Hormonal Regulation of Oligodendrogenesis I: Effects Across the Lifespan
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A 3' UTR SNP Rs885863, a Cis-Eqtl for the Circadian Gene VIPR2 and Lincrna 689, Is Associated with Opioid Addiction
RESEARCH ARTICLE A 3' UTR SNP rs885863, a cis-eQTL for the circadian gene VIPR2 and lincRNA 689, is associated with opioid addiction 1 1 2 3 4 Orna LevranID *, Matthew Randesi , John Rotrosen , Jurg Ott , Miriam Adelson , Mary Jeanne Kreek1 1 The Laboratory of the Biology of Addictive Diseases, The Rockefeller University, New York, New York, United States of America, 2 NYU School of Medicine, New York, New York, United States of America, 3 The Laboratory of Statistical Genetics, The Rockefeller University, New York, New York, United States of a1111111111 America, 4 Dr. Miriam and Sheldon G. Adelson Clinic for Drug Abuse Treatment and Research, Las Vegas, a1111111111 Nevada, United States of America a1111111111 a1111111111 * [email protected] a1111111111 Abstract There is a reciprocal relationship between the circadian and the reward systems. Polymor- OPEN ACCESS phisms in several circadian rhythm-related (clock) genes were associated with drug addic- Citation: Levran O, Randesi M, Rotrosen J, Ott J, tion. This study aims to search for associations between 895 variants in 39 circadian Adelson M, Kreek MJ (2019) A 3' UTR SNP rhythm-related genes and opioid addiction (OUD). Genotyping was performed with the rs885863, a cis-eQTL for the circadian gene VIPR2 ® and lincRNA 689, is associated with opioid Smokescreen array. Ancestry was verified by principal/MDS component analysis and the addiction. PLoS ONE 14(11): e0224399. https:// sample was limited to European Americans (EA) (OUD; n = 435, controls; n = 138). Nomi- doi.org/10.1371/journal.pone.0224399 nally significant associations (p < 0.01) were detected for several variants in genes encoding Editor: Huiping Zhang, Boston University, UNITED vasoactive intestinal peptide receptor 2 (VIPR2), period circadian regulator 2 (PER2), STATES casein kinase 1 epsilon (CSNK1E), and activator of transcription and developmental regula- Received: August 22, 2019 tor (AUTS2), but no signal survived correction for multiple testing. -
The Role of the Mtor Pathway in Developmental Reprogramming Of
THE ROLE OF THE MTOR PATHWAY IN DEVELOPMENTAL REPROGRAMMING OF HEPATIC LIPID METABOLISM AND THE HEPATIC TRANSCRIPTOME AFTER EXPOSURE TO 2,2',4,4'- TETRABROMODIPHENYL ETHER (BDE-47) An Honors Thesis Presented By JOSEPH PAUL MCGAUNN Approved as to style and content by: ________________________________________________________** Alexander Suvorov 05/18/20 10:40 ** Chair ________________________________________________________** Laura V Danai 05/18/20 10:51 ** Committee Member ________________________________________________________** Scott C Garman 05/18/20 10:57 ** Honors Program Director ABSTRACT An emerging hypothesis links the epidemic of metabolic diseases, such as non-alcoholic fatty liver disease (NAFLD) and diabetes with chemical exposures during development. Evidence from our lab and others suggests that developmental exposure to environmentally prevalent flame-retardant BDE47 may permanently reprogram hepatic lipid metabolism, resulting in an NAFLD-like phenotype. Additionally, we have demonstrated that BDE-47 alters the activity of both mTOR complexes (mTORC1 and 2) in hepatocytes. The mTOR pathway integrates environmental information from different signaling pathways, and regulates key cellular functions such as lipid metabolism, innate immunity, and ribosome biogenesis. Thus, we hypothesized that the developmental effects of BDE-47 on liver lipid metabolism are mTOR-dependent. To assess this, we generated mice with liver-specific deletions of mTORC1 or mTORC2 and exposed these mice and their respective controls perinatally to -
Melatonin-The Hormone of Darkness - O
PHYSIOLOGY AND MAINTENANCE – Vol. III - Melatonin-The Hormone of Darkness - O. Vakkuri MELATONIN―THE HORMONE OF DARKNESS O. Vakkuri Department of Physiology, University of Oulu, Finland. Keywords: Pineal gland, retina, suprachiasmatic nuclei, circadian and circannual rhythms. Contents 1. Introduction 2. Melatonin as Pineal Hormone of Darkness 3. Melatonin in Other Tissues 4. Circadian Secretion Pattern of Melatonin 5. Seasonal Secretion of Melatonin 6. Metabolism of Melatonin 7. Melatonin Receptors 8. Biological Action Profile of Melatonin 8.1. Melatonin and Sleep 8.2. Melatonin as Antioxidant and Cancer 8.3. Melatonin, Mental Health and Aging 9. Future Perspectives 10. Conclusions Glossary Bibliography Biographical Sketch Summary Melatonin, the pineal hormone of darkness, was originally found and chemically characterized to N-acetyl-5-methoxytryptamine in bovine pineal extracts in the late 1950s. Since then melatonin has been studied more and more intensively and not only in humans and several animal species but lately also in plants. After its first-described biological effect, i.e. skin-lightening effect in lower vertebrates, melatonin was shortly known as a rhythm marker due to its circadian biosynthesis and secretion pattern in the pineal gland: melatonin is synthesized and secreted during the night, i.e. the dark period of the day.UNESCO This circadian rhythm is endoge – nouslyEOLSS regulated by the biological clock in the suprachiasmatic nuclei of the hypothalamus. Environmental light has a clear inhibiting effectSAMPLE on melatonin biosynthesis, CHAPTERS continuously entraining the melatonin rhythm so that endogenous and exogenous rhythms are maintained in the same phase. The entraining light information is transmitting via the eyes and the retinohypothalamic tract to the suprachiasmatic nuclei and then via the paraventricular nuclei to superior cervical ganglia from which along the sympathetic tract finally to the pineal gland. -
The GATA2 Transcription Factor Negatively Regulates the Proliferation of Neuronal Progenitors
RESEARCH ARTICLE 2155 Development 133, 2155-2165 (2006) doi:10.1242/dev.02377 The GATA2 transcription factor negatively regulates the proliferation of neuronal progenitors Abeer El Wakil*, Cédric Francius*,†, Annie Wolff, Jocelyne Pleau-Varet† and Jeannette Nardelli†,§ Postmitotic neurons are produced from a pool of cycling progenitors in an orderly fashion that requires proper spatial and temporal coordination of proliferation, fate determination, differentiation and morphogenesis. This probably relies on complex interplay between mechanisms that control cell cycle, specification and differentiation. In this respect, we have studied the possible implication of GATA2, a transcription factor that is involved in several neuronal specification pathways, in the control of the proliferation of neural progenitors in the embryonic spinal cord. Using gain- and loss-of-function manipulations, we have shown that Gata2 can drive neural progenitors out of the cycle and, to some extent, into differentiation. This correlates with the control of cyclin D1 transcription and of the expression of the p27/Kip1 protein. Interestingly, this functional aspect is not only associated with silencing of the Notch pathway but also appears to be independent of proneural function. Consistently, GATA2 also controls the proliferation capacity of mouse embryonic neuroepithelial cells in culture. Indeed, Gata2 inactivation enhances the proliferation rate in these cells. By contrast, GATA2 overexpression is sufficient to force such cells and neuroblastoma cells to stop dividing but not to drive either type of cell into differentiation. Furthermore, a non-cell autonomous effect of Gata2 expression was observed in vivo as well as in vitro. Hence, our data have provided evidence for the ability of Gata2 to inhibit the proliferation of neural progenitors, and they further suggest that, in this regard, Gata2 can operate independently of neuronal differentiation. -
Olig1 and Sox10 Interact Synergistically to Drivemyelin Basic
The Journal of Neuroscience, December 26, 2007 • 27(52):14375–14382 • 14375 Cellular/Molecular Olig1 and Sox10 Interact Synergistically to Drive Myelin Basic Protein Transcription in Oligodendrocytes Huiliang Li,1 Yan Lu,2 Hazel K. Smith,1 and William D. Richardson1 1Wolfson Institute for Biomedical Research and Department of Biology, University College London, London WC1E 6BT, United Kingdom, and 2Medical Research Council, Clinical Sciences Centre, Imperial College London, London W12 0NN, United Kingdom The oligodendrocyte lineage genes (Olig1/2), encoding basic helix-loop-helix transcription factors, were first identified in screens for master regulators of oligodendrocyte development. OLIG1 is important for differentiation of oligodendrocyte precursors into myelin- forming oligodendrocytes during development and is thought to play a crucial role in remyelination during multiple sclerosis. However, itisstillunclearhowOLIG1interactswithitstranscriptionalcofactorsandDNAtargets.OLIG1wasreportedlyrestrictedtomammals,but we demonstrate here that zebrafish and other teleosts also possess an OLIG1 homolog. In zebrafish, as in mammals, Olig1 is expressed in the oligodendrocyte lineage. Olig1 associates physically with another myelin-associated transcription factor, Sox10, and the Olig1/Sox10 complex activates mbp (myelin basic protein) transcription via conserved DNA sequence motifs in the mbp promoter region. In contrast, Olig2 does not bind to Sox10 in zebrafish, although both OLIG1 and OLIG2 bind SOX10 in mouse. Key words: Olig1; Olig2; Sox10; Mbp; oligodendrocyte; myelin; zebrafish; mouse; evolution; development Introduction directly regulates Mbp transcription (Stolt et al., 2002), and over- Myelin, the multilayered glial sheath around axons, is one of the expression of SOX10 alone is sufficient to induce myelin gene defining features of jawed vertebrates (gnathostomes). It is expression in embryonic chick spinal cord (Liu et al., 2007). -
Genome-Wide DNA Methylation Analysis of KRAS Mutant Cell Lines Ben Yi Tew1,5, Joel K
www.nature.com/scientificreports OPEN Genome-wide DNA methylation analysis of KRAS mutant cell lines Ben Yi Tew1,5, Joel K. Durand2,5, Kirsten L. Bryant2, Tikvah K. Hayes2, Sen Peng3, Nhan L. Tran4, Gerald C. Gooden1, David N. Buckley1, Channing J. Der2, Albert S. Baldwin2 ✉ & Bodour Salhia1 ✉ Oncogenic RAS mutations are associated with DNA methylation changes that alter gene expression to drive cancer. Recent studies suggest that DNA methylation changes may be stochastic in nature, while other groups propose distinct signaling pathways responsible for aberrant methylation. Better understanding of DNA methylation events associated with oncogenic KRAS expression could enhance therapeutic approaches. Here we analyzed the basal CpG methylation of 11 KRAS-mutant and dependent pancreatic cancer cell lines and observed strikingly similar methylation patterns. KRAS knockdown resulted in unique methylation changes with limited overlap between each cell line. In KRAS-mutant Pa16C pancreatic cancer cells, while KRAS knockdown resulted in over 8,000 diferentially methylated (DM) CpGs, treatment with the ERK1/2-selective inhibitor SCH772984 showed less than 40 DM CpGs, suggesting that ERK is not a broadly active driver of KRAS-associated DNA methylation. KRAS G12V overexpression in an isogenic lung model reveals >50,600 DM CpGs compared to non-transformed controls. In lung and pancreatic cells, gene ontology analyses of DM promoters show an enrichment for genes involved in diferentiation and development. Taken all together, KRAS-mediated DNA methylation are stochastic and independent of canonical downstream efector signaling. These epigenetically altered genes associated with KRAS expression could represent potential therapeutic targets in KRAS-driven cancer. Activating KRAS mutations can be found in nearly 25 percent of all cancers1. -
SUPPLEMENTARY MATERIAL Bone Morphogenetic Protein 4 Promotes
www.intjdevbiol.com doi: 10.1387/ijdb.160040mk SUPPLEMENTARY MATERIAL corresponding to: Bone morphogenetic protein 4 promotes craniofacial neural crest induction from human pluripotent stem cells SUMIYO MIMURA, MIKA SUGA, KAORI OKADA, MASAKI KINEHARA, HIROKI NIKAWA and MIHO K. FURUE* *Address correspondence to: Miho Kusuda Furue. Laboratory of Stem Cell Cultures, National Institutes of Biomedical Innovation, Health and Nutrition, 7-6-8, Saito-Asagi, Ibaraki, Osaka 567-0085, Japan. Tel: 81-72-641-9819. Fax: 81-72-641-9812. E-mail: [email protected] Full text for this paper is available at: http://dx.doi.org/10.1387/ijdb.160040mk TABLE S1 PRIMER LIST FOR QRT-PCR Gene forward reverse AP2α AATTTCTCAACCGACAACATT ATCTGTTTTGTAGCCAGGAGC CDX2 CTGGAGCTGGAGAAGGAGTTTC ATTTTAACCTGCCTCTCAGAGAGC DLX1 AGTTTGCAGTTGCAGGCTTT CCCTGCTTCATCAGCTTCTT FOXD3 CAGCGGTTCGGCGGGAGG TGAGTGAGAGGTTGTGGCGGATG GAPDH CAAAGTTGTCATGGATGACC CCATGGAGAAGGCTGGGG MSX1 GGATCAGACTTCGGAGAGTGAACT GCCTTCCCTTTAACCCTCACA NANOG TGAACCTCAGCTACAAACAG TGGTGGTAGGAAGAGTAAAG OCT4 GACAGGGGGAGGGGAGGAGCTAGG CTTCCCTCCAACCAGTTGCCCCAAA PAX3 TTGCAATGGCCTCTCAC AGGGGAGAGCGCGTAATC PAX6 GTCCATCTTTGCTTGGGAAA TAGCCAGGTTGCGAAGAACT p75 TCATCCCTGTCTATTGCTCCA TGTTCTGCTTGCAGCTGTTC SOX9 AATGGAGCAGCGAAATCAAC CAGAGAGATTTAGCACACTGATC SOX10 GACCAGTACCCGCACCTG CGCTTGTCACTTTCGTTCAG Suppl. Fig. S1. Comparison of the gene expression profiles of the ES cells and the cells induced by NC and NC-B condition. Scatter plots compares the normalized expression of every gene on the array (refer to Table S3). The central line -
SUPPLEMENTAL FIGURE LEGENDS Supplemental Figure S1. RBPJ
Xie et al. SUPPLEMENTAL FIGURE LEGENDS Supplemental Figure S1. RBPJ correlates with BTIC marker expression. A-D. The TCGA GBM dataset was downloaded and correlations analyzed by R. RBPJ mRNA levels were highly correlated with (A) Olig2, (B) Sox2, (C) CD133, and (D) Sox4 levels. E. RBPJ is preferentially expressed in proneural glioblastomas. The glioblastoma TCGA dataset was interrogated for RBPJ mRNA expression segregated by transcriptional profile. The proneural tumors were further divided into G-CIMP (glioma CpG-island methylator phenotype) or non-G-CIMP. **, p < 0.01. ****, p < 0.0001. *****, p < 0.00001. Supplemental Figure S2. Targeting RBPJ induces BTIC apoptosis. A. 3691 BTICs were transduced with shCONT, shRBPJ-1, or shRBPJ-2. Lysates were prepared and immunoblotted with the indicated antibodies. shRNA-mediated knockdown of RBPJ was associated with increased cleaved (activated) PARP. B. 3691 BTICs were transduced with shCONT, shRBPJ-1, or shRBPJ-2. Apoptosis measured by Annexin V staining. Data are presented as mean ± SEM (two- way ANOVA; **, p < 0.01; n = 3). Supplemental Figure S3. Targeting RBPJ does not affect non-BTIC proliferation. Non-BTICs (Top, 3691; Bottom, 4121) were transduced with shCONT, shRBPJ-1, or shRBPJ-2. Cell proliferation was measured by CellTiter-Glo. 42 Xie et al. Supplemental Figure S4. RBPJ induces transcriptional profiles in BTICs distinct from Notch activation. A. In parallel experiments, 3691 BTICs were either treated with DAPT (at either 5 μM or 10 μM) vs. vehicle control (DMSO) or transduced with shRBPJ vs. shCONT. RNA-Seq was performed and the results displayed as a heat map with normalization to the relevant control. -
The Role of Melatonin in Diabetes: Therapeutic Implications
review The role of melatonin in diabetes: therapeutic implications Shweta Sharma1, Hemant Singh1, Nabeel Ahmad2, Priyanka Mishra1, Archana Tiwari1 ABSTRACT Melatonin referred as the hormone of darkness is mainly secreted by pineal gland, its levels being 1 School of Biotechnology, Rajiv elevated during night and low during the day. The effects of melatonin on insulin secretion are me- Gandhi Technical University, Gandhi diated through the melatonin receptors (MT1 and MT2). It decreases insulin secretion by inhibiting Nagar, Bhopal, Madhya Pradesh cAMP and cGMP pathways but activates the phospholipaseC/IP3 pathway, which mobilizes Ca2+ from 2 School of Biotechnology, organelles and, consequently increases insulin secretion. Both in vivo and in vitro, insulin secretion IFTM University, Lodhipur Rajput, Uttar Pradesh by the pancreatic islets in a circadian manner, is due to the melatonin action on the melatonin recep- tors inducing a phase shift in the cells. Melatonin may be involved in the genesis of diabetes as a Correspondence to: reduction in melatonin levels and a functional interrelationship between melatonin and insulin was Shweta Sharma School of Biotechnology observed in diabetic patients. Evidences from experimental studies proved that melatonin induces Rajiv Gandhi Technical University production of insulin growth factor and promotes insulin receptor tyrosine phosphorylation. The dis- Airport Bypass Road, Gandhi Nagar turbance of internal circadian system induces glucose intolerance and insulin resistance, which could 462036 – Bhopal, Madhya Pradesh [email protected] be restored by melatonin supplementation. Therefore, the presence of melatonin receptors on hu- man pancreatic islets may have an impact on pharmacotherapy of type 2 diabetes. Arch Endocrinol Metab. Received on June/8/2015 2015;59(5):391-9 Accepted on July/6/2015 DOI: 10.1590/2359-3997000000098 Keywords Melatonin; diabetes; insulin; beta cells; calcium; circadian rhythm INTRODUCTION tomy of rodents causes hyperinsulinemia (7). -
Supplemental Data Olig2-Regulated Lineage-Restricted Pathway Controls Replication Competence in Neural Stem Cells and Malignant
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Caltech Authors Neuron, Volume 53 Supplemental Data Olig2-Regulated Lineage-Restricted Pathway Controls Replication Competence in Neural Stem Cells and Malignant Glioma Keith L. Ligon, Emmanuelle Huillard, Shwetal Mehta, Santosh Kesari, Hongye Liu, John A. Alberta, Robert M. Bachoo, Michael Kane, David N. Louis, Ronald A. DePinho, David J. Anderson, Charles D. Stiles, and David H. Rowitch Figure S1. Olig1/2+/- Ink4a/Arf-/-EGFRvIII Gliomas Express Characteristic Morphologic and Immunophenotypic Features of Human Malignant Gliomas (A) Tumors exhibit dense cellularity and atypia. (B) Characteristic infiltration of host SVZ stem cell niche. (C) Although occasional tumors exhibited pseudopalisading necrosis (n, arrowhead) and hemorrhage (h, arrowhead) similar to human GBM (Astrocytoma WHO Grade IV), most tumors lacked these features. (D) IHC for hEGFR highlights hallmark feature of human gliomas, including perivascular (pv) and subpial (sp) accumulation of tumor cells, (E) striking white matter tropism of tumor cells in corpus callosum (cc), and (F) distant single cell infiltration of cerebellar white matter (wm, arrows). (G-J) Immunohistochemical markers characteristic of human tumors (Gfap, Olig2, Olig1, Nestin) are present. (K and L) Weak staining for the early neuronal marker TuJ1 and absence of the differentiated neuronal marker, NeuN similar to human glioma and consistent with heterogeneous lines of partial differentiation. Figure S2. Olig1/2+/- Ink4a/Arf-/-EGFRvIII Neurospheres Are Multipotent and Olig1/2-/- Ink4a/Arf-/-EGFRvIII Neurospheres Are Bipotent Olig1/2+/- or Olig1/2-/- Ink4a/Arf-/-EGFRvIII neurospheres were allowed to differentiate for 6 days in medium without EGF. -
Transcription Factors Define the Neuroanatomical Organization Of
ORIGINAL RESEARCH ARTICLE published: 14 May 2013 NEUROANATOMY doi: 10.3389/fnana.2013.00007 Transcription factors define the neuroanatomical organization of the medullary reticular formation Paul A. Gray * Department of Anatomy and Neurobiology, Washington University School of Medicine, St. Louis, MO, USA Edited by: The medullary reticular formation contains large populations of inadequately described, Kathleen S. Rockland, MIT, USA excitatory interneurons that have been implicated in multiple homeostatic behaviors Reviewed by: including breathing, viserosensory processing, vascular tone, and pain. Many hindbrain Joan S. Baizer, University of Buffalo, nuclei show a highly stereotyped pattern of localization across vertebrates suggesting USA Ruth Stornetta, University of a strong underlying genetic organization. Whether this is true for neurons within Virginia, USA the reticular regions of hindbrain is unknown. Hindbrain neurons are derived from *Correspondence: distinct developmental progenitor domains each of which expresses distinct patterns of Paul A. Gray, Department of transcription factors (TFs). These neuronal populations have distinct characteristics such Anatomy and Neurobiology, as transmitter identity, migration, and connectivity suggesting developmentally expressed Washington University School of Medicine, Box 8108, 660 S. Euclid TFs might identify unique subpopulations of neurons within the reticular formation. A Ave., St. Louis, MO 63110, USA. fate-mapping strategy using perinatal expression of reporter genes within Atoh1, Dbx1, e-mail: [email protected] Lmx1b,andPtf1a transgenic mice coupled with immunohistochemistry (IHC) and in situ hybridization (ISH) were used to address the developmental organization of a large subset of reticular formation glutamatergic neurons. All hindbrain lineages have relatively large populations that extend the entire length of the hindbrain. Importantly, the location of neurons within each lineage was highly constrained. -
Supporting Information
Supporting Information Supporting Figures Fig. S1. Influence of the number of ligand samples on the model performance. (A) The improvement in r2 of the model based on the top-300 features selected from 1,024 bits against the baseline model. (B) The improvement in r2 of the optimal model (highlighted in boldface in Table 1) against the model based on the top-300 features selected from 1024 bits. Group I: GPCR datasets with more than 600 ligands, i.e., P08908, Q9Y5N1, P28335, P35372, Q99705, P0DMS8, Q16602, P51677, P48039; Group II: GPCR datasets with fewer than 600 ligands, i.e., Q9H228, Q8TDU6, Q8TDS4, Q9HC97, P41180, Q14833, Q99835. Supporting Tables Table S1. Description of datasets used in this study UniProt Gene # of # of Protein Name Class Subfamily Clinical Significance ID Name Ligands Controls 5-hydroxytryptamine Blood pressure, heart rate, antidepressant, anxiolytic, P08908 HTR1A A Aminergic receptors 4322 850 receptor 1A schizophrenia and Parkinson (H Ito, 1999) Q9Y5N1 HRH3 Histamine H3 receptor A Aminergic receptors 3644 700 Cognitive disorders (Esbenshade, et al., 2008) 5-hydroxytryptamine mood, anxiety, feeding, and reproductive P28335 HTR2C A Aminergic receptors 3286 650 receptor 2C behavior(Heisler, et al., 2007) Morphine-induced analgesia and itching (Liu, et al., P35372 OPRM1 Mu-type opioid receptor A Peptide receptors 4591 900 2011) Melanin-concentrating Appetite, anxiety and depression (Rivera, et al., Q99705 MCHR1 A Peptide receptors 3663 700 hormone receptors 1 2008) Bronchial asthma(Jacobson, et al., 2008)and P0DMS8