainly inficts infants and young children, resulting in the appearance of vesicular rashes on hands, feet and buccal mucosa1. -
P020210615609549638679.Pdf
The Journal of Immunology SCARB2/LIMP-2 Regulates IFN Production of Plasmacytoid Dendritic Cells by Mediating Endosomal Translocation of TLR9 and Nuclear Translocation of IRF7 Hao Guo,*,† Jialong Zhang,* Xuyuan Zhang,*,† Yanbing Wang,* Haisheng Yu,*,† Xiangyun Yin,*,† Jingyun Li,*,† Peishuang Du,* Joel Plumas,‡ Laurence Chaperot,‡ ,x,{ ,‖,# , Jianzhu Chen,* Lishan Su,* Yongjun Liu,* ** and Liguo Zhang* Downloaded from Scavenger receptor class B, member 2 (SCARB2) is essential for endosome biogenesis and reorganization and serves as a receptor for both b-glucocerebrosidase and enterovirus 71. However, little is known about its function in innate immune cells. In this study, we show that, among human peripheral blood cells, SCARB2 is most highly expressed in plasmacytoid dendritic cells (pDCs), and its expression is further upregulated by CpG oligodeoxynucleotide stimulation. Knockdown of SCARB2 in pDC cell line GEN2.2 dramatically reduces CpG-induced type I IFN production. Detailed studies reveal that SCARB2 localizes in late endosome/ http://www.jimmunol.org/ lysosome of pDCs, and knockdown of SCARB2 does not affect CpG oligodeoxynucleotide uptake but results in the retention of TLR9 in the endoplasmic reticulum and an impaired nuclear translocation of IFN regulatory factor 7. The IFN-I production by TLR7 ligand stimulation is also impaired by SCARB2 knockdown. However, SCARB2 is not essential for influenza virus or HSV-induced IFN-I production. These findings suggest that SCARB2 regulates TLR9-dependent IFN-I production of pDCs by mediating endosomal translocation of TLR9 and nuclear translocation of IFN regulatory factor 7. The Journal of Immunology, 2015, 194: 4737–4749. ysosomes are ubiquitous acid membrane-bound organelles which also includes scavenger receptor class B, member 1 involved in the degradation of molecules, complexes, and (SCARB1), and CD36 (5). -
Whole-Exome Sequencing Identifies Causative Mutations in Families
BASIC RESEARCH www.jasn.org Whole-Exome Sequencing Identifies Causative Mutations in Families with Congenital Anomalies of the Kidney and Urinary Tract Amelie T. van der Ven,1 Dervla M. Connaughton,1 Hadas Ityel,1 Nina Mann,1 Makiko Nakayama,1 Jing Chen,1 Asaf Vivante,1 Daw-yang Hwang,1 Julian Schulz,1 Daniela A. Braun,1 Johanna Magdalena Schmidt,1 David Schapiro,1 Ronen Schneider,1 Jillian K. Warejko,1 Ankana Daga,1 Amar J. Majmundar,1 Weizhen Tan,1 Tilman Jobst-Schwan,1 Tobias Hermle,1 Eugen Widmeier,1 Shazia Ashraf,1 Ali Amar,1 Charlotte A. Hoogstraaten,1 Hannah Hugo,1 Thomas M. Kitzler,1 Franziska Kause,1 Caroline M. Kolvenbach,1 Rufeng Dai,1 Leslie Spaneas,1 Kassaundra Amann,1 Deborah R. Stein,1 Michelle A. Baum,1 Michael J.G. Somers,1 Nancy M. Rodig,1 Michael A. Ferguson,1 Avram Z. Traum,1 Ghaleb H. Daouk,1 Radovan Bogdanovic,2 Natasa Stajic,2 Neveen A. Soliman,3,4 Jameela A. Kari,5,6 Sherif El Desoky,5,6 Hanan M. Fathy,7 Danko Milosevic,8 Muna Al-Saffar,1,9 Hazem S. Awad,10 Loai A. Eid,10 Aravind Selvin,11 Prabha Senguttuvan,12 Simone Sanna-Cherchi,13 Heidi L. Rehm,14 Daniel G. MacArthur,14,15 Monkol Lek,14,15 Kristen M. Laricchia,15 Michael W. Wilson,15 Shrikant M. Mane,16 Richard P. Lifton,16,17 Richard S. Lee,18 Stuart B. Bauer,18 Weining Lu,19 Heiko M. Reutter ,20,21 Velibor Tasic,22 Shirlee Shril,1 and Friedhelm Hildebrandt1 Due to the number of contributing authors, the affiliations are listed at the end of this article. -
A Multilevel Screening Strategy Defines a Molecular Fingerprint Of
11116 • The Journal of Neuroscience, July 3, 2013 • 33(27):11116–11135 Development/Plasticity/Repair A Multilevel Screening Strategy Defines a Molecular Fingerprint of Proregenerative Olfactory Ensheathing Cells and Identifies SCARB2, a Protein That Improves Regenerative Sprouting of Injured Sensory Spinal Axons Kasper C. D. Roet,1* Elske H. P. Franssen,1* Frederik M. de Bree,1 Anke H. W. Essing,1 Sjirk-Jan J. Zijlstra,1 Nitish D. Fagoe,1 Hannah M. Eggink,1 Ruben Eggers,1 August B. Smit,2 Ronald E. van Kesteren,2 and Joost Verhaagen1,2 1Department of Neuroregeneration, Netherlands Institute for Neuroscience, An Institute of the Royal Netherlands Academy of Arts and Sciences, 1105 BA Amsterdam, The Netherlands, and 2Department of Molecular and Cellular Neurobiology, Center for Neurogenomics and Cognitive Research, Neuroscience Campus Amsterdam, VU University, 1081 HV Amsterdam, The Netherlands Olfactory ensheathing cells (OECs) have neuro-restorative properties in animal models for spinal cord injury, stroke, and amyotrophic lateral sclerosis. Here we used a multistep screening approach to discover genes specifically contributing to the regeneration-promoting properties of OECs. Microarray screening of the injured olfactory pathway and of cultured OECs identified 102 genes that were subse- quently functionally characterized in cocultures of OECs and primary dorsal root ganglion (DRG) neurons. Selective siRNA-mediated knockdown of 16 genes in OECs (ADAMTS1, BM385941, FZD1, GFRA1, LEPRE1, NCAM1, NID2, NRP1, MSLN, RND1, S100A9, SCARB2, SERPINI1, SERPINF1, TGFB2, and VAV1) significantly reduced outgrowth of cocultured DRG neurons, indicating that endogenous expression of these genes in OECs supports neurite extension of DRG neurons. In a gain-of-function screen for 18 genes, six (CX3CL1, FZD1, LEPRE1, S100A9, SCARB2, and SERPINI1) enhanced and one (TIMP2) inhibited neurite growth. -
Straightjacket/Α2δ3 Deregulation Is Associated with Cardiac Conduction Defects in Myotonic Dystrophy Type 1
bioRxiv preprint doi: https://doi.org/10.1101/431569; this version posted October 2, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Straightjacket/α2δ3 deregulation is associated with cardiac conduction defects in Myotonic Dystrophy type 1 Emilie Plantié1, Masayuki Nakamori2, Yoan Renaud3, Aline Huguet4, Caroline Choquet5, Cristiana Dondi1, Lucile Miquerol5, Masanori Takahashi6, Geneviève Gourdon4, Guillaume Junion1, Teresa Jagla1, Monika Zmojdzian1* and Krzysztof Jagla1* 1 GReD, CNRS UMR6293, INSERM U1103, University of Clermont Auvergne, 28, Place Henri Dunant, 63000 Clermont-Ferrand, France 2 Department of Neurology, Osaka University Graduate School of Medicine, 2-2 Yamadaoka, Suita, Osaka 565-0871, Japan 3 BYONET (www.byonet.fr) 4 Imagine Institute, Inserm UMR1163, 24, boulevard de Montparnasse, 75015 Paris, France 5 Aix-Marseille University, CNRS UMR7288, IBDM Luminy Campus Case 907, 13288 Marseille cedex 9, France 6 Department of Functional Diagnostic Science, Osaka University Graduate School of Medicine, 1-7 Yamadaoka, Suita, Osaka 565-0871, Japan • Correspondence to: Krzysztof Jagla [email protected] and Monika Zmojdzian [email protected] tel. +33 473178181; GReD, CNRS UMR6293, INSERM U1103, University of Clermont Auvergne, 28, Place Henri Dunant, 63000 Clermont-Ferrand, France 1 bioRxiv preprint doi: https://doi.org/10.1101/431569; this version posted October 2, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. ABSTRACT Cardiac conduction defects decrease life expectancy in myotonic dystrophy type 1 (DM1), a complex toxic CTG repeat disorder involving misbalance between two RNA- binding factors, MBNL1 and CELF1. -
LIMP-2 Expression Is Critical for Β-Glucocerebrosidase Activity and Α-Synuclein Clearance
LIMP-2 expression is critical for β-glucocerebrosidase activity and α-synuclein clearance Michelle Rothauga,1, Friederike Zunkea,1, Joseph R. Mazzullib, Michaela Schweizerc, Hermann Altmeppend, Renate Lüllmann-Rauche, Wouter W. Kallemeijnf, Paulo Gasparg, Johannes M. Aertsf, Markus Glatzeld, Paul Saftiga, Dimitri Kraincb, Michael Schwakea,h, and Judith Blanza,2 aInstitute of Biochemistry and eAnatomical Institute, Christian Albrechts University of Kiel, 24098 Kiel, Germany; bDepartment of Neurology, Northwestern University Feinberg School of Medicine, Chicago, IL 60611; cDepartment of Electron Microscopy, Centre for Molecular Neurobiology, and dInstitute of Neuropathology, University Medical Centre Hamburg-Eppendorf, 20246 Hamburg, Germany; fDepartment of Medical Biochemistry, Academic Medical Centre, University of Amsterdam, 1105 AZ Amsterdam, The Netherlands; gUnidade de Biologia do Lisossoma e do Peroxissoma, Instituto de Biologia Molecular e Celular, 4150-180 Porto, Portugal; and hFaculty of Chemistry/Biochemistry III, University of Bielefeld, 33615 Bielefeld, Germany Edited by Thomas C. Südhof, Stanford University School of Medicine, Stanford, CA, and approved September 15, 2014 (received for review April 4, 2014) Mutations within the lysosomal enzyme β-glucocerebrosidase (GC) transgenic mouse models of GD and PD (16). Moreover, recent data result in Gaucher disease and represent a major risk factor for suggestthataccumulatedα-syn disrupts ER/Golgi trafficking of GC, developing Parkinson disease (PD). Loss of GC activity leads to -
Type I Interferon Production of Plasmacytoid Dendritic Cells Under Control
International Journal of Molecular Sciences Review Type I Interferon Production of Plasmacytoid Dendritic Cells under Control Dóra Bencze 1,2,†, Tünde Fekete 1,† and Kitti Pázmándi 1,* 1 Department of Immunology, Faculty of Medicine, University of Debrecen, 1 Egyetem Square, H-4032 Debrecen, Hungary; [email protected] (D.B.); [email protected] (T.F.) 2 Doctoral School of Molecular Cell and Immune Biology, University of Debrecen, 1 Egyetem Square, H-4032 Debrecen, Hungary * Correspondence: [email protected]; Tel./Fax: +36-52-417-159 † These authors have contributed equally to this work and share first authorship. Abstract: One of the most powerful and multifaceted cytokines produced by immune cells are type I interferons (IFNs), the basal secretion of which contributes to the maintenance of immune homeostasis, while their activation-induced production is essential to effective immune responses. Although, each cell is capable of producing type I IFNs, plasmacytoid dendritic cells (pDCs) possess a unique ability to rapidly produce large amounts of them. Importantly, type I IFNs have a prominent role in the pathomechanism of various pDC-associated diseases. Deficiency in type I IFN production increases the risk of more severe viral infections and the development of certain allergic reactions, and supports tumor resistance; nevertheless, its overproduction promotes autoimmune reactions. Therefore, the tight regulation of type I IFN responses of pDCs is essential to maintain an adequate level of immune response without causing adverse effects. Here, our goal was to summarize those endogenous factors that can influence the type I IFN responses of pDCs, and thus might serve as possible therapeutic targets in pDC-associated diseases. -
Proteomic Analysis of Aged Microglia
Flowers et al. Journal of Neuroinflammation (2017) 14:96 DOI 10.1186/s12974-017-0840-7 RESEARCH Open Access Proteomic analysis of aged microglia: shifts in transcription, bioenergetics, and nutrient response Antwoine Flowers1,2, Harris Bell-Temin3, Ahmad Jalloh1,2, Stanley M. Stevens Jr.3 and Paula C. Bickford1,2,4* Abstract Background: Age is the primary risk factor for many diseases. As such, age is a critical co-factor for examination in order to understand the progression and potential intervention in disease progression. Studies examining both the phenotype and transcriptome of aged microglia demonstrated a propensity for the development of a pro-inflammatory phenotype. Less well studied is the concomitant blunting of anti-inflammatory aspects of microglial function with age which also impact plasticity and repair in the CNS. Methods: This study utilizes mass spectrometry-based proteomics to compare primary microglia from young andagedanimals. Results: This study revealed alterations in three clusters of inter-related proteins. The three pathways were inflammatory signaling, mitochondrial function, and cellular metabolism. Analysis of these clusters identified the protein rapamycin-insensitive companion of mTOR (RICTOR), a component of the mTORC2 complex, as a novel upstream regulator of several biological functions that are altered with age and potentially linked to phenotype development. A decrease in mTORC2-dependent AKT S473 phosphorylation, as assessed by insulin growth factor (IGF) treatment, was observed in aged microglia. This novel finding was confirmed by genetic manipulation of the microglial cell line. BV2 cells with diminished RICTOR displayed a phenotype that was strikingly similar to that of aged microglia. This finding is particularly relevant as the mTOR pathway already has a number of pharmacological modulators used clinically.