YB-1 Stress-Response Protein Conformation Implicated in Post-Transcriptional

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YB-1 Stress-Response Protein Conformation Implicated in Post-Transcriptional YB-1 Stress-Response Protein Conformation Implicated in Post-transcriptional Control of Myofibroblast Differentiation DISSERTATION Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of The Ohio State University By William L. Willis Graduate Program in Biomedical Science The Ohio State University 2013 Dissertation Committee: Arthur R. Strauch, Ph.D., Advisor Denis C. Guttridge, Ph.D. Lai-Chu Wu, Ph.D. Mark T. Ziolo, Ph.D. Copyright by William L. Willis 2013 Abstract Differentiation of stromal fibroblasts into myofibroblasts is critical for wound healing and tissue repair. Normally a transient process, chronic myofibroblast activation is the leading cause of hypertrophic scarring, loss of tissue compliance, and dysfunctional tissue remodeling. Vascular smooth muscle α-actin (SMαA) is an indicator of myofibroblast differentiation, as well as one of several fetal contractile protein isoforms re-expressed in adult cardiomyocytes in response to mechanical stress-injury. The stress- response protein, Y-box binding protein-1 (YB-1) binds SMαA mRNA and regulates its translational activity. Our central hypothesis is that YB-1 drives maladaptive SMαA expression in injury-activated myofibroblasts by modulating the packaging, delivery, and translational efficiency of its cognate mRNA. In a mouse model for cardiac fibrosis, we observed that accumulation of fetal SMαA protein in cardiac sarcomeres was associated with accumulation of punctate YB-1 deposits which localized to perinuclear regions as well as polyribosome-enriched cytosol proximal to cardiac intercalated discs. Samples from both fibrotic mouse hearts as well as SMαA positive endomyocardial biopsies from human heart transplant patients were enriched with high molecular weight, heat- denaturing resistant YB-1 oligomers migrating in the range of 100-250 kDa during reducing SDS-PAGE. Notably, YB-1 oligomers exhibited selective affinity for an exon- ii 3 derived translation silencer sequence in SMαA mRNA. Presence of p180 YB-1 oligomers in endomyocardial biopsies increased with SMαA protein expression and graft age, suggesting that in addition to monomeric YB-1 p50, p180 oligomers may be a preferred YB-1 size variant for storing/protecting fetal mRNA transcripts during myocardial remodeling. Based on these intriguing observations, which suggested that YB-1 oligomer formation may be associated with the packaging and translation control of SMαA mRNA, we examined the regulatory aspects of YB-1 oligomerization using a model system based on isolated human pulmonary fibroblasts. Activation of SMαA gene expression in human pulmonary myofibroblasts by TGF1 was associated with formation of denaturation- resistant YB-1 oligomers with selective affinity for the SMαA exon-3 translation-silencer sequence. We discovered that YB-1 is a substrate for the protein-crosslinking enzyme transglutaminase 2 (TG2) that catalyzes calcium-dependent formation of covalent - glutamyl-isopeptide linkages in response to reactive oxygen signaling. TG2 transamidation reaction studies using intact cells, cell lysates, and recombinant YB-1 revealed covalent crosslinking of the 50 kDa YB-1 polypeptide into protein oligomers that were distributed during SDS-PAGE over a 75 kDa to 250 kDa size range. In vitro YB-1 transamidation required nanomolar levels of calcium and was enhanced by the presence of SMαA mRNA. YB-1 crosslinking was inhibited by (a) anti-oxidant cystamine, (b) the reactive-oxygen antagonist, diphenyleneiodonium, (c) competitive inhibition of TG2 transamidation using the aminyl-surrogate substrate, iii monodansylcadaverine, and (d) transfection with small-interfering RNA specific for human TG2 mRNA. YB-1 crosslinking was partially reversible as a function of free- calcium concentration and TG2 enzyme availability. Metabolic stress incurred during tissue injury may also promote conversion of resident fibroblasts to the myofibroblast phenotype, as temporary loss of tissue perfusion promotes a hypoxic, energy-deficient pro-oxidative cellular microenvironment. Stimulation of AMPK activity with AICAR activated TG2 transamidation and induced the formation of high molecular weight YB-1 oligomers with enhanced affinity for the SMαA mRNA exon-3 translation-silencer sequence. We found that AMPK and peroxide differentially regulated phosphorylation of the YB-1 cold-shock domain, which modulates YB-1 subcellular localization and SMαA mRNA binding efficiency. AICAR suppressed YB-1 phosphorylation, which prevented nuclear translocation and activated SMαA mRNA binding. In contrast, peroxide stimulation activated Erk/MAPK dependent phosphorylation of the YB-1 cold-shock domain and caused the dispersal of YB-1: SMαA mRNA complexes. Thus, we propose that coordinated early AMPK activation and delayed ROS production during myofibroblast differentiation regulates SMαA expression at the post-transcriptional level, by coordinating the respective packaging and deployment/translation activation of SMαA mRNA from YB-1 ribonucleoprotein complexes. In summary, intracellular calcium accumulation and increased ROS levels incurred during metabolic and biomechanical stress may govern SMαA mRNA iv translational activity during wound healing and cardiopulmonary stress responses via TG2-mediated crosslinking of the YB-1 mRNA-binding protein. v Dedicated to my parents, Pamela and William L. Willis vi Acknowledgments I would like to thank my advisor, Dr. Arthur Strauch, for the opportunity to join his lab. His guidance, insight, and scientific expertise have been invaluable throughout my graduate career, and have greatly contributed to my development as a scientist. I would also like Dr. Lai-Chu Wu for her guidance and expertise during early rotations in her lab. Her guidance, training, and advice during those early days laid foundation for the work I have completed in this dissertation. I would to thank Dr. Denis Guttridge, Dr. Lai-Chu Wu, and Dr. Mark Ziolo for their time serving on my committee and their helpful guidance along the way. Special thanks to Dr. Jason David in the Art Strauch lab who kindly provided training in YB-1 immunoblots and RNA pull-down techniques as well as sharing some data shown in the dissertation that supported the YB-1 oligomerization hypothesis during the early, formative stages of my work. Finally I would like to express my sincerest gratitude to my parents, for the encouragement to continue. vii Vita June 20, 1978 .............................................. Born- W. Palm Beach, FL 2004 ............................................................ B.Sc. Chemistry, The Ohio State University 2006-2008 .................................................. Graduate Research Associate The Ohio State University 2008-present ............................................... Graduate Research Associate, The Ohio State University (In the lab of Dr. Arthur Strauch) Publications 1. Eiring, AM, Neviani P, Santhanam R, Oaks JJ, Chang JS, Notari M, Willis WL, Gambacorti-Passerini C, Violinia S, Marcucci G, Caligiuri MA, Leone GW, Perrotti D. Identification of novel post-transcriptional targets of the BCR/ABL oncoprotein by ribonomics: requirement of E2F3 for BCR/ABL leukemogenesis. Blood 2008 Jan 15;111(2)816-28 2. Hutzen,B.; Willis,WL., Jones,S., Cen,L., Deangelis,S., Fuh,B., Lin,J. Dietary agent, benzyl isothiocyanate inhibits signal transducer and activator of transcription 3 phosphorylation and collaborates with sulforaphane in the growth suppression of PANC-1 cancer cells. Cancer Cell International 2009 Aug 27;9:24 3. Canner,JA., Sobo,M., Ball,S.; Hutzen,B., DeAngelis,S., Willis,WL., Studebaker,A.W., Ding,K., Wang,S.; Yang,D., Lin,J. MI-63: a novel small- molecule inhibitor targets MDM2 and induces apoptosis in embryonal and alveolar rhabdomyosarcoma cells with wild-type p53. British Journal of Cancer 2009 Sep 1;101(5): 774–781 viii 4. David, D.A. Subramanian, S.V, Zhang, A. Willis, WL, Kelm, RJ, Leir, CV, Strauch, AR. Y-Box binding protein-1 implicated in translational control of fetal myocardial gene expression after cardiac transplant. Experimental Biology and Medicine 2012 May1; 237(5): 593-607 5. Willis, WL, Seethalakshmi Hariharan, Jason J. David, Arthur Strauch. Transglutaminase-2 Mediates Calcium-Regulated Crosslinking of the Y-Box 1 (YB-1) Translation-Regulatory Protein in TGFβ1-Activated Myofibroblasts. Journal of Cellular Biochemistry [published online ahead of print June 27, 2013] Fields of Study Major Field: Biomedical Sciences Graduate Program ix Table of Contents Abstract .......................................................................................................................... ii Acknowledgments ........................................................................................................ vii Vita ............................................................................................................................. viii List of Tables................................................................................................................ xii List of Figures ............................................................................................................. xiii Chapter 1: Introduction ....................................................................................................1 Chapter 2: Covalent YB-1 oligomerization is associated with post-transplant cardiac remodeling and fetal smooth muscle α-actin gene reactivation .........................................5 2.1 Introduction ...........................................................................................................5
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