Appendix IV Freshwater Fish Species by Priority Area
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Preserving the Tree of Life of the Fish Family Cyprinidae in Africa in the Face of the Ongoing Extinction Crisis
Genome Preserving the tree of life of the fish family Cyprinidae in Africa in the face of the ongoing extinction crisis Journal: Genome Manuscript ID gen-2018-0023.R3 Manuscript Type: Article Date Submitted by the 02-Mar-2019 Author: Complete List of Authors: Adeoba, Mariam; University of Johannesburg Tesfamichael, Solomon; University of Johannesburg Yessoufou, Kowiyou; University of Johannesburg Conservation, African freshwater Ecosystems, IUCN Red List, EDGE, DNA Keyword: Draft barcoding Is the invited manuscript for consideration in a Special 7th International Barcode of Life Issue? : https://mc06.manuscriptcentral.com/genome-pubs Page 1 of 42 Genome Preserving the tree of life of the fish family Cyprinidae in Africa in the face of the ongoing extinction crisis Mariam Salami1, Solomon Tesfamichael2, Kowiyou Yessoufou2 1Department of Zoology, University of Johannesburg, Kingsway Campus, PO Box 524, Auckland Park 2006, South Africa 2Department of Geography, Environmental Management and Energy studies, University of Johannesburg, Kingsway Campus, PO Box 524, Auckland Park 2006, South Africa *Corresponding author: Kowiyou Yessoufou [email protected] Draft 1 https://mc06.manuscriptcentral.com/genome-pubs Genome Page 2 of 42 Abstract Our understanding of how the phylogenetic tree of fishes might be affected by the ongoing extinction risk is poor. This is due to the unavailability of comprehensive DNA data, especially for many African lineages. In addition, the ongoing taxonomic confusion within some lineages, e.g. Cyprinidae, makes it difficult to contribute to the debate on how the fish tree of life might be shaped by extinction. Here, we combine COI sequences and taxonomic information to assemble a fully sampled phylogeny of the African Cyprinidae and investigate whether we might lose more phylogenetic diversity (PD) than expected if currently-threatened species go extinct. -
Reproductive Behavior, Development and Eye Regression in the Cave
Neotropical Ichthyology, 7(3):479-490, 2009 Copyright © 2009 Sociedade Brasileira de Ictiologia Reproductive behavior, development and eye regression in the cave armored catfish, Ancistrus cryptophthalmus Reis, 1987 (Siluriformes: Loricariidae), breed in laboratory Sandro Secutti and Eleonora Trajano The troglobitic armored catfish, Ancistrus cryptophthalmus (Loricariidae, Ancistrinae) is known from four caves in the São Domingos karst area, upper rio Tocantins basin, Central Brazil. These populations differ in general body shape and degree of reduction of eyes and of pigmentation. The small Passa Três population (around 1,000 individuals) presents the most reduced eyes, which are not externally visible in adults. A small group of Passa Três catfish, one male and three females, reproduced spontaneously thrice in laboratory, at the end of summertime in 2000, 2003 and 2004. Herein we describe the reproductive behavior during the 2003 event, as well as the early development of the 2003 and 2004 offsprings, with focus on body growth and ontogenetic regression of eyes. The parental care by the male, which includes defense of the rock shelter where the egg clutch is laid, cleaning and oxygenation of eggs, is typical of many loricariids. On the other hand, the slow development, including delayed eye degeneration, low body growth rates and high estimated longevity (15 years or more) are characteristic of precocial, or K-selected, life cycles. In the absence of comparable data for close epigean relatives (Ancistrus spp.), it is not possible to establish whether these features are an autapomorphic specialization of the troglobitic A. cryptophthalmus or a plesiomorphic trait already present in the epigean ancestor, possibly favoring the adoption of the life in the food-poor cave environment. -
Checklist of Fish and Invertebrates Listed in the CITES Appendices
JOINTS NATURE \=^ CONSERVATION COMMITTEE Checklist of fish and mvertebrates Usted in the CITES appendices JNCC REPORT (SSN0963-«OStl JOINT NATURE CONSERVATION COMMITTEE Report distribution Report Number: No. 238 Contract Number/JNCC project number: F7 1-12-332 Date received: 9 June 1995 Report tide: Checklist of fish and invertebrates listed in the CITES appendices Contract tide: Revised Checklists of CITES species database Contractor: World Conservation Monitoring Centre 219 Huntingdon Road, Cambridge, CB3 ODL Comments: A further fish and invertebrate edition in the Checklist series begun by NCC in 1979, revised and brought up to date with current CITES listings Restrictions: Distribution: JNCC report collection 2 copies Nature Conservancy Council for England, HQ, Library 1 copy Scottish Natural Heritage, HQ, Library 1 copy Countryside Council for Wales, HQ, Library 1 copy A T Smail, Copyright Libraries Agent, 100 Euston Road, London, NWl 2HQ 5 copies British Library, Legal Deposit Office, Boston Spa, Wetherby, West Yorkshire, LS23 7BQ 1 copy Chadwick-Healey Ltd, Cambridge Place, Cambridge, CB2 INR 1 copy BIOSIS UK, Garforth House, 54 Michlegate, York, YOl ILF 1 copy CITES Management and Scientific Authorities of EC Member States total 30 copies CITES Authorities, UK Dependencies total 13 copies CITES Secretariat 5 copies CITES Animals Committee chairman 1 copy European Commission DG Xl/D/2 1 copy World Conservation Monitoring Centre 20 copies TRAFFIC International 5 copies Animal Quarantine Station, Heathrow 1 copy Department of the Environment (GWD) 5 copies Foreign & Commonwealth Office (ESED) 1 copy HM Customs & Excise 3 copies M Bradley Taylor (ACPO) 1 copy ^\(\\ Joint Nature Conservation Committee Report No. -
Phylogenetic Relationships Within the Speciose Family Characidae
Oliveira et al. BMC Evolutionary Biology 2011, 11:275 http://www.biomedcentral.com/1471-2148/11/275 RESEARCH ARTICLE Open Access Phylogenetic relationships within the speciose family Characidae (Teleostei: Ostariophysi: Characiformes) based on multilocus analysis and extensive ingroup sampling Claudio Oliveira1*, Gleisy S Avelino1, Kelly T Abe1, Tatiane C Mariguela1, Ricardo C Benine1, Guillermo Ortí2, Richard P Vari3 and Ricardo M Corrêa e Castro4 Abstract Background: With nearly 1,100 species, the fish family Characidae represents more than half of the species of Characiformes, and is a key component of Neotropical freshwater ecosystems. The composition, phylogeny, and classification of Characidae is currently uncertain, despite significant efforts based on analysis of morphological and molecular data. No consensus about the monophyly of this group or its position within the order Characiformes has been reached, challenged by the fact that many key studies to date have non-overlapping taxonomic representation and focus only on subsets of this diversity. Results: In the present study we propose a new definition of the family Characidae and a hypothesis of relationships for the Characiformes based on phylogenetic analysis of DNA sequences of two mitochondrial and three nuclear genes (4,680 base pairs). The sequences were obtained from 211 samples representing 166 genera distributed among all 18 recognized families in the order Characiformes, all 14 recognized subfamilies in the Characidae, plus 56 of the genera so far considered incertae sedis in the Characidae. The phylogeny obtained is robust, with most lineages significantly supported by posterior probabilities in Bayesian analysis, and high bootstrap values from maximum likelihood and parsimony analyses. -
Fish, Various Invertebrates
Zambezi Basin Wetlands Volume II : Chapters 7 - 11 - Contents i Back to links page CONTENTS VOLUME II Technical Reviews Page CHAPTER 7 : FRESHWATER FISHES .............................. 393 7.1 Introduction .................................................................... 393 7.2 The origin and zoogeography of Zambezian fishes ....... 393 7.3 Ichthyological regions of the Zambezi .......................... 404 7.4 Threats to biodiversity ................................................... 416 7.5 Wetlands of special interest .......................................... 432 7.6 Conservation and future directions ............................... 440 7.7 References ..................................................................... 443 TABLE 7.2: The fishes of the Zambezi River system .............. 449 APPENDIX 7.1 : Zambezi Delta Survey .................................. 461 CHAPTER 8 : FRESHWATER MOLLUSCS ................... 487 8.1 Introduction ................................................................. 487 8.2 Literature review ......................................................... 488 8.3 The Zambezi River basin ............................................ 489 8.4 The Molluscan fauna .................................................. 491 8.5 Biogeography ............................................................... 508 8.6 Biomphalaria, Bulinis and Schistosomiasis ................ 515 8.7 Conservation ................................................................ 516 8.8 Further investigations ................................................. -
AN ECOLOGICAL and SYSTEMATIC SURVEY of FISHES in the RAPIDS of the LOWER ZA.Fre OR CONGO RIVER
AN ECOLOGICAL AND SYSTEMATIC SURVEY OF FISHES IN THE RAPIDS OF THE LOWER ZA.fRE OR CONGO RIVER TYSON R. ROBERTS1 and DONALD J. STEWART2 CONTENTS the rapids habitats, and the adaptations and mode of reproduction of the fishes discussed. Abstract ______________ ----------------------------------------------- 239 Nineteen new species are described from the Acknowledgments ----------------------------------- 240 Lower Zaire rapids, belonging to the genera Introduction _______________________________________________ 240 Mormyrus, Alestes, Labeo, Bagrus, Chrysichthys, Limnology ---------------------------------------------------------- 242 Notoglanidium, Gymnallabes, Chiloglanis, Lampro Collecting Methods and Localities __________________ 244 logus, Nanochromis, Steatocranus, Teleogramma, Tabulation of species ---------------------------------------- 249 and Mastacembelus, most of them with obvious Systematics -------------------------------------------------------- 249 modifications for life in the rapids. Caecomasta Campylomormyrus _______________ 255 cembelus is placed in the synonymy of Mastacem M ormyrus ____ --------------------------------- _______________ 268 belus, and morphologically intermediate hybrids Alestes __________________ _________________ 270 reported between blind, depigmented Mastacem Bryconaethiops -------------------------------------------- 271 belus brichardi and normally eyed, darkly pig Labeo ---------------------------------------------------- _______ 274 mented M astacembelus brachyrhinus. The genera Bagrus -
Clarias Gariepinus (Burchell, 1822)
Food and Agriculture Organization of the United Nations Fisheries and for a world without hunger Aquaculture Department Cultured Aquatic Species Information Programme Clarias gariepinus (Burchell, 1822) I. Identity V. Status And Trends a. Biological Features VI. Main Issues b. Images Gallery a. Responsible Aquaculture Practices II. Profile VII. References a. Historical Background a. Related Links b. Main Producer Countries c. Habitat And Biology III. Production a. Production Cycle b. Production Systems c. Diseases And Control Measures IV. Statistics a. Production Statistics b. Market And Trade Identity Clarias gariepinus Burchell, 1822 [Clariidae] FAO Names: En - North African catfish, Fr - Poisson-chat nord-africain, Es - Pez-gato Biological features Body elongate. Head large, depressed and bony with small eyes. Narrow and angular occipital process; gill openings wide; air-breathing labyrinthic organ arising from gill arches; first gill arch with 24 to 110 gillrakers; cleithrum pointed, narrow with longitudinal ridges and with sharpness. Mouth terminal, large. Four pairs of barbels present. Long dorsal and anal fins; without dorsal fin spine and adipose fin. Anterior edge of pectoral spine serrated. Caudal fin rounded. Colour varies from sandy-yellow through gray to olive with dark greenish-brown markings, belly white. View FAO FishFinder Species fact sheet Images gallery FAO Fisheries and Aquaculture Department 2.5 kg Clarias gariepinus Nursing semi-intensive pond Clarias fry nursing tank Clarias intensive nursing (Photo: John Moehl) Clarias intensive farming Clarias harvest in Cameroon Profile Historical background African catfish are mentioned within traditional capture-based aquaculture (known as wheddos in Benin and Ghana and barochois in Mauritius) for centuries. Their culture in modern times follows a similar trend to that of tilapias: first domestication trials by the year 1950 and adoption of the North African catfish Clarias gariepinus as the most desirable catfish for aquaculture in the mid 1970s. -
A Guide to the Parasites of African Freshwater Fishes
A Guide to the Parasites of African Freshwater Fishes Edited by T. Scholz, M.P.M. Vanhove, N. Smit, Z. Jayasundera & M. Gelnar Volume 18 (2018) Chapter 2.1. FISH DIVERSITY AND ECOLOGY Martin REICHARD Diversity of fshes in Africa Fishes are the most taxonomically diverse group of vertebrates and Africa shares a large portion of this diversity. This is due to its rich geological history – being a part of Gondwana, it shares taxa with the Neotropical region, whereas recent close geographical affnity to Eurasia permitted faunal exchange with European and Asian taxa. At the same time, relative isolation and the complex climatic and geological history of Africa enabled major diversifcation within the continent. The taxonomic diversity of African freshwater fshes is associated with functional and ecological diversity. While freshwater habitats form a tiny fraction of the total surface of aquatic habitats compared with the marine environment, most teleost fsh diversity occurs in fresh waters. There are over 3,200 freshwater fsh species in Africa and it is likely several hundreds of species remain undescribed (Snoeks et al. 2011). This high diversity and endemism is likely mirrored in diversity and endemism of their parasites. African fsh diversity includes an ancient group of air-breathing lungfshes (Protopterus spp.). Other taxa are capable of breathing air and tolerate poor water quality, including several clariid catfshes (e.g., Clarias spp.; Fig. 2.1.1D) and anabantids (Ctenopoma spp.). Africa is also home to several bichir species (Polypterus spp.; Fig. 2.1.1A), an ancient fsh group endemic to Africa, and bonytongue Heterotis niloticus (Cuvier, 1829) (Osteoglossidae), a basal actinopterygian fsh. -
Diversity and Risk Patterns of Freshwater Megafauna: a Global Perspective
Diversity and risk patterns of freshwater megafauna: A global perspective Inaugural-Dissertation to obtain the academic degree Doctor of Philosophy (Ph.D.) in River Science Submitted to the Department of Biology, Chemistry and Pharmacy of Freie Universität Berlin By FENGZHI HE 2019 This thesis work was conducted between October 2015 and April 2019, under the supervision of Dr. Sonja C. Jähnig (Leibniz-Institute of Freshwater Ecology and Inland Fisheries), Jun.-Prof. Dr. Christiane Zarfl (Eberhard Karls Universität Tübingen), Dr. Alex Henshaw (Queen Mary University of London) and Prof. Dr. Klement Tockner (Freie Universität Berlin and Leibniz-Institute of Freshwater Ecology and Inland Fisheries). The work was carried out at Leibniz-Institute of Freshwater Ecology and Inland Fisheries, Germany, Freie Universität Berlin, Germany and Queen Mary University of London, UK. 1st Reviewer: Dr. Sonja C. Jähnig 2nd Reviewer: Prof. Dr. Klement Tockner Date of defense: 27.06. 2019 The SMART Joint Doctorate Programme Research for this thesis was conducted with the support of the Erasmus Mundus Programme, within the framework of the Erasmus Mundus Joint Doctorate (EMJD) SMART (Science for MAnagement of Rivers and their Tidal systems). EMJDs aim to foster cooperation between higher education institutions and academic staff in Europe and third countries with a view to creating centres of excellence and providing a highly skilled 21st century workforce enabled to lead social, cultural and economic developments. All EMJDs involve mandatory mobility between the universities in the consortia and lead to the award of recognised joint, double or multiple degrees. The SMART programme represents a collaboration among the University of Trento, Queen Mary University of London and Freie Universität Berlin. -
Global Catfish Biodiversity 17
American Fisheries Society Symposium 77:15–37, 2011 © 2011 by the American Fisheries Society Global Catfi sh Biodiversity JONATHAN W. ARMBRUSTER* Department of Biological Sciences, Auburn University 331 Funchess, Auburn University, Alabama 36849, USA Abstract.—Catfi shes are a broadly distributed order of freshwater fi shes with 3,407 cur- rently valid species. In this paper, I review the different clades of catfi shes, all catfi sh fami- lies, and provide information on some of the more interesting aspects of catfi sh biology that express the great diversity that is present in the order. I also discuss the results of the widely successful All Catfi sh Species Inventory Project. Introduction proximately 10.8% of all fi shes and 5.5% of all ver- tebrates are catfi shes. Renowned herpetologist and ecologist Archie Carr’s But would every one be able to identify the 1941 parody of dichotomous keys, A Subjective Key loricariid catfi sh Pseudancistrus pectegenitor as a to the Fishes of Alachua County, Florida, begins catfi sh (Figure 2A)? It does not have scales, but it with “Any damn fool knows a catfi sh.” Carr is right does have bony plates. It is very fl at, and its mouth but only in part. Catfi shes (the Siluriformes) occur has long jaws but could not be called large. There is on every continent (even fossils are known from a barbel, but you might not recognize it as one as it Antarctica; Figure 1); and the order is extremely is just a small extension of the lip. There are spines well supported by numerous complex synapomor- at the front of the dorsal and pectoral fi ns, but they phies (shared, derived characteristics; Fink and are not sharp like in the typical catfi sh. -
African Sharptooth Catfish Clarias Gariepinus
African sharptooth catfish Clarias gariepinus 1 Taxonomy Species: Clarias gariepinus (Burchell, 1822) Family: Clariidae Order: Siluriformes Class: Actinopterygii African sharptooth catfish Clarias gariepinus is a typical air-breathing catfish with a scaleless, bony elongated body with long dorsal and anal fins, and a helmet like head (Figure 1). Colour varies dorsally from dark to light brown and is often mottled with shades of olive and grey while the underside is a pale cream to white (Skelton 2001). It can grow very large with a maximum reported length of 170 cm (IGFA 2001) and weight of 60 kg (Robbins et al. 1991). Figure 1. Lateral view of Clarias gariepinus (Source: FAO 2012). The genus Clarias was reviewed in the 1980s, which resulted in several widespread species being synonymized (Clarias capensis of southern Africa, C. mossambicus of central Africa and C. lazera of west and north Africa) under the name Clarias gariepinus (Teugels 1986). 2 Natural distribution and habitat The native range of C. gariepinus covers most of the African continent, with the exception of Maghreb, Upper and Lower Guinea, and the Cape provinces of South Africa (Picker & Griffiths 2011) (Figure 2). According to Skelton (2001) it is probably the most widely distributed fish in Africa. Jubb (1967) describes its natural distribution as occurring as far south as the Orange River system in the west and the Umtamvuna River in the east of South Africa. Page | 1 C. gariepinus is widely tolerant of many different habitats, even the upper reaches of estuaries, but is considered to be a freshwater species. It favours floodplains, slow flowing rivers, lakes and dams (Skelton 2001). -
Out of Lake Tanganyika: Endemic Lake Fishes Inhabit Rapids of the Lukuga River
355 Ichthyol. Explor. Freshwaters, Vol. 22, No. 4, pp. 355-376, 5 figs., 3 tabs., December 2011 © 2011 by Verlag Dr. Friedrich Pfeil, München, Germany – ISSN 0936-9902 Out of Lake Tanganyika: endemic lake fishes inhabit rapids of the Lukuga River Sven O. Kullander* and Tyson R. Roberts** The Lukuga River is a large permanent river intermittently serving as the only effluent of Lake Tanganyika. For at least the first one hundred km its water is almost pure lake water. Seventy-seven species of fish were collected from six localities along the Lukuga River. Species of cichlids, cyprinids, and clupeids otherwise known only from Lake Tanganyika were identified from rapids in the Lukuga River at Niemba, 100 km from the lake, whereas downstream localities represent a Congo River fish fauna. Cichlid species from Niemba include special- ized algal browsers that also occur in the lake (Simochromis babaulti, S. diagramma) and one invertebrate picker representing a new species of a genus (Tanganicodus) otherwise only known from the lake. Other fish species from Niemba include an abundant species of clupeid, Stolothrissa tanganicae, otherwise only known from Lake Tangan- yika that has a pelagic mode of life in the lake. These species demonstrate that their adaptations are not neces- sarily dependent upon the lake habitat. Other endemic taxa occurring at Niemba are known to frequent vegetat- ed shore habitats or river mouths similar to the conditions at the entrance of the Lukuga, viz. Chelaethiops minutus (Cyprinidae), Lates mariae (Latidae), Mastacembelus cunningtoni (Mastacembelidae), Astatotilapia burtoni, Ctenochromis horei, Telmatochromis dhonti, and Tylochromis polylepis (Cichlidae). The Lukuga frequently did not serve as an ef- fluent due to weed masses and sand bars building up at the exit, and low water levels of Lake Tanganyika.