Revision of Jaxea Kuemeli BACHMAYER, 1954 (Decapoda
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Anchialine Cave Biology in the Era of Speleogenomics Jorge L
International Journal of Speleology 45 (2) 149-170 Tampa, FL (USA) May 2016 Available online at scholarcommons.usf.edu/ijs International Journal of Speleology Off icial Journal of Union Internationale de Spéléologie Life in the Underworld: Anchialine cave biology in the era of speleogenomics Jorge L. Pérez-Moreno1*, Thomas M. Iliffe2, and Heather D. Bracken-Grissom1 1Department of Biological Sciences, Florida International University, Biscayne Bay Campus, North Miami FL 33181, USA 2Department of Marine Biology, Texas A&M University at Galveston, Galveston, TX 77553, USA Abstract: Anchialine caves contain haline bodies of water with underground connections to the ocean and limited exposure to open air. Despite being found on islands and peninsular coastlines around the world, the isolation of anchialine systems has facilitated the evolution of high levels of endemism among their inhabitants. The unique characteristics of anchialine caves and of their predominantly crustacean biodiversity nominate them as particularly interesting study subjects for evolutionary biology. However, there is presently a distinct scarcity of modern molecular methods being employed in the study of anchialine cave ecosystems. The use of current and emerging molecular techniques, e.g., next-generation sequencing (NGS), bestows an exceptional opportunity to answer a variety of long-standing questions pertaining to the realms of speciation, biogeography, population genetics, and evolution, as well as the emergence of extraordinary morphological and physiological adaptations to these unique environments. The integration of NGS methodologies with traditional taxonomic and ecological methods will help elucidate the unique characteristics and evolutionary history of anchialine cave fauna, and thus the significance of their conservation in face of current and future anthropogenic threats. -
From Ghost and Mud Shrimp
Zootaxa 4365 (3): 251–301 ISSN 1175-5326 (print edition) http://www.mapress.com/j/zt/ Article ZOOTAXA Copyright © 2017 Magnolia Press ISSN 1175-5334 (online edition) https://doi.org/10.11646/zootaxa.4365.3.1 http://zoobank.org/urn:lsid:zoobank.org:pub:C5AC71E8-2F60-448E-B50D-22B61AC11E6A Parasites (Isopoda: Epicaridea and Nematoda) from ghost and mud shrimp (Decapoda: Axiidea and Gebiidea) with descriptions of a new genus and a new species of bopyrid isopod and clarification of Pseudione Kossmann, 1881 CHRISTOPHER B. BOYKO1,4, JASON D. WILLIAMS2 & JEFFREY D. SHIELDS3 1Division of Invertebrate Zoology, American Museum of Natural History, Central Park West @ 79th St., New York, New York 10024, U.S.A. E-mail: [email protected] 2Department of Biology, Hofstra University, Hempstead, New York 11549, U.S.A. E-mail: [email protected] 3Department of Aquatic Health Sciences, Virginia Institute of Marine Science, College of William & Mary, P.O. Box 1346, Gloucester Point, Virginia 23062, U.S.A. E-mail: [email protected] 4Corresponding author Table of contents Abstract . 252 Introduction . 252 Methods and materials . 253 Taxonomy . 253 Isopoda Latreille, 1817 . 253 Bopyroidea Rafinesque, 1815 . 253 Ionidae H. Milne Edwards, 1840. 253 Ione Latreille, 1818 . 253 Ione cornuta Bate, 1864 . 254 Ione thompsoni Richardson, 1904. 255 Ione thoracica (Montagu, 1808) . 256 Bopyridae Rafinesque, 1815 . 260 Pseudioninae Codreanu, 1967 . 260 Acrobelione Bourdon, 1981. 260 Acrobelione halimedae n. sp. 260 Key to females of species of Acrobelione Bourdon, 1981 . 262 Gyge Cornalia & Panceri, 1861. 262 Gyge branchialis Cornalia & Panceri, 1861 . 262 Gyge ovalis (Shiino, 1939) . 264 Ionella Bonnier, 1900 . -
(Decapoda, Gebiidea, Upogebiidae) in the South China Sea
THE SUBFAMILY NEOGEBICULINAE (DECAPODA, GEBIIDEA, UPOGEBIIDAE) IN THE SOUTH CHINA SEA BY WENLIANG LIU1,3) and RUIYU LIU (J.Y. LIU)2,4) 1) Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China; Graduate University, Chinese Academy of Sciences, Beijing 100049, China 2) Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China ABSTRACT Three species of the subfamily Neogebiculinae Sakai, 2006 are recorded from the Beibu Gulf (Tonkin Gulf), northern South China Sea. The first species, Neogebicula wistari Ngoc-Ho, 1995 is recorded for the first time from Chinese waters. The other two are described as new to science in this paper. The present authors take great pleasure to name them as Paragebicula bijdeleyi sp.nov.andNeogebicula holthuisi sp. nov. to honor the great carcinologist, the late Dr. Lipke Bijdeley Holthuis. Neogebicula holthuisi is closely allied to N. monochela (Sakai, 1967) but differs markedly in having an elongate rostrum. Paragebicula bijdeleyi sp. nov. is closely related to P. edentata (Lin, Ngoc-Ho & Chan, 2001) but differs markedly in the rostrum bearing marginal denticles. RÉSUMÉ Trois espèces de la sous-famille des Neogebiculinae Sakai, 2006 sont signalées dans le Golfe de Beibu (Golfe de Tonkin), nord de la mer de Chine du Sud. Le première espèce, Neogebicula wistari Ngoc-Ho, 1995 est signalée pour la première fois dans les eaux chinoises. Les deux autres sont décrites dans cet article comme nouvelles pour la science. C’est avec un grand plaisir que les auteurs les dédient à la mémoire du grand carcinologiste Dr. Lipke Bijdeley Holthuis, en les nommant Paragebicula bijdeleyi sp. -
Biology of Shallow Marine Ichnology: a Modern Perspective
Vol. 2: 255–268, 2008 AQUATIC BIOLOGY Printed June 2008 doi: 10.3354/ab00055 Aquat Biol Published online June 19, 2008 Contribution to the Theme Section ‘Bioturbation in aquatic environments: linking past and present’ OPENPEN ACCESSCCESS Biology of shallow marine ichnology: a modern perspective Murray K. Gingras1,*, Shahin E. Dashtgard2, James A. MacEachern2, S. George Pemberton1 1Department of Earth and Atmospheric Sciences, 1-26 Earth Science Building, University of Alberta, Edmonton, Alberta T6G 2E3, Canada 2Department of Earth Sciences, Simon Fraser University, Burnaby, British Columbia V5A 1S6, Canada ABSTRACT: This study considers the construction and functionality of biogenic structures made by marine, vermiform nemerteans, polychaetes and hemichordates; marine crustaceans; motile bivalves; motile echinoderms; and sponges and sea anemones. We report on a range of modern biogenic struc- tures similar to several known ichnogenera. Vermiform animals dominantly occupy vertical burrows that range from simple through helical shafts to Y- and U-shapes. Horizontal traces made by worms range in form, but are dominated by branching and variably sinuous to meandering burrows. Crustaceans primarily excavate open burrow systems that possess a range of architectures that are similar to either Thalassinoides or Psilonichnus. Smaller crustaceans, such as amphipods, mix the sediment. Bivalve traces vary in form, but generally preserve evidence of vertically oriented filter or interface-deposit feed- ing from a stationary location, rapid vertical escape, or horizontal grazing. Echinoderms dominantly pre- serve body impressions and motility traces, such as Asteriacites. An important class of biogenic structure, Scolicia and Bichordites, are made by urchins. Finally, sea anemones can generate large, penetrative, conical biogenic structures. -
Determination of the Biologically Relevant Sampling Depth for Terrestrial and Aquatic Ecological Risk Assessments
EPA/600/R-15/176 ERASC-015F October 2015 DETERMINATION OF THE BIOLOGICALLY RELEVANT SAMPLING DEPTH FOR TERRESTRIAL AND AQUATIC ECOLOGICAL RISK ASSESSMENTS Ecological Risk Assessment Support Center National Center for Environmental Assessment Office of Research and Development U.S. Environmental Protection Agency Cincinnati, OH NOTICE This document has been subjected to the Agency’s peer and administrative review and has been approved for publication as an EPA document. Mention of trade names or commercial products does not constitute endorsement or recommendation for use. Cover art on left-hand side is an adaptation of illustrations in two Soil Quality Information Sheets published by the USDA, Natural Resources Conservation Service in May 2001: 1) Rangeland Sheet 6, Rangeland Soil Quality—Organic Matter, and 2) Rangeland Sheet 8, Rangeland Soil Quality—Soil Biota. Cover art on right-hand side is an adaptation of an illustration from Life in the Chesapeake Bay, by Alice Jane Lippson and Robert L. Lippson, published by Johns Hopkins University Press, 2715 North Charles Street, Baltimore, MD 21218. Preferred Citation: U.S. EPA (U.S. Environmental Protection Agency). 2015. Determination of the Biologically Relevant Sampling Depth for Terrestrial and Aquatic Ecological Risk Assessments. National Center for Environmental Assessment, Ecological Risk Assessment Support Center, Cincinnati, OH. EPA/600/R-15/176. ii TABLE OF CONTENTS LIST OF TABLES ........................................................................................................................ -
Axiidea and Gebiidea (Crustacea: Decapoda) of Costa Rica
©Naturhistorisches Museum Wien, download unter www.biologiezentrum.at Ann. Naturhist. Mus. Wien, B 115 37-55 Wien, März 2013 Axiidea and Gebiidea (Crustacea: Decapoda) of Costa Rica P. C. Dworschak* Abstract Axiidea and Gebiidea housed in the collections of the Museo de Zoologia, Universidad de Costa Rica, were studied together with newly collected material. Ninety-one lots were inspected; specimens of eleven lots newly identified; identifications of six lots have been revised. This resulted in twelve new records for Pacific Costa Rica (Aethogebia gorei, Axianassa mineri , Axiopsis baronai, Calocarides cf. quinqueseriatus, Covalaxius galapagensis, Corallianassa xutha, Neocallichinis cf. mortenseni, Paraxiopsis cf. spinipleura, Upogebia longipollex, Upogebia onychion, Upogebia tenuipollex, and Upogebia veleronis), mainly from Isla de Coco, and one new record for Caribbean Costa Rica ( Axiopsis serratifrons). Key words: Thalassinidea, Axiidea, Gebiidea, Costa Rica Introduction Axiidean and gebiidean shrimps (Crustacea, Decapoda, formerly Thalassinidea) are among the most common macrofauna elements in the intertidal or the shallow subtidal (D w o r sc h a k , 2000, 2005). They have received special attention as their burrowing activity greatly influences the chemical and geophysical properties of sediments (Z iebis et al. 1996) and have therefore been identified as important ecosystem engineers (B er k en b u sc h & R o w d en 2003). The axiidean and gebiidean fauna of Costa Rica has been summarised as part of the decapod fauna (as Thalassinidea) by V a rg a s & C ortes (1999a) for the Caribbean and by V a r g a s & C ortes (1999b) for the Pacific coast. They list only two species for the Caribbean and 13 for the Pacific, respectively. -
Methods Collecting Axiidea and Gebiidea (Decapoda): a Review 5-21 Ann
ZOBODAT - www.zobodat.at Zoologisch-Botanische Datenbank/Zoological-Botanical Database Digitale Literatur/Digital Literature Zeitschrift/Journal: Annalen des Naturhistorischen Museums in Wien Jahr/Year: 2015 Band/Volume: 117B Autor(en)/Author(s): Dworschak Peter C. Artikel/Article: Methods collecting Axiidea and Gebiidea (Decapoda): a review 5-21 Ann. Naturhist. Mus. Wien, B 117 5–21 Wien, Jänner 2015 Methods collecting Axiidea and Gebiidea (Decapoda): a review P.C. Dworschak* Abstract Axiidea and Gebiidae (formerly treated together as Thalassinidea) have a crypic lifestyle. Collecting these shrimp therefore requires special field methods. The present paper reviews these methods according to habitats and provides recommendations as well as data on their efficiency. In addition, information on the preservation of these animals is presented. Key words: Thalassinidea, Axiidea, Gebiidea, method, collecting, preservation Zusammenfassung Maulwurfskrebse aus den zwei Unterordungen der zehnfüßigen Krebes Axiidea und Gebiidea (früher zusammengefaßt als Thalassinidea) kommen in temperaten, subtropischen und tropischen Meeren vor und zeichnen sich durch ein Leben im Verborgenen aus. Viele Arten legen tiefe und ausgedehnte Bauten an. Diese Lebensweise erfordert eigene Methoden, um die Krebse zu fangen. Die verschiedenen Fangmethoden werden hier vorgestellt und Angaben zur Effizienz gemacht. Zusätzlich werden Angaben zur Fixierung und Konservierung der Krebse präsentiert. Introduction Formerly treated together as the thalassinideans, the infraorders Gebiidea DE SAINT LAURENT, 1979 and Axiidea DE SAINT LAURENT, 1979 represent two distinctly separate groups of decapods (ROBLES et al. 2009; BRACKEN et al. 2009; DWORSCHAK et al. 2012, POORE et al., 2014). They are commonly called mud shrimp or ghost shrimp, although they are only distantly related to true (dendrobranchiate or caridean) shrimp. -
An Overview of the Decapoda with Glossary and References
January 2011 Christina Ball Royal BC Museum An Overview of the Decapoda With Glossary and References The arthropods (meaning jointed leg) are a phylum that includes, among others, the insects, spiders, horseshoe crabs and crustaceans. A few of the traits that arthropods are characterized by are; their jointed legs, a hard exoskeleton made of chitin and growth by the process of ecdysis (molting). The Crustacea are a group nested within the Arthropoda which includes the shrimp, crabs, krill, barnacles, beach hoppers and many others. The members of this group present a wide range of morphology and life history, but they do have some unifying characteristics. They are the only group of arthropods that have two pairs of antenna. The decapods (meaning ten-legged) are a group within the Crustacea and are the topic of this key. The decapods are primarily characterized by a well developed carapace and ten pereopods (walking legs). The higher-level taxonomic groups within the Decapoda are the Dendrobranchiata, Anomura, Brachyura, Caridea, Astacidea, Axiidea, Gebiidea, Palinura and Stenopodidea. However, two of these groups, the Palinura (spiny lobsters) and the Stenopodidea (coral shrimps), do not occur in British Columbia and are not dealt with in this key. The remaining groups covered by this key include the crabs, hermit crabs, shrimp, prawns, lobsters, crayfish, mud shrimp, ghost shrimp and others. Arthropoda Crustacea Decapoda Dendrobranchiata – Prawns Caridea – Shrimp Astacidea – True lobsters and crayfish Thalassinidea - This group has recently -
Crustacea, Decapoda, Axiidae)
Memoirs of the Museum of Victoria 54: 79-120 (1994) A PHYLOGENY OF THE FAMILIES OF THALASSINIDEA (CRUSTACEA: DECAPODA) WITH KEYS TO FAMILIES AND GENERA BY GARY C. B. POORE Department of Crustacea, Museum of Victoria, 71 Victoria Crescent, Abbotsford, Victoria 3067, Australia Abstract Poore, G.C.B., 1994. A phytogeny of the families of Thalassinidea (Crustacea: Decapo- da) with keys to families and genera. Memoirs of the Museum of Victoria 54: 79-120. The confused taxonomy of the Thalassinidea (73 genera recognised here) is briefly reviewed. States of 93 characters are discussed with reference to five outgroup genera of reptant decapods. The linea thalassinica is concluded to be homologous with the linea anomurica of Anomura. Its loss in Axioidea is thought secondarily derived. Burrowing behav iour in callianassoids is coincident with loss of the interaction between the posterior margin of the carapace and anterolateral lobes on abdominal somite 1, and with loss of abdominal pleura. Characters from gills, mouthparts and pereopods are discussed. Pereopodal spiniform setae are a unifying feature of some axioids. Auxiliary surfaces on the margins of pleopods of Callianidea and Michelea are not homologous. Setal-rows, once thought to unite several genera into the CalUanideidae are shown to be more widespread and this family, as previ ously conceived, to be polyphyletic. A computer-aided phylogenetic analysis of the families, represented by 22 genera, has confirmed the monophyly of the infraorder, based largely on the unique possession of a setose lower margin to pereopod 2, The Thalassinidea are divided into three superfamilies: Thalassinoidea and Callianassoidea, more closely related to each other than to Axioidea. -
Revealed from Complete Mitochondrial Genomes Feng-Jiau Lin1†, Yuan Liu2†, Zhongli Sha2, Ling Ming Tsang3, Ka Hou Chu3, Tin-Yam Chan4, Ruiyu Liu2 and Zhaoxia Cui2*
Lin et al. BMC Genomics 2012, 13:631 http://www.biomedcentral.com/1471-2164/13/631 RESEARCH ARTICLE Open Access Evolution and phylogeny of the mud shrimps (Crustacea: Decapoda) revealed from complete mitochondrial genomes Feng-Jiau Lin1†, Yuan Liu2†, Zhongli Sha2, Ling Ming Tsang3, Ka Hou Chu3, Tin-Yam Chan4, Ruiyu Liu2 and Zhaoxia Cui2* Abstract Background: The evolutionary history and relationships of the mud shrimps (Crustacea: Decapoda: Gebiidea and Axiidea) are contentious, with previous attempts revealing mixed results. The mud shrimps were once classified in the infraorder Thalassinidea. Recent molecular phylogenetic analyses, however, suggest separation of the group into two individual infraorders, Gebiidea and Axiidea. Mitochondrial (mt) genome sequence and structure can be especially powerful in resolving higher systematic relationships that may offer new insights into the phylogeny of the mud shrimps and the other decapod infraorders, and test the hypothesis of dividing the mud shrimps into two infraorders. Results: We present the complete mitochondrial genome sequences of five mud shrimps, Austinogebia edulis, Upogebia major, Thalassina kelanang (Gebiidea), Nihonotrypaea thermophilus and Neaxius glyptocercus (Axiidea). All five genomes encode a standard set of 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes and a putative control region. Except for T. kelanang, mud shrimp mitochondrial genomes exhibited rearrangements and novel patterns compared to the pancrustacean ground pattern. Each of the two Gebiidea species (A. edulis and U. major) and two Axiidea species (N. glyptocercus and N. thermophiles) share unique gene order specific to their infraorders and analyses further suggest these two derived gene orders have evolved independently. Phylogenetic analyses based on the concatenated nucleotide and amino acid sequences of 13 protein-coding genes indicate the possible polyphyly of mud shrimps, supporting the division of the group into two infraorders. -
Crustacea: Decapoda: Thalassinidea) Using Nuclear 18S Rdna and Mitochondrial16s Rdna
invertebrate Systematics, 2002, 16, 839- 847 Molecular phylogeny of the mud lobsters and mud shrimps (Crustacea: Decapoda: Thalassinidea) using nuclear 18S rDNA and mitochondrial16S rDNA C. C. TudgeA,C and C. W CunninghamB ABiology Department, American University, 4400 Massachusetts Ave. NW, Washington, DC 20016-8007, USA and Department of Systematic Biology, National Museum of Natural History, Smithsonian Institution, Washington, DC 20560-0163, USA. 8 Department of Zoology, Duke University, Durham, NC 27708-0325, USA. .. cTo whom correspondance should be addressed. Email: [email protected] Abstract. Partial sequences of the 18S nuclear and 16S mitochondrial ribosomal genes were obtained for 14 species of thalassinidean shrimp (families Callianassidae, Laomediidae, Strahlaxiidae, Thalassinidae and Upogebiidae) and a further six species in related decapod infraorders (families Aeglidae, Astacidae, Lithodidae, Palinuridae, Raninidae and Scyllaridae). Maximum-likelihood and Bayesian analyses show equivocal support for the monophyly of the Thalassinidea, but show strong support for division of the infraorder into two major clades. This dichotomy separates representatives in the Upogebiidae, Laomediidae and Thalassinidae from those in the Strahlaxiidae and Callianassidae. The Laomediidae is shown to be paraphyletic, with the thalassinid species, Thalassina squamifera, being placed on a branch between Axianassa and a clade comprising Jaxea and Laomedia, the three current laomediid genera. For a monophyletic Laomediidae, the family Axianassidae should be resurrected for the genus Axianassa. Introduction relationships among four thalassinidean families and the Anomura (Fig. 1B). A period of 56 years elapsed before any The decapod infraorder Thalassinidea is a group of cryptic, further publications on the phylogenetic relationships within marine, burrowing shrimp-like or lobster-like crustaceans this obscure, but taxonomically large, infraorder emerged. -
An Update on Reproduction in Ghost Shrimps (Decapoda: Axiidea) and Mud Lobsters… 233
DOI: 10.5772/intechopen.75067 Provisional chapter Chapter 11 An Update onon Reproduction Reproduction in in Ghost Ghost Shrimps Shrimps (Decapoda: Axiidea) and Mud Lobsters (Decapoda: (Decapoda: Axiidea) and Mud Lobsters (Decapoda: Gebiidea) Gebiidea) Patricio Hernáez Patricio Hernáez Additional information is available at the end of the chapter Additional information is available at the end of the chapter http://dx.doi.org/10.5772/intechopen.75067 Abstract In this report, I review the taxonomic history, body adaptations, ecology, and reproduc- tion of the infraorders Axiidea (ghost shrimps) and Gebiidea (mud lobsters). Known until recently as the “Thalassinidea,” modern classification divided Axiidea into six families and Gebiidea into five. Ghost shrimps are characterized by having the first and second pereiopod chelate and a soft and delicate body, whereas mud lobsters possess the first pereiopod chelate or subchelate and second pereiopod subchelate or simple with a hard and heavily calcified body. Among the main body adaptations of these organisms are distinguished: (i) carapace laterally compressed, (ii) pleon longer than the cephalotho- rax in ghost shrimps but usually shorter in mud lobsters, and (iii) anterior feet thrown directly forward. Current accounting of axiideans and gebiideans reaches around 781 and 240 extant species, respectively, with major number of species in Callianassidae and Upogebiidae within of each clade. Male reproductive system involves paired testes linked to the vas deferens that open in gonopores on the ventral coxal segment of the fifth pereiopod. In females, the reproductive system is composed of paired and colored ova- ries, one ovary shorter than another, and a pair of short and translucent oviducts linking each ovary to the gonopore, this latter located on the ventral coxal of the third pereiopod.