Organic Molecules

Total Page:16

File Type:pdf, Size:1020Kb

Organic Molecules Modern habitability and the possibility of extant life on Mars Pascale Ehrenfreund1,2 1Space Policy Institute, Washington DC, USA 2Leiden Institute of Chemistry, NL Origin of Life Abiotic synthetic reactions Organics from space on the early Earth Prebiotic soup The origin of life First evidence for Origin of Life on Earth ….. life ~ 3.5 billion years ago; prokaryotic, anaerobic, Life needs …. heterotrophic ? • Water • Energy • Organic molecules Information mechanism Bacteria rule the Earth Credit: Tullis Onstott 5 x 1030 ? 92 % of bacteria live underground Bacteria produce oxygen, fix nitrogen, they decay as pollutants and dissolve rocks …. 4000 species in a gram of soil Extreme Life …. Hydrothermal vents Antarctica Nymph Greek Iron Spring Cyanidium caldarium at pH~3.3 und 42 C Norris Geyser Basin, Yellowstone Park PotentialPotential sources sources of organic matter of on organics Mars on Mars The direct synthesis of organic compounds and/or the development of life may have taken place on Mars early in its history … Meteoritic infall should have delivered organic compounds to Mars at a rate of 2.4 x 106 kg yr-1 or ~ 0.1 nm Abiogenic synthesis coverage per year (Zent 1994, Flynn 1996) CO2 /H2O/C x Hy + energy organics LOCALIZED AND LOW BIOMASS Exogenous infall Martian conditions 15 -1 -2 UV flux (190-325 nm) Flux: ~1.4 × 10 photons s cm -2 Intensity: ~37 W m Ionizing radiation Dose: ~ 0.2 Gy/year Atmospheric composition 95.3% CO2 ; 2.7% N2 ; 1.6% Ar; 0.13% O2; 0.03% H2O, CH4 ? photochemically produced transient species Surface temperature 140 to 300 K; average: 210 K Oxidants H2 O2 ; -Fe2 O3 ; dry acids from SO3 ; perchlorates ; O3 , O2 , O … Dust/atmospheric pressure Plasma exposure, winds; 7mbar Extant life may be present in ecological niches and in the subsurface SearchingSearching for for life onextant Mars ….. life on Mars … Growing life Dormant life Geochemical tracers MEPAG Goal 1: Objective B (2010) Evidence of ongoing metabolism/chemical gradients Characterize organic chemistry and bioessential elements Seek evidence of organic and mineral structure that may be associated with life Martian habitats Caves: Pit craters in Tharsis region may host cave entrances (Cushing 2011); access to minerals, gases, ices, and any subterranean life: ACCESS Mars (ISU 2009) Hydrothermal vents: Deposits of pure silica identified; (geologic activity and water/ice); on Earth hydrothermal deposits team with life Subsurface: Life has been detected a few km below Earth’s surface; bacteria, recently nematodes in 1.3 km depth (Halicephalobus mephisto) Subsurface ice: Polar regions, northern plains, impact basins and rims etc.; microbes may be preserved Gaetan Borgonie Martian habitats Evaporite deposits: Upwelling groundwater is responsible for the abundant evaporite deposits; Terra Sirenum chloride salt deposits similar to Atacama Desert salt deposits Antarctic-like paleosols: Microbial life in paleosols with minor amounts of Fe available, argues for potential of microbial life Surface rocks: Clay-carbonate rocks Nili Fossae identified (CRISM/HiRISE) that date back to the Noachian period – conditions in the region could have been suitable for life (analog to Pilbara, Australia) Defining extant life environments on Mars Imaging of Mars habitable regions Earth analogue field research in extreme environments Laboratory simulations of biota and biomarkers under Mars condition: radiation, temperature, oxidation, racemization… Experiments in Low Earth Orbit (ISS and small platforms) Supporting surface chemistry and theoretical modelling Optimize payload performance for missions in development Optimize extraction procedures, sample handling, sample processing and planetary protection Optimize geo-context for biomarker measurements, concerning deposition history, diagenesis and instrument performance Adapt extant life search strategies to landing site constraints Na+ 163 JPL/Ames/Leiden crew in the - NO3 64 Atacama Desert - Peru 2005 pH 4 AA 1000 ppb Peeters et al. 2009 Na+ 6780 - NO3 5270 Low abundance of organic material - strong pH 7 diversity in composition within areas of several m AA 50 ppb JPL/NASA Ames/Berkeley/Leiden Jarosite UREY Field test Panoche Valley May 2004 Skelley et al. 2005 Complete sample-to-result field analysis Amino acids in jarosite Detection 50 pptr to 100ppb level First time on-site DNA analysis by PCR at MDRS March 2009 Total number of samples positive for bacterial, fungal and/or archaeal DNA Thiel et al. 2011 Life and Amino Acids in dry deserts…. Atacama: Biomass 8.5x106 – 6x107 cells/g (PLFA) 6.3x102-5.2x103 CFU/g 600 ppm TOC (Lester et al. 2007) Amino Atacama Atacama Utah Utah Utah Acid (ppb) Peru Yungai Morrison Mancos Dakota Glycine 91 102 92 1324 17390 L-Alanine 283 92 76 1114 32934 L-Glutamic 62 116 194 600 10892 Acid L-Aspartic 35 57 102 220 7775 Acid Peeters et al. 2009, Martins et al. 2011 Mars simulations How do microbes thrive in a desiccated, cold, salty, hypobaric martian environment and how do they cope with soil oxidation and ionizing radiation ? Worldwide activities: many species have been tested to survive one or several environmental conditions such as desiccation and UV radiation, low temperature etc. There are no simulations that are able to test for all parameters simultaneously ! Examples: Halobacterium salinarum NRC-1, Halorubrum chaoviator, Chroococcidiopsis sp. 029, Bacillus pumilus, Psychrobacter Cryohalolentis, homogenized bacterial permafrost community, E.coli ….. (Mancinelli et al. 2004, Cockell et al. 2005, Schuerger et al. 2006, Beaty et al. (2006), Osman et al. 2007, Peeters et al. 2009, Smith et al. 2009, Hansen et al. 2009, Berry et al. 2010)…… Low pressure growth limit Growth of Bacillus subtilis cells was progressively inhibited by lowering of pressure and ceased at 2.5 kPa (Nicholson et al. 2010) Hypobaria likely species specific; no bacteria has shown replication below 25 mbar, most resistant is Serratia liquefaciens (Schuerger et al. 2011) Active metabolism (methanogenesis) at 400 and 50 mbar of Methanothermobacter wolfeii, Methanosarcina barkeri and Methanobacterium formicicum on JSC-1 analog (Kral et al. 2011) Strong link to Planetary Protection Adaptation for enhanced growth at low pressures possible… ? Punctuated equilibrium ? (Gould 2007) Space Exposure Facilities Long Duration Exposure Facility (LDEF), ERA/EURECA, BIOPAN/FOTON, EXPOSE-E and EXPOSE-R Extended space exposure allows us to collect data on multiple samples Recent Biopan Results BIOPAN 5/6: ORGANICS: Investigations of large organic molecules, such as polycyclic aromatic hydrocarbons (PAHs): Minimal destruction (Ehrenfreund et al. 2007) UVOLUTION: Investigation of half-lives of several amino acids, urea and HCN polymers and the stability of carboxylic acids and carbonates on simulated martian surface: Results differed from ground truth (Guan et al. 2010, Stalport et al. 2010a,b) MARSTOX: Investigation of protective and/or toxic effects of Mars regolith simulant on bacterial spores in outer space or simulated Mars environment: High lethality of solar extraterrestrial UV radiation (Rettberg et al. 2004) LICHENS: Experimental test of Lithopanspermia hypothesis with lichens on natural rock habitat: High survival (Sancho et al. 2007, De la Torre et al. 2010) TARDIS: Tardigrades survive exposure to space in LEO (Jönsson et al. 2008) O/OREOS (Organism/Organics Exposure to Orbital Stresses) Dual payload: Monitor how exposure to space radiation and weightlessness changes biology and organic molecules Goal 1: Measure the survival, growth and metabolism of two different microorganisms using in-situ colorimetry Goal 2: Measure the changes induced in organic molecules and biomarkers using ultraviolet and visible spectroscopy MOMA: Mars Organic Molecule Analyzer MOMA is a joint European and US instrument that combines gas chromatography and laser desorption to an ion trap mass spectrometer. GC-MS: detection of volatile molecules (atmosphere/sediments) LDMS: detection of less volatile molecules Exomars 2018 Optical Fiber Laser Head Tapping station Electronic Box Life Marker Chip Fig 5b. Example fluorescent LMC microarray assay for benzo[a]pyrene (B[a]P); 1.6 x 1.6 mm2, 25 spot homogeneous arrays – used in development – Antibody micro-array technology varying intensity between arrays due to detection of different concentration of B[a]P Antibodies immobilized to a surface act as Exomars 2018 receptors to capture specific organics Extinct Life – preservation / diagenetic products of ancient life (geo-molecules) Extant Life – short lived products of present life (bio-molecules) Abiotic organics – examples of meteoritic in-fall, preservation / diagenetic product Fig 4b. Design early June 2011 of early Mars organics inventory Life Marker Chip Flight Model design (June 2011) List of possible LMC targets Parnell et al. 2007 Expandable smectite minerals Clay mineral group- interlayer spacing (001) expands with the absorption of water or organic molecules between the 001 layers Montmorillonite Nontronite [001] (K,Na,Ca)0.3 (Al,Mg)2 Si4 O10 (OH)2 * nH2 O Na0.3 Fe2 (Si,Al)4 O10 (OH)2 * nH2 O Monoclinic C 2/m Critical aspects and constraints for organic and life detection on Mars Ehrenfreund et al. 2011 Recommendations Search for extant life should be a targeted international effort Optimize existing mission payloads for extant life search Develop new mission concepts and instrument technology Discovery-type missions, dedicated, focused, with specific instrumenation to identify extant life (Davila et al. 2010) Create long-term program in synergy with Earth Science to exploit analogue sites in preparation for MSR.
Recommended publications
  • Phospholipid Fatty Acids As Biomass Proxies and Their Use in Characterizing Deep Terrestrial Subsurface Microbial Communities
    PHOSPHOLIPID FATTY ACIDS AS BIOMASS PROXIES AND THEIR USE IN CHARACTERIZING DEEP TERRESTRIAL SUBSURFACE MICROBIAL COMMUNITIES By SIAN E. FORD, B.Sc., B.Sc. A Thesis Submitted to the School of Graduate Studies in Partial Fulfillment of the Requirements for the Degree Master of Science McMaster University ©Copyright by Sian E. Ford, September 2018 MASTER OF SCIENCE (2018) Earth and Environmental Sciences Collaborative Graduate Program in Astrobiology McMaster University Hamilton, Ontario TITLE: PHOSPHOLIPID FATTY ACIDS AS BIOMASS PROXIES AND THEIR USE IN CHARACTERIZING DEEP TERRESTRIAL SUBSURFACE MICROBIAL COMMUNITIES AUTHOR: Sian E. Ford, B.Sc., B.Sc. (University of Alberta) SUPERVISOR: Dr. Gregory F. Slater NUMBER OF PAGES: viii, 74 ii ABSTRACT Understanding the distribution, abundances and metabolic activities of microbial life in the subsurface is fundamental to our understanding of the role microbes play in many areas of inquiry such as terrestrial biogeochemical cycling and the search for extraterrestrial life. The deep terrestrial subsurface is known to harbor microbial life at depths of up to several kilometers where, in some cases, organisms live independently from the photosphere and atmosphere. Ancient fracture fluids trapped within the crystalline basement of the Canadian Precambrian Shield have been shown to be preserved on geologic timescales (millions to billions of years). Significant challenges exist when probing the deep terrestrial subsurface including the low biomass abundance, heterogeneous distribution of biomass, and the potential for matrix effects during sampling and analysis. This Master’s thesis project has two main parts. The first study utilizes phospholipid fatty acid (PLFA) analysis to determine the extent of mineral matrices on the effectiveness of PLFA extraction and analysis from deep terrestrial subsurface samples.
    [Show full text]
  • Genome-Wide Analysis of Gene Expression in Halicephalobus Mephisto
    © COPYRIGHT by Deborah Jane Weinstein 2019 ALL RIGHTS RESERVED GENOME-WIDE ANALYSIS OF GENE EXPRESSION IN HALICEPHALOBUS MEPHISTO (THE DEVIL WORM) BY Deborah Jane Weinstein ABSTRACT The nematode Halicephalobus mephisto was discovered in an isolated aquifer, 1.3km below ground. H. mephisto thrives under extreme conditions including elevated heat (37.2°C) and minimal oxygen, classifying it as an extremophile. H. mephisto is a vital discovery for evolution and adaptation, with particular interest in its thermophilic abilities. Here we report the full transcriptome and genome of H. mephisto. In the process we identified a unique adaptation: over amplification of AIG1 and Hsp70 genes, with 168 and 142 domains respectively. Hsp70 was over-expressed under elevated heat conditions, along with ARMET and Bax inhibitor-1, suggesting these genes help H. mephisto to survive elevated heat. AIG1 was not upregulated in elevated heat suggesting its use for non-heat abiotic stressors such as hypoxia. This paper sheds light on the genomic adaptations that have evolved in H. mephisto to survive its challenging environment. ii TABLE OF CONTENTS ABSTRACT .................................................................................................................. ii LIST OF TABLES ............................................................................................................. iv LIST OF ILLUSTRATIONS .............................................................................................. v LIST OF ABBREVIATIONS ...........................................................................................
    [Show full text]
  • NSF BIO Distinguished Lecture Series
    DISTINGUISHED NSF LECTURE SERIES BIOECONOMY COORDINATING COMMITTEE 2021 BIOLOGICAL SCIENCES DIRECTORATE | BIO COSPONSORED BY THE GEOSCIENCES DIRECTORATE | GEO SPEAKERS BIOECONOMIC APPLICATIONS Dr. Tullis C. Onstott OF EXTREME EARTH Dr. Paula Welander ENVIRONMENTS Dr. Kristin O’Brien DATE TIME LOCATION June 10 11 am - 1 pm Register Dr. Andrew Thurber ABSTRACT The vast majority of microbial capabilities remains unknown, as they primarily reside in extreme habitats such as the deep subsurface. By promoting our understanding of how these microbes adapt to extreme environments, we can utilize this biodiversity to further contribute to the bioeconomy. In this presentation, Dr. Onstott will shed light regarding the innovative approaches currently being harnessed by microorganisms to bioremediate groundwater that has been contaminated by toxic metals. He will also expand upon how methods such as metagenomics and single cell genomics can be combined with metadata to help identify potential new enzymes to facilitate the growth of subsurface bacteria. Lastly, he will address how metagenomics and synthetic biology can be used to identify novel enzymes for methane uptake to address the issue of climate change. ABOUT DR. TULLIS C. ONSTOTT Dr. Tullis C. Onstott is a Professor Emeritus in the Geosciences Department at TULLIS C. Princeton University where he taught Astrobiology, Geomicrobiology, Mineralogy and ONSTOTT, PHD Petrology, Geochronology, Isotope Geochemistry and Methods in Environmental Geochemistry. Dr. Onstott earned a B.S. in Geophysics from the California Institute of Technology in 1976 and completed his PhD from Princeton University in Geology in 1980. Since 1994 his research group has focused on exploring terrestrial subsurface PROFESSOR EMERITUS microbiology and its implications for life on Mars.
    [Show full text]
  • De Novo Sequencing, Assembly and Analysis of the Genome and Transcriptome of the Nematode Panagrolaimus Superbus
    De novo sequencing, assembly and analysis of the genome and transcriptome of the nematode Panagrolaimus superbus by Georgina O'Mahony Zamora, BSc. Dissertation submitted in partial fulfillment of the requirements for candidate for the degree of Doctor of Philosophy Department of Biology, National University of Ireland Maynooth, Co. Kildare, Ireland. July, 2013 Head of Department: Prof. Paul Moynagh Supervisors: Prof. Ann Burnell and Dr. Simon Wong This thesis is dedicated to Mum and Dad For their endless love, support and encouragement Contents Page 1 Introduction 1 1.1 Nematodes . .1 1.1.1 The Panagrolaimus superbus Nematode . .4 1.1.2 Environmental Stress Tolerance in Nematodes . 11 1.1.3 Freezing Tolerance . 11 1.1.4 Anhydrobiosis and Desiccation . 12 1.2 Eukaryote Genomes . 16 1.2.1 Introduction and Overview . 16 1.2.2 Prokaryote and Eukaryote Genome Organisation . 19 1.2.3 Eukaryote Gene Structure . 22 1.2.4 Content Comparisons of Selected Model Eukaryote Genomes 24 1.2.5 Nematode Nuclear Genomes . 27 1.3 Mitochondrial Genomes of Nematodes and Other Animals . 30 1.4 Genome Sequencing . 33 1.5 Transcriptome Sequencing . 38 1.5.1 High Throughput Transcriptome Sequencing . 38 1.5.2 Transcriptome Assembly . 39 1.6 Aims and Objectives of this Project . 43 i 2 Expressed Sequence Tags 44 2.1 Introduction . 44 2.2 Methods & Materials . 46 2.2.1 Nematode Culture . 46 2.2.2 cDNA Library Construction and EST Generation . 46 2.2.3 Clustering and Sequence Analysis . 47 2.2.4 Translation and Primary Structure Analysis of Novel ESTs . 49 2.2.5 Real-time Relative qPCR Analysis of Gene Expression .
    [Show full text]
  • Parasitology JWST138-Fm JWST138-Gunn February 21, 2012 16:59 Printer Name: Yet to Come P1: OTA/XYZ P2: ABC
    JWST138-fm JWST138-Gunn February 21, 2012 16:59 Printer Name: Yet to Come P1: OTA/XYZ P2: ABC Parasitology JWST138-fm JWST138-Gunn February 21, 2012 16:59 Printer Name: Yet to Come P1: OTA/XYZ P2: ABC Parasitology An Integrated Approach Alan Gunn Liverpool John Moores University, Liverpool, UK Sarah J. Pitt University of Brighton, UK Brighton and Sussex University Hospitals NHS Trust, Brighton, UK A John Wiley & Sons, Ltd., Publication JWST138-fm JWST138-Gunn February 21, 2012 16:59 Printer Name: Yet to Come P1: OTA/XYZ P2: ABC This edition first published 2012 © 2012 by by John Wiley & Sons, Ltd Wiley-Blackwell is an imprint of John Wiley & Sons, formed by the merger of Wiley’s global Scientific, Technical and Medical business with Blackwell Publishing. Registered Office John Wiley & Sons Ltd, The Atrium, Southern Gate, Chichester, West Sussex, PO19 8SQ, UK Editorial Offices 9600 Garsington Road, Oxford, OX4 2DQ, UK The Atrium, Southern Gate, Chichester, West Sussex, PO19 8SQ, UK 111 River Street, Hoboken, NJ 07030-5774, USA For details of our global editorial offices, for customer services and for information about how to apply for permission to reuse the copyright material in this book please see our website at www.wiley.com/wiley-blackwell. The right of the author to be identified as the author of this work has been asserted in accordance with the UK Copyright, Designs and Patents Act 1988. All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted, in any form or by any means, electronic, mechanical, photocopying, recording or otherwise, except as permitted by the UK Copyright, Designs and Patents Act 1988, without the prior permission of the publisher.
    [Show full text]
  • Extreme Lebensräume: Wie Mikroben Unseren Planeten Erobern, 274 Anhang
    Anhang Es mag zwar meine eigene Herausforderung gewesen sein, ein ganzes Buch über ein Tema zu schreiben, das mich fasziniert und begeistert. Dennoch ist es nicht mög- lich, einen mit vielen wissenschaftlichen Beobachtungen, Erkenntnissen und Errungenschaften gefüllten Text ohne die direkte und indirekte Hilfe von einer ganzen Reihe von Menschen zu schreiben. Zunächst möchte ich mich bei den unzähligen Wissen- schaftlerinnen und Wissenschaftlern bedanken, die durch spektakuläre Entdeckungen, ausdauernde Arbeiten und beeindruckende Geschichten dieses Buch überhaupt erst mit Temen gefüllt haben. Voller Ehrfurcht stehe ich vor den Pionieren, die das Forschungsfeld der Extremophilen begründet und vorangebracht haben. Einige von ihnen habe ich in eigenen Kapiteln oder in kurzen Abschnitten vorgestellt, dennoch fehlen viele weitere Namen, deren © Springer-Verlag GmbH Deutschland 2018 273 S. Elleuche, Extreme Lebensräume: Wie Mikroben unseren Planeten erobern, https://doi.org/10.1007/978-3-662-56015-0 274 Anhang Arbeiten ich keinesfalls dadurch schmälern möchte, dass sie nicht erwähnt werden. Um allen großen Errungen- schaften auf dem Gebiet gerecht zu werden, reicht ein kur- zes Buch einfach nicht aus. Ich freue mich sehr darüber, dass ich ihre Arbeiten lesen und so manchem Vortrag auf zahlreichen Konferenzen lauschen durfte. Ganz besonders herzlich möchte ich mich bei mei- nen ehemaligen Kollegen Dr. Carola Schröder und Dr. Christian Schäfers bedanken, die sich durch ihre emsige Ausdauer beim fachlichen Korrekturlesen unzähli- ger Rohfassungen der einzelnen Kapitel auszeichneten. Ihren zahlreichen Verbesserungen und Anmerkungen ist es zu verdanken, dass der Text nun in einem fachlichen Gewand steckt. Auch Sylvia Wiese und Dr. Marek Wiec- zorek haben mir mit ihren konstruktiven Anmerkungen bei einigen Kapiteln sehr geholfen.
    [Show full text]
  • Worms from Hell: Nematoda from the Terrestrial Deep Subsurface of South Africa
    Worms from hell: Nematoda from the terrestrial deep subsurface of South Africa G. Borgonie1, A. García-Moyano2†, D. Litthauer2, W. Bert1,3, A. Bester2, E. van Heerden2, C. Möller2, M. Erasmus2, T.C. Onstott4 1Department of Biology, Nematology Section, Ghent University, Ghent, Belgium. 2Department of Microbial, Biochemical and Food Biotechnology, University of the Free State, Bloemfontein, South Africa. 3Laboratory of Nematology,, Department of Plant Sciences, Wageningen University, Wageningen, The Netherlands. 4Department of Geosciences, Princeton University, Princeton, NJ. †Present address: Department of Biology, University of Bergen, Bergen, Norway Since its discovery over two decades ago, the deep subsurface biosphere has been considered to be the realm of single cell organisms, extending >3 km into the Earth’s crust and comprising a significant fraction of the global biosphere1,2,3,4. The constraints of temperature, energy, O2 and space seemed to preclude the possibility of more complex multi-cellular organisms from surviving at these depths. Here we report species of the phylum Nematoda that have been detected in or recovered from 0.9-3.6 km deep fracture water encountered in the deep mines of South Africa, but have not been detected in the mining water. These subsurface nematodes, including a new species Halicephalobus mephisto, tolerate high temperature, reproduce asexually and preferentially feed upon subsurface bacteria. 14C data indicate that the fracture water in which the nematodes reside is 3-12 kyr old paleometeoric water. Our data suggest that nematodes should be found in other deep hypoxic settings where temperature permits and that they may control the microbial population density by grazing upon fracture surface biofilm patches.
    [Show full text]
  • Parasitology JWST138-Fm JWST138-Gunn February 21, 2012 16:59 Printer Name: Yet to Come P1: OTA/XYZ P2: ABC
    JWST138-fm JWST138-Gunn February 21, 2012 16:59 Printer Name: Yet to Come P1: OTA/XYZ P2: ABC Parasitology JWST138-fm JWST138-Gunn February 21, 2012 16:59 Printer Name: Yet to Come P1: OTA/XYZ P2: ABC Parasitology An Integrated Approach Alan Gunn Liverpool John Moores University, Liverpool, UK Sarah J. Pitt University of Brighton, UK Brighton and Sussex University Hospitals NHS Trust, Brighton, UK A John Wiley & Sons, Ltd., Publication JWST138-fm JWST138-Gunn February 21, 2012 16:59 Printer Name: Yet to Come P1: OTA/XYZ P2: ABC This edition first published 2012 © 2012 by by John Wiley & Sons, Ltd Wiley-Blackwell is an imprint of John Wiley & Sons, formed by the merger of Wiley’s global Scientific, Technical and Medical business with Blackwell Publishing. Registered Office John Wiley & Sons Ltd, The Atrium, Southern Gate, Chichester, West Sussex, PO19 8SQ, UK Editorial Offices 9600 Garsington Road, Oxford, OX4 2DQ, UK The Atrium, Southern Gate, Chichester, West Sussex, PO19 8SQ, UK 111 River Street, Hoboken, NJ 07030-5774, USA For details of our global editorial offices, for customer services and for information about how to apply for permission to reuse the copyright material in this book please see our website at www.wiley.com/wiley-blackwell. The right of the author to be identified as the author of this work has been asserted in accordance with the UK Copyright, Designs and Patents Act 1988. All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted, in any form or by any means, electronic, mechanical, photocopying, recording or otherwise, except as permitted by the UK Copyright, Designs and Patents Act 1988, without the prior permission of the publisher.
    [Show full text]
  • Kingsley Chow
    Exploration of the diversity of Eukaryotic, Prokaryotic and Archaea communities in deep subsurface microbial ecosystems Kingsley V. Chow; Oxana Gorbatenko; Bethany A. Reman; Cynthia Anderson Black Hill State University, South Dakota ♦ Introduction ♦ Methods & Materials ♦ Results/Discussion Exploration of microbial diversity within unique ecosystems worldwide Visual characterization: Bacterial life: Scanning Electron Microscopy (SEM): contributes greatly to our understanding of the complexity and diversity of • Regular light microscopy was used to scan small portions of the biofilm. Sample 503 life. Such exploration has revealed the presence of numerous novel • Small portions of the biofilms were preserved for scanning electron lineages of Bacteria, Archaea, and Eukaryota, many of which are microscopy (SEM) with a phosphate buffer containing 5% glutaraldehyde. Nematode under SEM (Right) 2700X uncultured; has expanded our knowledge of the limits of life; and has • The buffer was replaced by a series of ethanol washes with increasing Top Species Classificaon Results BF4850-060216-503M presence supported by NextGen Metagenomic data provided insight to physiological and biogeochemical processes. Here we concentrations until 100% has been reached. Classificaon % Total Reads that still awaits further Runella limosa 11.4 build on previous studies exploring the diversity of the deepest levels • The sample was then placed under critical point drying followed by analysis for specific genus. Methylocaldum tepidum 7.83 accessible within the Sanford
    [Show full text]
  • Biology and Evolutionary History of the Facultative Parasitic Nematode Halicephalobus Gingivalis
    BIOLOGY AND EVOLUTIONARY HISTORY OF THE FACULTATIVE PARASITIC NEMATODE HALICEPHALOBUS GINGIVALIS. A MULTIDISCIPLINARY APPROACH PAMELA FONDERIE Please refer to this work as: Fonderie P. (2013). Biology and evolutionary history of the facultative parasitic nematode Halicephalobus gingivalis. A multidisciplinary approach. PhD dissertation, Ghent University. ISBN: 978-94-6197-129-6 BIOLOGY AND EVOLUTIONARY HISTORY OF THE FACULTATIVE PARASITIC NEMATODE HALICEPHALOBUS GINGIVALIS. A MULTIDISCIPLINARY APPROACH Biologie en evolutionaire geschiedenis van de facultatief parasitaire nematode Halicephalobus gingivalis. Een multidisciplinaire benadering. PAMELA FONDERIE Promoters: Prof. dr. Wim Bert Prof. dr. Tom Moens Academic year 2012-2013 Thesis submitted in partial fulfilment of the requirements to obtain the degree of Doctor in Sciences – Biology Proefschrift voorgelegd tot het bekomen van de graad van doctor in de Wetenschappen - Biologie PROMOTERS: Prof. dr. Wim Bert (Ghent University) Prof. dr. Tom Moens (Ghent University) MEMBERS OF THE READING COMMITTEE: Prof. dr. Walter Sudhaus (Freie Universität Berlin, Germany) Prof. dr. Etiènne Geraert (Ghent University) Prof. dr. Gunther van Loon (Ghent University) MEMBERS OF THE EXAMINATION COMMITTEE: Prof. dr. Dominique Adriaens (chairman, Ghent University) Prof. dr. Wim Bert (secretary, promoter, Ghent University) Prof. dr. Tom Moens (promoter, Ghent University) Prof. dr. Walter Sudhaus (Freie Universität Berlin, Germany) Prof. dr. Etiènne Geraert (Ghent University) Prof. dr. Gunther van Loon (Ghent
    [Show full text]
  • A Abiotic, 203, 236 Abyss, 233 Abyssal, 6, 122, 124, 139, 141, 143
    Index A Activation, 38, 40, 103 Abiotic, 203, 236 Activation energy, 38 Abyss, 233 Activation mechanisms, 321 Abyssal, 6, 122, 124, 139, 141, 143, 154, 155, Activation volumes, 40, 56, 103, 104, 154 164, 195, 249, 257, 258 Active site mutant, 219 Abyssal plain, 5 Active transport, 97 Abyssocottids, 130 Activity, 137, 157 Abyssopelagic, 7 Acyl chain, 175 Acanthogammarus albus, 120 Adaptation, 157, 327–347 Acanthophyra,87 Adaptation to high pressure, 160 Accidents, 358 Adenosine triphosphate (ATP), 45, 53, 56, 60, Acclimate, 340 62, 154, 155, 249, 255, 320 Acclimated, 125, 132 Adhesion, 320 Acclimation, 122, 136, 179, 327, 337–339, 341, ADP, 60, 63, 320 345, 346 Aerobic, 213, 214 Acclimatisation, 261, 327, 337 Aerobic limit, 300 Accumulator, 378, 379, 382, 383, 385, 395, Aerobic muscle, 343 399, 402 Affinity, 41 Acetate, 15, 196 Agar, 394 Acetic acid, 18 Aggregate, 37, 319 Acetobacterium, 213 Aggregation, 38, 39, 161, 366 Acetogens, 18 Air sacs, 298 Acetylcholine, 54, 103, 106, 131, 317 Air-breathing, 295 Acholeplasma laidlawii, 210 Air-breathing animals, 89 Acidity, 283 Airway collapse, 302 Acidobacteria, 248 Airways, 301 Acoustic, 128 Alanine, 33, 154, 220, 256 Acoustic command, 385 Alcohol, 310 Acridine orange, 207 Algae, 24, 141 Actinia equina,86 Alicella, 166 Actin–myosin, 57 Alkali vents, 233, 234 Actinophrys sol,57 Alkaline, 233 Actinopterygii, 289 Alkaline vent water, 235 Actinosphaerium, 57, 161 Alkane, 286 Actins, 36, 48, 55, 57, 139, 153, 154, 156, 164, Alkyldiacylglycerols, 286, 289 319 Alloy (NIMONIC 90), 374 Action potentials, 54, 97, 98, 101, 106–108, AlMgSiI, 374 133, 134 Alpha Helix, 153 Activated state, 39 Alps, 208 # Springer Nature Switzerland AG 2021 419 A.
    [Show full text]
  • New Ecosystems in the Deep Subsurface Follow the Flow Of
    www.nature.com/scientificreports OPEN New ecosystems in the deep subsurface follow the fow of water driven by geological activity Received: 2 August 2018 G. Borgonie 1, C. Magnabosco2, A. García-Moyano 3,12, B. Linage-Alvarez4, A. O. Ojo4, Accepted: 30 January 2019 L. B. Freese5, C. Van Jaarsveld6, C. Van Rooyen4, O. Kuloyo7, E. D. Cason4, J. Vermeulen4, Published: xx xx xxxx C. Pienaar5, E. Van Heerden8, B. Sherwood Lollar9, T. C. Onstott10 & S. O. C. Mundle 11 Eukarya have been discovered in the deep subsurface at several locations in South Africa, but how organisms reach the subsurface remains unknown. We studied river-subsurface fssure water systems and identifed Eukarya from a river that are genetically identical for 18S rDNA. To further confrm that these are identical species one metazoan species recovered from the overlying river interbred successfully with specimen recovered from an underlying mine at −1.4 km. In situ seismic simulation experiments were carried out and show seismic activity to be a major force increasing the hydraulic conductivity in faults allowing organisms to create ecosystems in the deep subsurface. As seismic activity is a non-selective force we recovered specimen of algae and Insecta that defy any obvious other explanation at a depth of −3.4 km. Our results show there is a steady fow of surface organisms to the deep subsurface where some survive and adapt and others perish. As seismic activity is also present on other planets and moons in our solar system the mechanism elucidated here may be relevant for future search and selection of landing sites in planetary exploration.
    [Show full text]