Microorganisms and Influence the Host by Regulating Mucosal and Systemmatical Immunity
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Cytotoxic Effect of Some Digitalis Species; a Study of Selectivity
FABAD J. Pharm. Sci., 43(1), 25-29, 2018 RESEARCH ARTICLE Cytotoxic Effect of Some Digitalis Species; A Study of Selectivity Vahap Murat KUTLUAY *°, İclal SARAÇOĞLU* Cytotoxic Effect of Some Digitalis Species; A Study of Bazı Digitalis Türlerinin Sitotoksik Etkisi; Bir Selektivite Selectivity Çalışması SUMMARY ÖZET Our previous research, on the aerial parts and roots of three Daha önceki çalışmamızda üç farklı Digitalis türünün (D.davisiana different Digitalis species; D.davisiana Heywood, D.viridiflora Heywood, D.viridiflora Lindley ve D.grandiflora Miller) toprak üstü Lindley and D.grandiflora Miller against HEp-2 and HepG2 kısımlarının ve köklerinin HEp-2 ve HepG2 kanser hücre serileri üzerinde, cancer cell lines showed that aerial parts were more cytotoxic than toprak üstü kısımların köklere göre daha sitotoksik olduğu gösterilmiştir. roots. So for further research a comparative cytotoxic activity study Bu nedenle D.davisiana, D.viridiflora ve D.grandiflora’nın toprak üstü was performed on the aerial parts of D.davisiana, D.viridiflora kısımların üzerinde gerçekleştirilen araştırma ilerletilerek HeLa kanser and D.grandiflora against HeLa cancer cell line. 3Y1 non- hücresi üzerindeki sitotoksik etkisi incelenmiştir. Sağlıklı bir hücre cancerous cell line was used to determine the selectivity. All three olan 3Y1, selektivitenin değerlendirilebilmesi için kullanılmıştır. Her üç ekstre de HeLa hücreleri üzerinde kuvvetli sitotoksik etki göstermiş extracts showed strong cytotoxic activity on HeLa cells with IC50 values less than 15 μg/ml. However, observed cytotoxic activity on ve IC50 değerleri 15 μg/ml’nin altında hesaplanmıştır. Ekstrelerin 3Y1 hücreleri üzerinde sitotoksik etkileri daha düşük olmakla birlikte 3Y1 cells was found to be lower than that of HeLa cells with IC50 values in a range of 94.7-772.3 μg/ml. -
Gr up Industrial Microbiology & Biotechnology
SMGr up Industrial Microbiology & Biotechnology Sandeep Tiwari1, Syed Babar Jamal1, Paulo Vinícius Sanches Daltro de Carvalho1, Syed Shah Hassan1, Artur Silva2 and Vasco Azevedo1 1Universidade Federal de Minas Gerais, UFMG, Brazil 2Universidade Federal do Pará, Belém, PA, Brazil. *Corresponding author: Vasco Azevedo, Universidade Federal de Minas Gerais/Instituto de CiênciasBiológicas, Minas Gerais, Brazil, Email: [email protected] Published Date: February 15, 2015 ABSTRACT Microbes are small living organisms, quite diverse and adapt to various environments. They live on our planet long before that markedly effects the human, animals and plants life. Biotechnologically, molecular genetics of microbes is systematically manipulated, enable them possible through transfer of human insulin gene to a bacterium to treat diabetes, a milestone in for the production of beneficial products. The large-scale production of insulin was made the history of biotechnology. The microbial cultures are managed, monitored and maintained for their genotype/phenotype stability. Bacteria are one of the biotechnologically important microbes for example Escherichia coli, some species of lactic acid bacteria, and some viruses Using such as bacteriophages etc. recognized as anti-cancer oncolytic viruses. Moreover, yeast has also been used with broad-spectrum applications, such as Saccharomyces cerevisiae. biologically active primary and secondary metabolites like ethanol and antibiotics have been diverse genetic technologies, a number of beneficial products like microbial polymers, produced so far and used. Here, it would be injustice not to comment on the importance of vaccines for several infectious diseases through their ability to trigger the host immune system. Furthermore, roles of microorganisms in the production of pharmaceutical proteins A Text Book of Biotechnology | www.smgebooks.com 1 Copyright Azevedo V. -
Improved Taxonomy of the Genus Streptomyces
UNIVERSITEIT GENT Faculteit Wetenschappen Vakgroep Biochemie, Fysiologie & Microbiologie Laboratorium voor Microbiologie Improved taxonomy of the genus Streptomyces Benjamin LANOOT Scriptie voorgelegd tot het behalen van de graad van Doctor in de Wetenschappen (Biochemie) Promotor: Prof. Dr. ir. J. Swings Co-promotor: Dr. M. Vancanneyt Academiejaar 2004-2005 FACULTY OF SCIENCES ____________________________________________________________ DEPARTMENT OF BIOCHEMISTRY, PHYSIOLOGY AND MICROBIOLOGY UNIVERSITEIT LABORATORY OF MICROBIOLOGY GENT IMPROVED TAXONOMY OF THE GENUS STREPTOMYCES DISSERTATION Submitted in fulfilment of the requirements for the degree of Doctor (Ph D) in Sciences, Biochemistry December 2004 Benjamin LANOOT Promotor: Prof. Dr. ir. J. SWINGS Co-promotor: Dr. M. VANCANNEYT 1: Aerial mycelium of a Streptomyces sp. © Michel Cavatta, Academy de Lyon, France 1 2 2: Streptomyces coelicolor colonies © John Innes Centre 3: Blue haloes surrounding Streptomyces coelicolor colonies are secreted 3 4 actinorhodin (an antibiotic) © John Innes Centre 4: Antibiotic droplet secreted by Streptomyces coelicolor © John Innes Centre PhD thesis, Faculty of Sciences, Ghent University, Ghent, Belgium. Publicly defended in Ghent, December 9th, 2004. Examination Commission PROF. DR. J. VAN BEEUMEN (ACTING CHAIRMAN) Faculty of Sciences, University of Ghent PROF. DR. IR. J. SWINGS (PROMOTOR) Faculty of Sciences, University of Ghent DR. M. VANCANNEYT (CO-PROMOTOR) Faculty of Sciences, University of Ghent PROF. DR. M. GOODFELLOW Department of Agricultural & Environmental Science University of Newcastle, UK PROF. Z. LIU Institute of Microbiology Chinese Academy of Sciences, Beijing, P.R. China DR. D. LABEDA United States Department of Agriculture National Center for Agricultural Utilization Research Peoria, IL, USA PROF. DR. R.M. KROPPENSTEDT Deutsche Sammlung von Mikroorganismen & Zellkulturen (DSMZ) Braunschweig, Germany DR. -
Spontaneous Generation & Origin of Life Concepts from Antiquity to The
SIMB News News magazine of the Society for Industrial Microbiology and Biotechnology April/May/June 2019 V.69 N.2 • www.simbhq.org Spontaneous Generation & Origin of Life Concepts from Antiquity to the Present :ŽƵƌŶĂůŽĨ/ŶĚƵƐƚƌŝĂůDŝĐƌŽďŝŽůŽŐLJΘŝŽƚĞĐŚŶŽůŽŐLJ Impact Factor 3.103 The Journal of Industrial Microbiology and Biotechnology is an international journal which publishes papers in metabolic engineering & synthetic biology; biocatalysis; fermentation & cell culture; natural products discovery & biosynthesis; bioenergy/biofuels/biochemicals; environmental microbiology; biotechnology methods; applied genomics & systems biotechnology; and food biotechnology & probiotics Editor-in-Chief Ramon Gonzalez, University of South Florida, Tampa FL, USA Editors Special Issue ^LJŶƚŚĞƚŝĐŝŽůŽŐLJ; July 2018 S. Bagley, Michigan Tech, Houghton, MI, USA R. H. Baltz, CognoGen Biotech. Consult., Sarasota, FL, USA Impact Factor 3.500 T. W. Jeffries, University of Wisconsin, Madison, WI, USA 3.000 T. D. Leathers, USDA ARS, Peoria, IL, USA 2.500 M. J. López López, University of Almeria, Almeria, Spain C. D. Maranas, Pennsylvania State Univ., Univ. Park, PA, USA 2.000 2.505 2.439 2.745 2.810 3.103 S. Park, UNIST, Ulsan, Korea 1.500 J. L. Revuelta, University of Salamanca, Salamanca, Spain 1.000 B. Shen, Scripps Research Institute, Jupiter, FL, USA 500 D. K. Solaiman, USDA ARS, Wyndmoor, PA, USA Y. Tang, University of California, Los Angeles, CA, USA E. J. Vandamme, Ghent University, Ghent, Belgium H. Zhao, University of Illinois, Urbana, IL, USA 10 Most Cited Articles Published in 2016 (Data from Web of Science: October 15, 2018) Senior Author(s) Title Citations L. Katz, R. Baltz Natural product discovery: past, present, and future 103 Genetic manipulation of secondary metabolite biosynthesis for improved production in Streptomyces and R. -
Genomic and Phylogenomic Insights Into the Family Streptomycetaceae Lead to Proposal of Charcoactinosporaceae Fam. Nov. and 8 No
bioRxiv preprint doi: https://doi.org/10.1101/2020.07.08.193797; this version posted July 8, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Genomic and phylogenomic insights into the family Streptomycetaceae 2 lead to proposal of Charcoactinosporaceae fam. nov. and 8 novel genera 3 with emended descriptions of Streptomyces calvus 4 Munusamy Madhaiyan1, †, * Venkatakrishnan Sivaraj Saravanan2, † Wah-Seng See-Too3, † 5 1Temasek Life Sciences Laboratory, 1 Research Link, National University of Singapore, 6 Singapore 117604; 2Department of Microbiology, Indira Gandhi College of Arts and Science, 7 Kathirkamam 605009, Pondicherry, India; 3Division of Genetics and Molecular Biology, 8 Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur, 9 Malaysia 10 *Corresponding author: Temasek Life Sciences Laboratory, 1 Research Link, National 11 University of Singapore, Singapore 117604; E-mail: [email protected] 12 †All these authors have contributed equally to this work 13 Abstract 14 Streptomycetaceae is one of the oldest families within phylum Actinobacteria and it is large and 15 diverse in terms of number of described taxa. The members of the family are known for their 16 ability to produce medically important secondary metabolites and antibiotics. In this study, 17 strains showing low 16S rRNA gene similarity (<97.3 %) with other members of 18 Streptomycetaceae were identified and subjected to phylogenomic analysis using 33 orthologous 19 gene clusters (OGC) for accurate taxonomic reassignment resulted in identification of eight 20 distinct and deeply branching clades, further average amino acid identity (AAI) analysis showed 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.07.08.193797; this version posted July 8, 2020. -
Drug Discovery and Development with Plant-Derived Compounds
Progress in Drug Research Founded by Ernst Jucker Series Editors Prof. Dr. Paul L. Herrling Alex Matter, M.D., Director Novartis International AG Novartis Institute for Tropical Diseases CH-4002 Basel 10 Biopolis Road, #05-01 Chromos Switzerland Singapore 138670 Singapore Progress in Drug Research Natural Compounds as Drugs Volume I Vol. 65 Edited by Frank Petersen and René Amstutz Birkhäuser Basel • Boston • Berlin Editors Frank Petersen René Amstutz Novartis Pharma AG Lichtstrasse 35 4056 Basel Switzerland Library of Congress Control Number: 2007934728 Bibliographic information published by Die Deutsche Bibliothek Die Deutsche Bibliothek lists this publication in the Deutsche Nationalbibliografie; detailed bibliographic data is available in the internet at http://dnb.ddb.de ISBN 978-3-7643-8098-4 Birkhäuser Verlag AG, Basel – Boston – Berlin The publisher and editor can give no guarantee for the information on drug dosage and administration contained in this publication. The respective user must check its accuracy by consulting other sources of reference in each individual case. The use of registered names, trademarks etc. in this publication, even if not identified as such, does not imply that they are exempt from the relevant protective laws and regulations or free for general use. This work is subject to copyright. All rights are reserved, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, re-use of illustrations, recitation, broad- casting, reproduction on microfilms or in other ways, and storage in data banks. For any kind of use, permission of the copyright owner must be obtained. © 2008 Birkhäuser Verlag AG Basel · Boston · Berlin P.O. -
Prof. Dr. Faik Yaltirik'in Kizinin Arşivinden Dr. Davis
PROF. DR. FAİK YALTIRIK’IN KIZININ ARŞİVİNDEN DR. DAVIS “Peter Hadland Davis: outstanding botanist” Rengigül Ural, 23 Nisan 2021 “Sevgili Rengigül Hanım, Dr. Davis'i platform (Kültürel ve Doğal Mirası İzleme) için yazabilirseniz seviniriz. Davis’in külliyatı tam anlamıyla anıtsal bir araştırma. Yaptığı proje inanılmaz. Ruhu şad olsun. Rahmetli Davis ile babanızın ülkemizin botanik kültürüne yaptıkları unutulmaz. Her türlü takdirin üzerinde. Ne yapsak az.” Nezih Başgelen, 22 Nisan 2021 “TERCİHLERE SAYGIYI ALTI YAŞIMDA EDINBURGH'TAKİ İLKOKULUMDA ÖĞRENDİM” konu başlığımla yazım şöyle idi: "Babam, Royal Botanic Garden’daki bilimsel çalışmalarına devam ediyordu. Akademik arkadaşları bizlere yardımcı oluyordu. Hepsi birbirinden iyi insanlardı. Araştırma grubunun başı Dr. Davis’ti. Ian Hedge, Mark Coode ve ailesi. Jennifer ve annesi. Jennifer, güleç yüzlü, uzun boylu, kumral dalgalı saçlı, cana yakın ve zarif bir hanımdı. Hele annesi ne kadar da tatlı, görmüş geçirmiş, gönül alan bir Büyük Hanım’dı. Babam bu şehirdeki ilk Türk bilim adamıydı. Ben de acaba ilk Türk kızı mıydım bu okulda? Annem ve babam ise her gün ne yaptığımızı soruyor, ben de anlatıyordum. Bir gün yine târif ettim sınıfta ne yaptığımızı. Hemen anladılar. Sabah dua ediliyordu. Annem “Sen, Müslümansın, put çıkartma. Duaya iştirak et. Dua her dilde duadır, kabul edilir. Ya da içinden bizim duamızı yap.” dedi. Ben bunu, öğretmenime nasıl anlatacaktım? Tabiî ki babam gelip, izâh etti ve anlayış ile karşılandı. Tercihlere saygıyı, altı yaşımda öğrenmiş oldum. Onlar “cross” işâreti yaptılar, ben avuçlarımı açtım. Çocuk duamız ve Tanrı’mız “bir” idi aslında... Okulun en alt katındaki, büyük salonu Cuma günleri; çarşı, pazar, yaya kaldırımı ile şehirde yaşamı öğreten bir düzene sokuyorlardı biz çocuklar için. -
The Foxgloves (Digitalis) Revisited*
Reviews The Foxgloves (Digitalis) Revisited* Author Wolfgang Kreis Affiliation Supporting information available online at Lehrstuhl Pharmazeutische Biologie, Department Biology, http://www.thieme-connect.de/products FAU Erlangen-Nürnberg, Erlangen, Germany ABSTRACT Key words Digitalis, Plantaginaceae, cardiac glycosides, plant biotech- This review provides a renewed look at the genus Digitalis. nology, biosynthesis, plant tissue culture, phylogeny Emphasis will be put on those issues that attracted the most attention or even went through paradigmatic changes since received March 17, 2017 the turn of the millennium. PubMed and Google Scholar were “ ” “ ” revised April 27, 2017 used ( Digitalis and Foxglove were the key words) to iden- accepted May 8, 2017 tify research from 2000 till 2017 containing data relevant enough to be presented here. Intriguing new results emerged Bibliography from studies related to the phylogeny and taxonomy of the DOI https://doi.org/10.1055/s-0043-111240 genus as well as to the biosynthesis and potential medicinal Published online May 23, 2017 | Planta Med 2017; 83: 962– uses of the key active compounds, the cardiac glycosides. 976 © Georg Thieme Verlag KG Stuttgart · New York | Several Eastern and Western Foxgloves were studied with re- ISSN 0032‑0943 spect to their propagation in vitro. In this context, molecular biology tools were applied and phytochemical analyses were Correspondence conducted. Structure elucidation and analytical methods, Prof. Dr. Wolfgang Kreis which have experienced less exciting progress, will not be Department Biology, FAU Erlangen-Nürnberg considered here in great detail. Staudtstr. 5, 91058 Erlangen, Germany Phone:+4991318528241,Fax:+4991318528243 [email protected] Taxus species is a prime example [4]. -
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Environmental and Experimental Biology (2014) 12: 167–178 Original Paper Direct organogenesis, phytochemical screening and assessment of genetic stability in clonally raised Chlorophytum borivilianum Sautrik Basu1, Timir Baran Jha2* 1Department of Botany, Maulana Azad College, 8 Rafi Ahmed Kidwai Road, Kolkata 13, India 2P.G Department of Botany, Barasat Govt. College, Barasat, Kolkata 700124, India *Corresponding author, E-mail: [email protected] Abstract Keeping in mind the immense commercial and pharmacological importance of the rare aphrodisiac herb safed musli (Chlorophytum borivilianum Sant et Fern), the present investigation describes the development of a rapid and efficient protocol for direct plant regeneration from leaf explants of two populations of C. borivilianum collected from different agroclimatic zones of India. The induction of shoot initials was achieved on both Murashige and Skoog’s (MS) and Gamborg’s basal media supplemented with varying levels of 6-benzyladenine (1.11 to 8.90 μM) and thidiazuron (1.14 to 9.08 μM). MS basal medium supplemented with 4.54 μM thidiazuron was found ideal for shoot induction and gave rise to numerous shoot primordia within three weeks without any callus phase. Seperation of shoot clumps and their subsequent transfer to MS basal medium supplemented with 4.54 μM thidiazuron resulted in differentiation of more than 90% of the shoot initials into well developed shoots. Healthy shoots were rooted on half strength MS supplemented with varying concentrations of indole-3-acetic acid (2.28 to 11.42 μM), indole-3-butyric acid (1.97 to 9.80 μM) and naphthalene acetic acid (2.7 to 10.8 μM). -
Research Article Studies on a Marine Streptomyces Fradiae BW2-7
Scholars Academic Journal of Biosciences (SAJB) ISSN 2321-6883 (Online) Sch. Acad. J. Biosci., 2014; 2(11): 746-761 ISSN 2347-9515 (Print) ©Scholars Academic and Scientific Publisher (An International Publisher for Academic and Scientific Resources) www.saspublisher.com Research Article Studies on a marine Streptomyces fradiae BW2-7 producing glycopeptide antibiotic Vancomycin effective against skin pathogens Ranjith Kumar M1,2, Brindha Priyadarisini V1 , Srigopalram S2, Senthil Kumar Thamil arasan2, Ill Sup Nou2* 1Clinical Biotechnology Laboratory, Department of Microbial Biotechnology, Bharathiar University, Coimbatore, 641-046, India 2Department of Horticulture, Sunchon National University, Suncheon, 540-950, South Korea *Corresponding author Ill Sup Nou Email: Abstract: A total of 124 marine actinomycetes were isolated from east and west coastal regions of Indian peninsula and assessed for its antimicrobial activity. A potent actinomycete isolated from west coast of India was selected by its antibacterial and antifungal activities and was identified as Streptomyces fradiae BW2-7 using 16S rRNA sequencing which produces antibacterial metabolite extracellularly and antifungal metabolite intracellularly under submerged fermentation conditions. Crude extract of the strain showed board antimicrobial activity spectra against the bacterial skin pathogens Staphylococcus aureus (25mm), Staphylococcus epidermidis (21mm) and fungal pathogen Trichophyton rubrum (15mm). Fermentation conditions for the production of antibiotic were optimized by using statistical method, Response Surface Methodology (RSM). Purified compound was subjected to structural elucidation. After medium optimization the antibiotics activity showed 8% improvement compared with unoptimized condition. The isolated compound MRK1 was found to be Vancomycin and showed effective against skin pathogens. This is the first report, where the compound was isolated from a new source S. -
Antimicrobial, Antidermatophytic, and Cytotoxic Activities from Streptomyces Sp
Hamed et al. Bulletin of the National Research Centre (2018) 42:22 Bulletin of the National https://doi.org/10.1186/s42269-018-0022-5 Research Centre RESEARCH Open Access Antimicrobial, antidermatophytic, and cytotoxic activities from Streptomyces sp. MER4 isolated from Egyptian local environment Ahmed A. Hamed1,2* , Mohamed S. Abdel-Aziz1,2, Mohamed Fadel1 and Mohamed F. Ghali3 Abstract Background: Recently, actinomycetes have attracted the attention of researchers worldwide. They can produce secondary metabolites with antibacterial, antifungal, antiviral, and antitumoral properties. Results: Streptomyces sp. MER4 (accession no. KM099241) was isolated from the pyramid region, Giza, Egypt. This strain was previously mentioned for its ability to produce antidermatophytic bioactive metabolites. Scale-up fermentation and fractionation of the extract has been established using different solvents. The ethanol fraction exhibited a considerable antidermatophytic effect (19.8, 21.2, and 20.3 mm for Trichophyton mentagrophyes, Microsporum canis,andMicrosporum gypseum, respectively), antimicrobial (10, 8, 7, 9, and 9 mm for Pseudomonas aeruginosa, Staphylococcus aureus, Candida albicans, Bacillus subtilis,andAspergillus niger, respectively), and cytotoxic activity (inhibition of 78.48%). Further purification of the ethanol fraction was done, and one promising compound was produced. This compound was intensely characterized and elucidated by studying its spectral date including nuclear magnetic resonance (NMR) and liquid chromatography mass spectroscopy (LC/MS). The produced compound was identified as JBIR-58 (salicylamide) derivative compound. Conclusions: Streptomyces sp. MER4 has been identified genetically and screened for its ability to produce bioactive compound with antibacterial antitumor and antidermatophytic agent. The scale-up fermentation, purification, and structure elucidation led to pure compound named salicylamide derivatives JBIR-58 from the fermentation broth of Streptomyces sp. -
Synthesis and Accumulation of Amylase-Trypsin Inhibitors And
Call et al. BMC Plant Biology (2021) 21:113 https://doi.org/10.1186/s12870-021-02886-x RESEARCH ARTICLE Open Access Synthesis and accumulation of amylase- trypsin inhibitors and changes in carbohydrate profile during grain development of bread wheat (Triticum aestivum L.) Lisa Call1,2†, Elisabeth Haider1†, Stefano D’Amico1, Elisabeth Reiter1 and Heinrich Grausgruber3* Abstract Background: Recent studies indicate that amylase-trypsin inhibitors (ATIs) and certain carbohydrates referred to as FODMAPs (fermentable oligo-, di-, monosaccharides and polyols) play an important role in promoting wheat sensitivity. Hitherto, no study has investigated the accumulation of ATIs during the development of the wheat caryopsis. We collected caryopses of common wheat cv. ‘Arnold’ at eight different grain developmental stages to study compositional changes in ATI and FODMAP content. Results: The harvested caryopses were analysed for their size, protein and carbohydrate concentrations. ATIs were further characterized by MALDI-TOF MS, and their trypsin inhibition was evaluated by an enzymatic assay. The results showed that ATI accumulation started about 1 week after anthesis and subsequently increased steadily until physiological maturity. However, the biological activity of ATIs in terms of enzyme inhibition was not detectable before about 4 weeks after anthesis. Carbohydrate analysis revealed the abundance of short-chain fructans in early stages of grain development, whereas non-water-soluble carbohydrates increased during later developmental stages. Conclusions: The results provide new insights into the complex metabolisms during grain filling and maturation, with particular emphasis on the ATI content as well as the inhibitory potential towards trypsin. The time lag between ATI accumulation and development of their biological activity is possibly attributed to the assembling of ATIs to dimers and tetramers, which seems to be crucial for their inhibitory potential.