Recent Advances in C-S Bond Formation Via C-H Functionalization and Decarboxylation
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Six New Induced Sesquiterpenes from the Cultures of Ascomycete Daldinia Concentrica Xiang-Dong Qin, Hong-Jun Shao, Ze-Jun Dong, Ji-Kai Liu
J. Antibiot. 61(9): 556–562, 2008 THE JOURNAL OF ORIGINAL ARTICLE ANTIBIOTICS Six New Induced Sesquiterpenes from the Cultures of Ascomycete Daldinia concentrica Xiang-Dong Qin, Hong-Jun Shao, Ze-Jun Dong, Ji-Kai Liu Received: April 23, 2008 / Accepted: August 19, 2008 © Japan Antibiotics Research Association Abstract Six new sesquiterpenes having the botryane production titers of desired compounds. This approach was carbon skeleton (1ϳ6), together with known compounds successfully used as a valuable tool to exploit natural (7ϳ10) were induced and isolated from the ascomycete products diversity in the past, for example, actinomycetes Daldinia concentrica (strain S 0318). Structures (Streptomyces sp.) and fungi (Aspergillus sp., elucidation was accomplished by NMR spectroscopic and Sphaeropsidales sp.) produce additional compounds after X-ray crystallographic studies. variation of the culture conditions [3ϳ5]. Previous investigation reported the isolation of induced Keywords Sesquiterpenes, Daldinia concentrica, daldinins A, B, and C with a new skeleton and four known ascomycete, induction, botryane compounds from the cultures of ascomycete Daldinia concentrica [6]. Following the OSMAC approach, the strain S 0318 (Daldinia concentrica) has been cultivated Introduction and further investigated. In the culture broth extract from Erlenmeyer flasks (color, transparent; size, 500 ml; media, Fungi or bacteria that produce secondary metabolites often 300 ml) instead of reagent bottles under same cultivation have the potential to produce various compounds from a conditions we detected additional metabolites by TLC and single strain. Variation of cultivation parameters to induce HPLC. Careful investigation on the culture of D. the production of formerly unknown compounds is one of concentrica strain (S 0318) led to the isolation of new the approach to increase the number of secondary compounds methyl-7a-acetoxydeacetylbotryoloate (1), 7a- metabolites from one single organism. -
Studies on the Chemistry of Paclitaxel
STUDIES ON THE CHEMISTRY OF PACLITAXEL Haiqing Yuan Dissertation submitted to the Faculty of the Virginia Polytechnic Institute and State University in the partial fulfillment of the requirement for the degree of Doctor of Philosophy in Chemistry Dr. David G. I. Kingston, Chair Dr. Michael Calter Dr. Neal Castagnoli, Jr. Dr. Richard Gandour Dr. Larry Taylor August 11, 1998 Blacksburg, Virginia Keywords: Paclitaxel, Taxol®, synthesis, analog, SAR Copyright 1998, Haiqing Yuan STUDIES ON THE CHEMISTRY OF PACLITAXEL HAIQING YUAN (ABSTRACT) Paclitaxel is a natural occurring diterpene alkaloid originally isolated from the bark of Taxus brevifolia. It is now one of the most important chemotherapeutic agents for clinical treatment of ovarian and breast cancers. Recent clinical trials have also shown paclitaxel’s potential for the treatment of non-small-cell lung cancer, head and neck cancer, and other types of cancers. While tremendous chemical research efforts have been made in the past years, which established the fundamental structure-activity relationships of the paclitaxel molecule, and provided analogs for biochemical studies to elucidate the precise mechanism of action and for the development of second-generation agents, many areas remain to be explored. In continuation of our efforts in the structure-activity relationships study of A- norpaclitaxel, five new analogs modified at the C-1 substituent and analogs with expanded B-ring or contracted C-ring have now been prepared. Preliminary biological studies indicated that the volume rather than functionality at the C-1 position plays a role in determining the anticancer activity by controlling the relative position of the tetracyclic ring system, which in turn controls the positions of the most critical functionalities such as the C-2 benzoyl, the C-4 acetate, and the C-13 side chain. -
Acetoxy Drug: Protein Transacetylase: a Novel Enzyme-Mediating Protein Acetylation by Polyphenolic Peracetates*
Pure Appl. Chem., Vol. 77, No. 1, pp. 245–250, 2005. DOI: 10.1351/pac200577010245 © 2005 IUPAC Acetoxy drug: protein transacetylase: A novel enzyme-mediating protein acetylation by polyphenolic peracetates* Hanumantharao G. Raj1,‡, Brajendra K. Singh2, Ekta Kohli1, B. S. Dwarkanath3, Subhash C. Jain2, Ramesh C. Rastogi2, Ajit Kumar1, J. S. Adhikari3, Arthur C. Watterson4, Carl E. Olsen5, and Virinder S. Parmar2 1Biochemistry Department, V. P. Chest Institute, University of Delhi, Delhi 110 007, India; 2Bioorganic Laboratory, Department of Chemistry, University of Delhi, Delhi 110 007, India; 3Institute of Nuclear Medicine and Allied Sciences, Lucknow Road, Delhi 110 054, India; 4INSET, Department of Chemistry, University of Massachusetts, Lowell, MA 01854, USA; 5Department of Chemistry, Royal Veterinary and Agricultural University, DK-1871 Frederiksburg C, Copenhagen, Denmark Abstract: The acetylation of proteins in biological systems is largely catalyzed by specific acetyl transferases utilizing acetyl CoA as the acetyl donor. The enzymatic acetylation of pro- teins independent of acetyl CoA was unknown until we discovered a unique membrane- bound enzyme in mammalian cells catalyzing the transfer of acetyl groups from polypheno- lic peracetates (PAs) to certain enzyme proteins, resulting in the modulation of their catalytic activities. Since for the enzyme, acetyl derivatives of several classes of polyphenols such as coumarins, flavones, chromones, and xanthones were found to be acetyl donors, the enzyme was termed as acetoxy drug: protein transacetylase (TAase). TAase was found to be ubiqui- tously present in tissues of several animal species and a variety of animal cells. Liver micro- somal cytochrome P-450 (CYP), NADPH-cytochrome c reductase and cytosolic glutathione S-transferase (GST) were found to be the targets for TAase-catalyzed acetylation by the model acetoxy drug 7,8-diacetoxy-4-methylcoumarin (DAMC). -
Predicting Glycosylation Stereoselectivity Using Machine Learning† Cite This: Chem
Chemical Science View Article Online EDGE ARTICLE View Journal | View Issue Predicting glycosylation stereoselectivity using machine learning† Cite this: Chem. Sci.,2021,12,2931 ab a ab All publication charges for this article Sooyeon Moon, ‡ Sourav Chatterjee, ‡ Peter H. Seeberger have been paid for by the Royal Society and Kerry Gilmore §*a of Chemistry Predicting the stereochemical outcome of chemical reactions is challenging in mechanistically ambiguous transformations. The stereoselectivity of glycosylation reactions is influenced by at least eleven factors across four chemical participants and temperature. A random forest algorithm was trained using a highly reproducible, concise dataset to accurately predict the stereoselective outcome of glycosylations. The steric and electronic contributions of all chemical reagents and solvents were quantified by quantum mechanical calculations. The trained model accurately predicts stereoselectivities for unseen nucleophiles, electrophiles, acid catalyst, and solvents across a wide temperature range (overall root mean square error 6.8%). All predictions were validated experimentally on a standardized microreactor platform. The model helped to identify novel ways to control glycosylation stereoselectivity and Creative Commons Attribution 3.0 Unported Licence. Received 11th November 2020 accurately predicts previously unknown means of stereocontrol. By quantifying the degree of influence Accepted 24th December 2020 of each variable, we begin to gain a better general understanding of the transformation, for example that DOI: 10.1039/d0sc06222g environmental factors influence the stereoselectivity of glycosylations more than the coupling partners in rsc.li/chemical-science this area of chemical space. Introduction retrosynthesis,9 reaction performance10 and products,11,12 the identication of new materials and catalysts,13–15 as well as Predicting the outcome of an organic reaction generally enantioselectivity16,17 have been addressed. -
Aldol Reactions: E-Enolates and Anti-Selectivity
Utah State University DigitalCommons@USU All Graduate Plan B and other Reports Graduate Studies 5-2005 Aldol Reactions: E-Enolates and Anti-Selectivity Matthew Grant Anderson Utah State University Follow this and additional works at: https://digitalcommons.usu.edu/gradreports Part of the Organic Chemistry Commons Recommended Citation Anderson, Matthew Grant, "Aldol Reactions: E-Enolates and Anti-Selectivity" (2005). All Graduate Plan B and other Reports. 1312. https://digitalcommons.usu.edu/gradreports/1312 This Report is brought to you for free and open access by the Graduate Studies at DigitalCommons@USU. It has been accepted for inclusion in All Graduate Plan B and other Reports by an authorized administrator of DigitalCommons@USU. For more information, please contact [email protected]. ALDOL REACTIONS: E-ENOLATES AND ANTI-SELECTIVITY Prepared By: MATTHEW GRANT ANDERSON A non-thesis paper submitted in partial fulfillment of the requirement for a Plan B Degree of Masters of Science in Organic Chemistry UTAH STATE UNIVERSITY Logan, Utah 2005 Contents Page CONTENTS ...................................................................................... .i LIST OF TABLES, FIGURES AND SCHEMES ....................................... ii,iii ABSTRACT .................................................................................... iv CHAPTER I. ALDOL REACTIONS:E-ENOLATES AND ANTI SELECTIVITY ......... 1 CHAPTER II. SECTION 1. MODELS OF E-ENOLATE FORMATION ...... .... ....... ... 12 SECTION 2. PATERSON ENOLATE PAPER ..... ......................... -
Stereoselectivity in Atmospheric Autoxidation Kristian H
Subscriber access provided by Caltech Library Clusters, Radicals, and Ions; Environmental Chemistry Stereoselectivity in Atmospheric Autoxidation Kristian H. Møller, Eric Joseph Praske, Lu Xu, John D. Crounse, Paul O. Wennberg, and Henrik Grum Kjaergaard J. Phys. Chem. Lett., Just Accepted Manuscript • DOI: 10.1021/acs.jpclett.9b01972 • Publication Date (Web): 23 Sep 2019 Downloaded from pubs.acs.org on September 24, 2019 Just Accepted “Just Accepted” manuscripts have been peer-reviewed and accepted for publication. They are posted online prior to technical editing, formatting for publication and author proofing. The American Chemical Society provides “Just Accepted” as a service to the research community to expedite the dissemination of scientific material as soon as possible after acceptance. “Just Accepted” manuscripts appear in full in PDF format accompanied by an HTML abstract. “Just Accepted” manuscripts have been fully peer reviewed, but should not be considered the official version of record. They are citable by the Digital Object Identifier (DOI®). “Just Accepted” is an optional service offered to authors. Therefore, the “Just Accepted” Web site may not include all articles that will be published in the journal. After a manuscript is technically edited and formatted, it will be removed from the “Just Accepted” Web site and published as an ASAP article. Note that technical editing may introduce minor changes to the manuscript text and/or graphics which could affect content, and all legal disclaimers and ethical guidelines that apply to the journal pertain. ACS cannot be held responsible for errors or consequences arising from the use of information contained in these “Just Accepted” manuscripts. -
Reactions of Alkenes and Alkynes
05 Reactions of Alkenes and Alkynes Polyethylene is the most widely used plastic, making up items such as packing foam, plastic bottles, and plastic utensils (top: © Jon Larson/iStockphoto; middle: GNL Media/Digital Vision/Getty Images, Inc.; bottom: © Lakhesis/iStockphoto). Inset: A model of ethylene. KEY QUESTIONS 5.1 What Are the Characteristic Reactions of Alkenes? 5.8 How Can Alkynes Be Reduced to Alkenes and 5.2 What Is a Reaction Mechanism? Alkanes? 5.3 What Are the Mechanisms of Electrophilic Additions HOW TO to Alkenes? 5.1 How to Draw Mechanisms 5.4 What Are Carbocation Rearrangements? 5.5 What Is Hydroboration–Oxidation of an Alkene? CHEMICAL CONNECTIONS 5.6 How Can an Alkene Be Reduced to an Alkane? 5A Catalytic Cracking and the Importance of Alkenes 5.7 How Can an Acetylide Anion Be Used to Create a New Carbon–Carbon Bond? IN THIS CHAPTER, we begin our systematic study of organic reactions and their mecha- nisms. Reaction mechanisms are step-by-step descriptions of how reactions proceed and are one of the most important unifying concepts in organic chemistry. We use the reactions of alkenes as the vehicle to introduce this concept. 129 130 CHAPTER 5 Reactions of Alkenes and Alkynes 5.1 What Are the Characteristic Reactions of Alkenes? The most characteristic reaction of alkenes is addition to the carbon–carbon double bond in such a way that the pi bond is broken and, in its place, sigma bonds are formed to two new atoms or groups of atoms. Several examples of reactions at the carbon–carbon double bond are shown in Table 5.1, along with the descriptive name(s) associated with each. -
[4 + 2] Annulation and Enyne Cross Metathesis
Communication pubs.acs.org/JACS Gold-Catalyzed Intermolecular Reactions of Propiolic Acids with Alkenes: [4 + 2] Annulation and Enyne Cross Metathesis † † † ‡ ‡ ‡ Hyun-Suk Yeom, Jaeyoung Koo, Hyun-Sub Park, Yi Wang, Yong Liang, Zhi-Xiang Yu,*, † and Seunghoon Shin*, † Department of Chemistry and Research Institute for Natural Sciences, Hanyang University, Seoul 133-791, Korea ‡ Beijing National Laboratory of Molecular Sciences (BNLMS), Key Laboratory of Bioorganic Chemistry and Molecular Engineering, College of Chemistry, Peking University, Beijing 100871, China *S Supporting Information Scheme 1. Propiolic Acid as a Functional Equivalent of 1,4- ABSTRACT: A gold-catalyzed intermolecular reaction of C,O-Dipole or Biscarbene propiolic acids with alkenes led to a [4 + 2] annulation or enyne cross metathesis. The [4 + 2] annulation proceeds with net cis-addition with respect to alkenes and provides an expedient route to α,β-unsaturated δ-lactones, for which preliminary asymmetric reactions were also demonstrated. For 1,2-disubstituted alkenes, unprecedented enyne cross metathesis occurred to give 1,3-dienes in a completely stereospecific fashion. DFT calculations and experiments indicated that the cyclobutene derivatives are not viable We commenced our study using propiolic acid (4a) and intermediates and that the steric interactions during 10 concerted σ-bond rearrangements are responsible for the styrene derivatives as substrates. After extensive optimization, observed unique stereospecificity. we found that treating styrene 3a with 4a -
"Point" of the Twist Danones.'4, 15 the Very Large Amplitudes
OPTICAL ROTATORY DISPERSION AND THE TWIST CONFORMATION OF CYCLOHEXANONES* BY CARL DJERASSI AND W. KLYNE CHEMISTRY DEPARTMENT, STANFORD UNIVERSITY, STANFORD, CALIFORNIA AND WESTFIELD COLLEGE. UNIVERSITY OF LONDON, LONDON, N.W. 3, ENGLAND Communicated April 25, 1962 The Octant Rule1 provides a theoretical basis for the study of optical rotatory dispersion curves of ketones. The application of this rule to extensive collections of data for cyclohexanone types from our two laboratories has been described else- where.2 3 Among the hundreds of curves recorded, a few stand out by reason of their unusually large amplitudes (positive or negative), which cannot be rationlized even in a roughly quantitative fashion by the usual octant treatment as applied to an all-chair conformation. Recently,4-8 there has been much interest in the existence of boat and modified boat conformations of cylohexane rings. Several authors9-11 have discussed forms intermediate between chairs and boats but the discussion has often been in rather general terms. However, Johnson et al.11 have recently provided thermodynamic evidence for the existence of an intermediate "twist" form in a lactone derived from trans-decalin. It is now suggested that this twist conformation provides a possible explanation of some of the grossly abnormal amplitudes found in decalone derivatives; the concept has also been used in dealing with some monocylic compounds.12 The twist conformation consists of two sets of contiguous coplanar C-atoms, 2, 1, 2' and 3, 4, 3'; C-1 and C4 are on the line of intersection of the two planes and may be called the "points" of the twist form. -
University Rawdah Q
University Intramolecular Reactions of 3-Acetoxy- aminoquinazolin-4(3//)-ones with Aromatic Rings A thesis submitted to the Faculty of Science in partial fulfilment of the requirements for the degree of Doctor of Philosophy in the Department of Chemistry at the University of Leicester by Rawdah Q. Lam NOVEMBER 2002 UMI Number: U168014 All rights reserved INFORMATION TO ALL USERS The quality of this reproduction is dependent upon the quality of the copy submitted. In the unlikely event that the author did not send a complete manuscript and there are missing pages, these will be noted. Also, if material had to be removed, a note will indicate the deletion. Dissertation Publishing UMI U168014 Published by ProQuest LLC 2013. Copyright in the Dissertation held by the Author. Microform Edition © ProQuest LLC. All rights reserved. This work is protected against unauthorized copying under Title 17, United States Code. ProQuest LLC 789 East Eisenhower Parkway P.O. Box 1346 Ann Arbor, Ml 48106-1346 Intramolecular Reactions of 3-AcetoxyaminoquinazoIin-4(3//)-ones with Aromatic Rings Rawdah Q. Lamphon ABSTRACT The intramolecular reactions of 3-acetoxyaminoquinazolin-4(3//)-ones (QNHOAc) with aromatic rings linked to the 2-position of the quinazolinone (Q) ring have been studied. It has been shown previously that the reactivity of QNHOAc compounds as aziridinating agents for less reactive double bonds is increased in the presence of trifluoracetic acid (TFA). Similarly (Chapter 2), reaction of the tethered aromatic ring with the acetoxyamino nitrogen occurred only in the presence of TFA in QNHOAc compounds with 4-methoxy- phenyl-ethyl or -propyl and phenoxy-methyl or -ethyl as the (Q)2-substituent. -
Elimination Reactions Are Described
Introduction In this module, different types of elimination reactions are described. From a practical standpoint, elimination reactions widely used for the generation of double and triple bonds in compounds from a saturated precursor molecule. The presence of a good leaving group is a prerequisite in most elimination reactions. Traditional classification of elimination reactions, in terms of the molecularity of the reaction is employed. How the changes in the nature of the substrate as well as reaction conditions affect the mechanism of elimination are subsequently discussed. The stereochemical requirements for elimination in a given substrate and its consequence in the product stereochemistry is emphasized. ELIMINATION REACTIONS Objective and Outline beta-eliminations E1, E2 and E1cB mechanisms Stereochemical considerations of these reactions Examples of E1, E2 and E1cB reactions Alpha eliminations and generation of carbene I. Basics Elimination reactions involve the loss of fragments or groups from a molecule to generate multiple bonds. A generalized equation is shown below for 1,2-elimination wherein the X and Y from two adjacent carbon atoms are removed, elimination C C C C -XY X Y Three major types of elimination reactions are: α-elimination: two atoms or groups are removed from the same atom. It is also known as 1,1-elimination. H R R C X C + HX R Both H and X are removed from carbon atom here R Carbene β-elimination: loss of atoms or groups on adjacent atoms. It is also H H known as 1,2- elimination. R C C R R HC CH R X H γ-elimination: loss of atoms or groups from the 1st and 3rd positions as shown below. -
Application of Enzymes in Regioselective and Stereoselective Organic Reactions
catalysts Review Application of Enzymes in Regioselective and Stereoselective Organic Reactions Ruipu Mu 1,*, Zhaoshuai Wang 2,3,* , Max C. Wamsley 1, Colbee N. Duke 1, Payton H. Lii 1, Sarah E. Epley 1, London C. Todd 1 and Patty J. Roberts 1 1 Department of Chemistry, Centenary College of Louisiana, Shreveport, LA 71104, USA; [email protected] (M.C.W.); [email protected] (C.N.D.); [email protected] (P.H.L.); [email protected] (S.E.E.); [email protected] (L.C.T.); [email protected] (P.J.R.) 2 Department of Pharmaceutical Science, College of Pharmacy, University of Kentucky, Lexington, KY 40536, USA 3 Center for Pharmaceutical Research and Innovation, College of Pharmacy, University of Kentucky, Lexington, KY 40536, USA * Correspondence: [email protected] (R.M.); [email protected] (Z.W.) Received: 22 June 2020; Accepted: 21 July 2020; Published: 24 July 2020 Abstract: Nowadays, biocatalysts have received much more attention in chemistry regarding their potential to enable high efficiency, high yield, and eco-friendly processes for a myriad of applications. Nature’s vast repository of catalysts has inspired synthetic chemists. Furthermore, the revolutionary technologies in bioengineering have provided the fast discovery and evolution of enzymes that empower chemical synthesis. This article attempts to deliver a comprehensive overview of the last two decades of investigation into enzymatic reactions and highlights the effective performance progress of bio-enzymes exploited in organic synthesis. Based on the types of enzymatic reactions and enzyme commission (E.C.) numbers, the enzymes discussed in the article are classified into oxidoreductases, transferases, hydrolases, and lyases.