The Philosophical and Historical Roots of Evolutionary Tree Diagrams
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John Hill (1714?–1775) on 'Plant Sleep'
Annals of Science ISSN: (Print) (Online) Journal homepage: https://www.tandfonline.com/loi/tasc20 John Hill (1714?–1775) on ‘Plant Sleep’: experimental physiology and the limits of comparative analysis Justin Begley To cite this article: Justin Begley (2020): John Hill (1714?–1775) on ‘Plant Sleep’: experimental physiology and the limits of comparative analysis, Annals of Science, DOI: 10.1080/00033790.2020.1813807 To link to this article: https://doi.org/10.1080/00033790.2020.1813807 © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group Published online: 12 Sep 2020. Submit your article to this journal View related articles View Crossmark data Full Terms & Conditions of access and use can be found at https://www.tandfonline.com/action/journalInformation?journalCode=tasc20 ANNALS OF SCIENCE https://doi.org/10.1080/00033790.2020.1813807 John Hill (1714?–1775) on ‘Plant Sleep’: experimental physiology and the limits of comparative analysis Justin Begley Department of Philosophy, History, and Art, University of Helsinki, Helsinki, Finland ABSTRACT ARTICLE HISTORY The phenomenon of ‘plant sleep’–whereby vegetables Received 1 October 2019 rhythmically open and close their leaves or petals in Accepted 18 August 2020 daily cycles – has been a continual source of fascination KEYWORDS for those with botanical interests, from the Portuguese Royal Society; history of physician Cristóbal Acosta and the Italian naturalist botany; John Hill; Prospero Alpini in the sixteenth century to Percy Bysshe experimentation; natural Shelley and Charles Darwin in the nineteenth. But it was history in 1757 that the topic received its earliest systemic treatment on English shores with the prodigious author, botanist, actor, and Royal Society critic John Hill’s The Sleep of Plants, and Cause of Motion in the Sensitive Plant. -
Foucault's Darwinian Genealogy
genealogy Article Foucault’s Darwinian Genealogy Marco Solinas Political Philosophy, University of Florence and Deutsches Institut Florenz, Via dei Pecori 1, 50123 Florence, Italy; [email protected] Academic Editor: Philip Kretsedemas Received: 10 March 2017; Accepted: 16 May 2017; Published: 23 May 2017 Abstract: This paper outlines Darwin’s theory of descent with modification in order to show that it is genealogical in a narrow sense, and that from this point of view, it can be understood as one of the basic models and sources—also indirectly via Nietzsche—of Foucault’s conception of genealogy. Therefore, this essay aims to overcome the impression of a strong opposition to Darwin that arises from Foucault’s critique of the “evolutionistic” research of “origin”—understood as Ursprung and not as Entstehung. By highlighting Darwin’s interpretation of the principles of extinction, divergence of character, and of the many complex contingencies and slight modifications in the becoming of species, this essay shows how his genealogical framework demonstrates an affinity, even if only partially, with Foucault’s genealogy. Keywords: Darwin; Foucault; genealogy; natural genealogies; teleology; evolution; extinction; origin; Entstehung; rudimentary organs “Our classifications will come to be, as far as they can be so made, genealogies; and will then truly give what may be called the plan of creation. The rules for classifying will no doubt become simpler when we have a definite object in view. We possess no pedigrees or armorial bearings; and we have to discover and trace the many diverging lines of descent in our natural genealogies, by characters of any kind which have long been inherited. -
Synthesis of Phylogeny and Taxonomy Into a Comprehensive Tree of Life
Synthesis of phylogeny and taxonomy into a comprehensive tree of life Cody E. Hinchliffa,1, Stephen A. Smitha,1,2, James F. Allmanb, J. Gordon Burleighc, Ruchi Chaudharyc, Lyndon M. Coghilld, Keith A. Crandalle, Jiabin Dengc, Bryan T. Drewf, Romina Gazisg, Karl Gudeh, David S. Hibbettg, Laura A. Katzi, H. Dail Laughinghouse IVi, Emily Jane McTavishj, Peter E. Midfordd, Christopher L. Owenc, Richard H. Reed, Jonathan A. Reesk, Douglas E. Soltisc,l, Tiffani Williamsm, and Karen A. Cranstonk,2 aEcology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109; bInterrobang Corporation, Wake Forest, NC 27587; cDepartment of Biology, University of Florida, Gainesville, FL 32611; dField Museum of Natural History, Chicago, IL 60605; eComputational Biology Institute, George Washington University, Ashburn, VA 20147; fDepartment of Biology, University of Nebraska-Kearney, Kearney, NE 68849; gDepartment of Biology, Clark University, Worcester, MA 01610; hSchool of Journalism, Michigan State University, East Lansing, MI 48824; iBiological Science, Clark Science Center, Smith College, Northampton, MA 01063; jDepartment of Ecology and Evolutionary Biology, University of Kansas, Lawrence, KS 66045; kNational Evolutionary Synthesis Center, Duke University, Durham, NC 27705; lFlorida Museum of Natural History, University of Florida, Gainesville, FL 32611; and mComputer Science and Engineering, Texas A&M University, College Station, TX 77843 Edited by David M. Hillis, The University of Texas at Austin, Austin, TX, and approved July 28, 2015 (received for review December 3, 2014) Reconstructing the phylogenetic relationships that unite all line- published phylogenies are available only as journal figures, rather ages (the tree of life) is a grand challenge. The paucity of homologous than in electronic formats that can be integrated into databases and character data across disparately related lineages currently renders synthesis methods (7–9). -
Leibniz on Whether the World Increases in Perfection
LEIBNIZ ON WHETHER THE WORLD INCREASES IN PERFECTION Lloyd Strickland In a letter to Bourguet written on 5 August 1715, a little over a year before his death, Leibniz suggests that, on the question of the world’s perfection, ‘Two hypotheses can be formed – one that nature is equally perfect, the other that it always increases in perfection.’ (L664)1 He then proceeds to split the second option into two further 1 The abbreviations I use throughout when citing Leibniz are as follows: A = Sämtliche schriften und briefe, ed by Akademie der Wissenschaften, multiple volumes in 6 series, cited by series (reihe) and volume (band) (Berlin, 1923-). AG = Philosophical essays, trans & ed by Roger Ariew & Daniel Garber (Indianapolis, 1989). D = De summa rerum, trans by G. H. R. Parkinson (New Haven, 1992). DM = Discourse on metaphysics, cited by section number, various translations in AG, L, P, W etc. Dn = The philosophical works of Leibnitz, trans & ed George Martin Duncan (New Haven, 1908). E = Opera Philosophica, ed by J. E. Erdmann (Berlin, 1840). G = Die philosophiscen Schriften von Gottfried Wilhelm Leibniz, ed by C. I. Gerhardt, 7 vols (Berlin, 1875-1890). GM = G. W. Leibniz: Mathematische Schriften, ed by C. I. Gerhardt, 7 vols (Berlin, 1962). Gr = Textes inédits, ed by Gaston Grua, 2 vols with successive pagination (Paris, 1948). H = Theodicy, trans by E. M. Huggard (Chicago, 1990). L = Philosophical papers and letters, trans & ed Leroy E. Loemker (Dordrecht, 2ed 1969). Mon = Monadology, cited by section number, various translations in AG, L, P, W etc. NE = New essays concerning human understanding, trans & ed by Peter Remnant & Jonathan Bennett (Cambridge, 1996). -
Bibliography on Medieval Logic: General Works a - K
Bibliography on Medieval Logic: General Works A - K https://www.historyoflogic.com/biblio/logic-medieval-biblio.htm History of Logic from Aristotle to Gödel by Raul Corazzon | e-mail: [email protected] Selected Bibliography on Medieval Logic: General Studies. (First Part: A - K) BIBLIOGRAPHY 1. Amerini, Fabrizio. 2000. "La Dottrina Della Significatio Di Francesco Da Prato O.P. (Xiv Secolo). Una Critica Tomista a Guglielmo Di Ockham." Documenti e Studi sulla Tradizione Filosofica Medievale no. XI:375-408. 2. Angelelli, Ignacio. 1993. "Augustinus Triumphus' Alleged Destructio of the Porphyrian Tree." In Argumentationstheorie. Scholastische Forschungen Zu Den Logischen Und Semantischen Regeln Korrekten Folgerns, edited by Jacobi, Klaus, 483-489. Leiden: Brill. 3. Bertagna, Mario. 2000. "La Dottrina Delle Conseguenze Nella "Logica" Di Pietro Da Mantova." Documenti e Studi sulla Tradizione Filosofica Medievale no. 11:459-496. 4. Beuchot, Mauricio. 1979. "La Filosofia Del Lenguaje De Pedro Hispano." Revista de Filosofia (Mexico) no. 12:215-230. 5. Boh, Ivan. 1964. "An Examination of Some Proofs in Burleigh's Propositional Logic." New Scholasticism no. 38:44-60. 6. ———. 1984. "Propositional Attitudes in the Logic of Walter Burley and William Ockham." Franciscan Studies:31-59. 7. ———. 1991. "Bradwardine's (?) Critique of Ockham's Modal Logic." In Historia Philosophiae Medii Aevi. Studien Zur Geschichte Der Philosophie Des Mittelalters. Festschrift Für Kurt Flasch Zu Seinem 60. Geburtstag. (Vol. I), edited by Mojsisch, Burkhard and Pluta, Olaf, 55-70. Amsterdam, Philadelphia: B. R. Grüner. 8. Braakhuis, Henk Antonius. 1977. "The Views of William of Sherwood on Some Semantical Topics and Their Relation to Those of Roger Bacon." Vivarium no. -
Staying Optimistic: the Trials and Tribulations of Leibnizian Optimism
Strickland, Lloyd 2019 Staying Optimistic: The Trials and Tribulations of Leibnizian Optimism. Journal of Modern Philosophy, 1(1): 3, pp. 1–21. DOI: https://doi.org/10.32881/jomp.3 RESEARCH Staying Optimistic: The Trials and Tribulations of Leibnizian Optimism Lloyd Strickland Manchester Metropolitan University, GB [email protected] The oft-told story of Leibniz’s doctrine of the best world, or optimism, is that it enjoyed a great deal of popularity in the eighteenth century until the massive earthquake that struck Lisbon on 1 November 1755 destroyed its support. Despite its long history, this story is nothing more than a commentators’ fiction that has become accepted wisdom not through sheer weight of evidence but through sheer frequency of repetition. In this paper we shall examine the reception of Leibniz’s doctrine of the best world in the eighteenth century in order to get a clearer understanding of what its fate really was. As we shall see, while Leibniz’s doctrine did win a good number of adherents in the 1720s and 1730s, especially in Germany, support for it had largely dried up by the mid-1740s; moreover, while opponents of Leibniz’s doctrine were few and far between in the 1710s and 1720s, they became increasing vocal in the 1730s and afterwards, between them producing an array of objections that served to make Leibnizian optimism both philosophically and theologically toxic years before the Lisbon earthquake struck. Keywords: Leibniz; Optimism; Best world; Lisbon earthquake; Evil; Wolff The oft-told story of Leibniz’s doctrine of the best world, or optimism, is that it enjoyed a great deal of popularity in the eighteenth century until the massive earthquake that struck Lisbon on 1 November 1755 destroyed its support. -
Ten Misunderstandings About Evolution a Very Brief Guide for the Curious and the Confused by Dr
Ten Misunderstandings About Evolution A Very Brief Guide for the Curious and the Confused By Dr. Mike Webster, Dept. of Neurobiology and Behavior, Cornell Lab of Ornithology, Cornell University ([email protected]); February 2010 The current debate over evolution and “intelligent design” (ID) is being driven by a relatively small group of individuals who object to the theory of evolution for religious reasons. The debate is fueled, though, by misunderstandings on the part of the American public about what evolutionary biology is and what it says. These misunderstandings are exploited by proponents of ID, intentionally or not, and are often echoed in the media. In this booklet I briefly outline and explain 10 of the most common (and serious) misunderstandings. It is impossible to treat each point thoroughly in this limited space; I encourage you to read further on these topics and also by visiting the websites given on the resource sheet. In addition, I am happy to send a somewhat expanded version of this booklet to anybody who is interested – just send me an email to ask for one! What are the misunderstandings? 1. Evolution is progressive improvement of species Evolution, particularly human evolution, is often pictured in textbooks as a string of organisms marching in single file from “simple” organisms (usually a single celled organism or a monkey) on one side of the page and advancing to “complex” organisms on the opposite side of the page (almost invariably a human being). We have all seen this enduring image and likely have some version of it burned into our brains. -
The Philosophical and Historical Roots of Evolutionary Tree Diagrams
Evo Edu Outreach (2011) 4:515–538 DOI 10.1007/s12052-011-0355-0 HISTORYAND PHILOSOPHY Depicting the Tree of Life: the Philosophical and Historical Roots of Evolutionary Tree Diagrams Nathalie Gontier Published online: 19 August 2011 # Springer Science+Business Media, LLC 2011 Abstract It is a popularly held view that Darwin was the were the result of this blend would, from the nineteenth first author to draw a phylogenetic tree diagram. However, century onward, also include the element of time. The as is the case with most popular beliefs, this one also does recognition of time would eventually lead to the recognition not hold true. Firstly, Darwin never called his diagram of of evolution as a fact of nature, and subsequently, tree common descent a tree. Secondly, even before Darwin, tree iconographies would come to represent exclusively the diagrams were used by a variety of philosophical, religious, evolutionary descent of species. and secular scholars to depict phenomena such as “logical relationships,”“affiliations,”“genealogical descent,”“af- Keywords Species classification . Evolutionary finity,” and “historical relatedness” between the elements iconography. Tree of life . Networks . Diagram . Phylogeny. portrayed on the tree. Moreover, historically, tree diagrams Genealogy. Pedigree . Stammbaum . Affinity. Natural themselves can be grouped into a larger class of diagrams selection that were drawn to depict natural and/or divine order in the world. In this paper, we trace the historical roots and cultural meanings of these tree diagrams. It will be Introduction demonstrated that tree diagrams as we know them are the outgrowth of ancient philosophical attempts to find the In this paper, we focus on the “why” of tree iconography. -
Darwin's “Tree of Life”
Icons of Evolution? Why Much of What Jonathan Wells Writes about Evolution is Wrong Alan D. Gishlick, National Center for Science Education DARWIN’S “TREE OF LIFE” mon descent. Finally, he demands that text- books treat universal common ancestry as PHYLOGENETIC TREES unproven and refrain from illustrating that n biology, a phylogenetic tree, or phyloge- “theory” with misleading phylogenies. ny, is used to show the genealogic relation- Therefore, according to Wells, textbooks Iships of living things. A phylogeny is not should state that there is no evidence for com- so much evidence for evolution as much as it mon descent and that the most recent research is a codification of data about evolutionary his- refutes the concept entirely. Wells is complete- tory. According to biological evolution, organ- ly wrong on all counts, and his argument is isms share common ancestors; a phylogeny entirely based on misdirection and confusion. shows how organisms are related. The tree of He mixes up these various topics in order to life shows the path evolution took to get to the confuse the reader into thinking that when current diversity of life. It also shows that we combined, they show an endemic failure of can ascertain the genealogy of disparate living evolutionary theory. In effect, Wells plays the organisms. This is evidence for evolution only equivalent of an intellectual shell game, put- in that we can construct such trees at all. If ting so many topics into play that the “ball” of evolution had not happened or common ances- evolution gets lost. try were false, we would not be able to discov- THE CAMBRIAN EXPLOSION er hierarchical branching genealogies for ells claims that the Cambrian organisms (although textbooks do not general- Explosion “presents a serious chal- ly explain this well). -
The Rooting of the Universal Tree of Life Is Not Reliable
J Mol Evol (1999) 49:509–523 © Springer-Verlag New York Inc. 1999 The Rooting of the Universal Tree of Life Is Not Reliable Herve´ Philippe,1 Patrick Forterre2 1 Phyloge´nie et Evolution Mole´culaires (UPRESA 8080 CNRS), Baˆtiment 444, Universite´ Paris-Sud, 91405 Orsay-Cedex, France 2 Institut de Ge´ne´tique et Microbiologie (UMR 8621 CNRS), Baˆtiment 409, Universite´ Paris-Sud, 91405 Orsay-Cedex, France Abstract. Several composite universal trees connected terial rooting could be explained by an attraction be- by an ancestral gene duplication have been used to root tween this branch and the long branch of the outgroup. the universal tree of life. In all cases, this root turned out Finally, we suggested that an eukaryotic rooting could be to be in the eubacterial branch. However, the validity of a more fruitful working hypothesis, as it provides, for results obtained from comparative sequence analysis has example, a simple explanation to the high genetic simi- recently been questioned, in particular, in the case of larity of Archaebacteria and Eubacteria inferred from ancient phylogenies. For example, it has been shown that complete genome analysis. several eukaryotic groups are misplaced in ribosomal RNA or elongation factor trees because of unequal rates Key words: Root of the tree of life — ATPase — of evolution and mutational saturation. Furthermore, the Carbamoyl phosphate synthetase — Elongation factor — addition of new sequences to data sets has often turned tRNA synthetase — Signal recognition particle — Mu- apparently reasonable phylogenies into confused ones. tational saturation — Long branch attraction We have thus revisited all composite protein trees that have been used to root the universal tree of life up to now (elongation factors, ATPases, tRNA synthetases, car- bamoyl phosphate synthetases, signal recognition par- Introduction ticle proteins) with updated data sets. -
Article Leibniz on Whether the World Increases In
British Journal for the History of Philosophy 14(1) 2006: 51 – 68 ARTICLE LEIBNIZ ON WHETHER THE WORLD INCREASES IN PERFECTION Lloyd Strickland In a letter to Bourguet written on 5 August 1715, a little over a year before his death, Leibniz suggests that, on the question of the world’s perfection, ‘Two hypotheses can be formed – one that nature is always equally perfect, the other that it always increases in perfection’ (L664).1 He then proceeds to split the second option into two further hypotheses: first, that the world has been increasing in perfection since its inception at a first moment; and second, that it has been increasing in perfection from all eternity. He illustrates these alternatives by means of the following diagrams: 1The abbreviations I use throughout when citing Leibniz are as follows: A ¼ Sa¨mtliche Schriften und Briefe, edited by Akademie der Wissenschaften, multiple Vols in six series, cited by series (reihe) and volume (band) (Berlin, 1923–). AG ¼ Philosophical Essays, translated and edited by Roger Ariew and Daniel Garber (Indianapolis, 1989). D ¼ De Summa Rerum, translated by G. H. R. Parkinson (New Haven, 1992). DM ¼ Discourse on Metaphysics, cited by section number, various translations in AG, L, P, W, etc. Dn ¼ The Philosophical Works of Leibnitz, translated and edited by George Martin Duncan (New Haven, 1908). E ¼ Opera Philosophica, edited by J. E. Erdmann (Berlin, 1840). G ¼ Die philosophiscen Schriften von Gottfried Wilhelm Leibniz, edited by C. I. Gerhardt, 7 Vols (Berlin, 1875–90). GM ¼ G. W. Leibniz: Mathematische Schriften, edited by C. I. Gerhardt, 7 Vols (Berlin, 1962). -
Plato: Seventh Letter
PHRU 1000 Philosophy of Human Nature Gyula Klima E-mail: [email protected] Web: http://faculty.fordham.edu/klima/ 1 PHRU 1000 PHILOSOPHY OF HUMAN NATURE.....................................................1 PLATO: SEVENTH LETTER .........................................................................................4 ARISTOTLE: ON THE SOUL (WITH ST. THOMAS AQUINAS'S COMMENTARY)..............................................................................................................7 BOOK III, CHAPTER IV ....................................................................................................7 ST. THOMAS'S COMMENTARY: LECTIO SEVEN.........................................................7 BOOK III, CHAPTER IV, CONTINUED .........................................................................12 ST. THOMAS'S COMMENTARY: LECTIO EIGHT.......................................................13 BOOK III, CHAPTER V....................................................................................................17 ST. THOMAS'S COMMENTARY: LECTIO TEN ...........................................................18 BOOK III, CHAPTER VI ..................................................................................................21 CHAPTER VII...................................................................................................................22 ST. THOMAS'S COMMENTARY: LECTIO ELEVEN....................................................22 BOOK III, CHAPTER VII, CONTINUED........................................................................25