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Comparative and Population Genomics Landscape of Phellinus Noxius
bioRxiv preprint doi: https://doi.org/10.1101/132712; this version posted September 17, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Comparative and population genomics landscape of Phellinus noxius: 2 a hypervariable fungus causing root rot in trees 3 4 Chia-Lin Chung¶1,2, Tracy J. Lee3,4,5, Mitsuteru Akiba6, Hsin-Han Lee1, Tzu-Hao 5 Kuo3, Dang Liu3,7, Huei-Mien Ke3, Toshiro Yokoi6, Marylette B Roa3,8, Meiyeh J Lu3, 6 Ya-Yun Chang1, Pao-Jen Ann9, Jyh-Nong Tsai9, Chien-Yu Chen10, Shean-Shong 7 Tzean1, Yuko Ota6,11, Tsutomu Hattori6, Norio Sahashi6, Ruey-Fen Liou1,2, Taisei 8 Kikuchi12 and Isheng J Tsai¶3,4,5,7 9 10 1Department of Plant Pathology and Microbiology, National Taiwan University, Taiwan 11 2Master Program for Plant Medicine, National Taiwan University, Taiwan 12 3Biodiversity Research Center, Academia Sinica, Taipei, Taiwan 13 4Biodiversity Program, Taiwan International Graduate Program, Academia Sinica and 14 National Taiwan Normal University 15 5Department of Life Science, National Taiwan Normal University 16 6Department of Forest Microbiology, Forestry and Forest Products Research Institute, 17 Tsukuba, Japan 18 7Genome and Systems Biology Degree Program, National Taiwan University and Academia 19 Sinica, Taipei, Taiwan 20 8Philippine Genome Center, University of the Philippines, Diliman, Quezon City, Philippines 21 1101 -
The Cardioprotective Properties of Agaricomycetes Mushrooms Growing in the Territory of Armenia (Review) Susanna Badalyan, Anush Barkhudaryan, Sylvie Rapior
The Cardioprotective Properties of Agaricomycetes Mushrooms Growing in the Territory of Armenia (Review) Susanna Badalyan, Anush Barkhudaryan, Sylvie Rapior To cite this version: Susanna Badalyan, Anush Barkhudaryan, Sylvie Rapior. The Cardioprotective Properties of Agari- comycetes Mushrooms Growing in the Territory of Armenia (Review). International Journal of Medic- inal Mushrooms, Begell House, 2021, 23 (5), pp.21-31. 10.1615/IntJMedMushrooms.2021038280. hal-03202984 HAL Id: hal-03202984 https://hal.umontpellier.fr/hal-03202984 Submitted on 20 Apr 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. The Cardioprotective Properties of Agaricomycetes Mushrooms Growing in the territory of Armenia (Review) Susanna M. Badalyan 1, Anush Barkhudaryan 2, Sylvie Rapior 3 1Laboratory of Fungal Biology and Biotechnology, Institute of Pharmacy, Department of Biomedicine, Yerevan State University, Yerevan, Armenia; 2Department of Cardiology, Clinic of General and Invasive Cardiology, University Hospital № 1, Yerevan State Medical University, Yerevan, Armenia; -
PROCEEDINGS of the 25Th ANNUAL WESTERN INTERNATIONAL FOREST DISEASE WORK CONFERENCE
PROCEEDINGS OF THE 25th ANNUAL WESTERN INTERNATIONAL FOREST DISEASE WORK CONFERENCE Victoria, British Columbia September 1977 Proceedings of the 25th Annual Western International Forest Disease Work Conference Victoria, British Columbia September 1977 Compiled by: This scan has not been edited or customized. The quality of the reproduction is based on the condition of the original source. Proceedings of the Twenty-Fifth Western International Forest Disease Work Conference Victoria, British Columbia September 1977 TABLE OF CONTENTS Page Forward Opening Remarks, Chairman Don Graham 2 Memorial Statement - Stuart R. Andrews 3 Welcoming Address: Forest Management in British Columbia with Particular Reference to the Province's Forest disease Problems Bill Young 5 Keynote Address: Forest Diseases as a Part of the Forest Ecosystem Paul Brett PANEL: REGULATORY FUNCTIONS OF DISEASES IN FOREST ECOSYSTEMS 10 Introduction to Regulatory Functions of Diseases in Forest Ecosystems J. R. Parmeter 11 Relationships of Tree Diseases and Stand Density Ed F. Wicker 13 Forest Diseases as Determinants of Stand Composition and Forest Succession Earl E. Nelson 18 Regulation of Site Selection James W. Byler 21 Disease and Generation Time J. R. Parmeter PANEL: INTENSIVE FOREST MANAGEMENT AS INFLUENCED BY FOREST DISEASES 22 Dwarf Mistletoe and Western Hemlock Management K. W. Russell 30 Phellinus weirii and Intensive Management Workshops as an aid in Reaching the Practicing Forester G. W. Wallis 33 Fornes annosus in Second-Growth Stands Duncan Morrison 36 Armillaria mellea and East Side Pine Management Gregory M. Filip 39 Thinning Second Growth Stands Paul E. Aho PANEL: KNOWLEDGE UTILIZATION IN WESTERN FOREST PATHOLOGY 44 Knowledge Utilization in Western Forest Pathology R Z. -
Field Guide for Danger Tree Identification and Response
United States Department of Agriculture Field Guide for Forest Service Pacific Northwest Danger Tree Region Identification and United States Response Department of Interior Bureau of Land Management Oregon Associated Oregon OSHA Loggers, Inc. Inside Front Cover Field Guide for Danger Tree Identification and Response Richard Toupin Regional Logging Engineer, Gregory Filip Regional Forest Pathologist, Thomas Erkert Transportation Group Leader Pacific Northwest Region USDA Forest Service • Michael Barger Logging Specialist Salem District USDI Bureau of Land Management • 2008 Acknowledgements We thank the following people who contributed to revising this guide: Diane Hildebrand, Donald Goheen, Craig Schmitt, Kristen Chadwick, Angel Saavedra, and Katrina Mallams. Graphic Design: Michael Hamel (FS) The U.S. Department of Agriculture (USDA) prohibits discrimination in all its programs and activities on the basis of race, color, national origin, age, disability, and where applicable, sex, marital status, familial status, parental status, religion, sexual orientation, genetic information, political beliefs, reprisal, or because all or part of an individual’s income is derived from any public assistance program. (Not all prohibited bases apply to all programs.) Persons with disabilities who require alternative means for communication of program information (Braille, large print, audiotape, etc.) should contract USDA’s TARGET Center at 202-720-2600 (voice and TDD). To file a complaint of discrimination, write to USDA, Director, Office of Civil Rights, 1400 Independence Avenue, S.W., Washington, D.C. 20250-9410, or call 800-795-3272 (voice) or 202-720-6382 (TDD). USDA is an equal opportunity provider and employer. R6-NR-FP-PR-01-08 1 2 Table of Contents Introduction ...............................................................5 Regulatory Basis ........................................................6 Responsibilities. -
Phellinus Sulphurascens and the Closely Related P
Mycologia, 86(1), 1994, pp. 121-130. Phellinus sulphurascens and the closely related P. weirii in North America Michael J. Larsen1 cedar as “perennial P. weirii. ” Clark (1958) deter- Francis F. Lombard mined that “cedar isolates” and “noncedar isolates” Joseph W. Clark may be separated on the basis of cultural character- U.S. Department ofAgriculture, Forest Service, Forest istics. However, Nobles (1948, 1965) did not distinguish Products Laboratory,2 One Gifford Pinchot Drive, the two forms in axenic culture. Angwin (1989) and Madison, Wisconsin 53705-2398 Angwin and Hansen (1989, in press) developed a back- pairing method to determine compatibility in mono- karyon-monokaryon and monokaryon-heterokaryon Abstract: Monokaryotic isolates of Phellinus sulphur- (di-mon) pairings and demonstrated a high degree of ascens, a fungus originally described from the Primorsk genetic isolation (incompatibility) between the western Territory, Russia, are compatible with monokaryotic redcedar and Douglas-fir forms. Protein banding pat- isolates of, what has been called in North America, terns obtained by polyacrylamide gel electrophoresis the Douglas-fir form of P. weirii. Phellinus weirii, orig- (SDS-PAGE) further demonstrated the genetic differ- inally described from Idaho as a root and stem decay ences between the two groups. However, because ex- fungus of western redcedar, is not compatible with amples of partial compatibility were observed in some monokaryotic isolates of P. sulphurascens or the Doug- monokaryon-monokaryon pairings, Angwin and Han- las-fir form of P. weirii. Differences between P. sul- sen (1989, in press) concluded that the groups are best phurascens and P. weirii are noted. Observations on referred to as “intersterility groups.” Banik et al. -
Taxonomy and Diversity of the Genus Phellinus Quél. S.S. (Basidiomycota, Hymenochaetaceae) in Koderma Wildlife Sanctuary, Jharkhand, India
ISSN (Online): 2349 -1183; ISSN (Print): 2349 -9265 TROPICAL PLANT RESEARCH 6(3): 472–485, 2019 The Journal of the Society for Tropical Plant Research DOI: 10.22271/tpr.2019.v6.i3.058 Research article Taxonomy and diversity of the Genus Phellinus Quél. s.s. (Basidiomycota, Hymenochaetaceae) in Koderma wildlife sanctuary, Jharkhand, India Arvind Parihar1*, Y. V. Rao2, S.B. Padal2, Kanad Das1 and M. E. Hembrom3 1 Cryptogamic Unit, Botanical Survey of India, P.O. Botanical Garden, Howrah, West Bengal, India 2 Department of Botany, Andhra University Visakhapatnam, Andhra Pradesh, India 3 Central National Herbarium, Botanical Survey of India, P.O. Botanical Garden, Howrah, West Bengal, India *Corresponding Author: [email protected] [Accepted: 11 December 2019] Abstract: The Genus Phellinus Quél. s. s. is a diverse genus in the Family Hymenochaetaceae, which is represented by 12 species in the Koderma Wildlife Sanctuary (KWS), Jharkhand. In the present communication important macro- and micro-morphological features of the species of Phellinus Quél. s.s. present in KWLS is given. An artificial key to the species present in KWLS is also provided. Keywords: Phellinus - Taxonomy - Macrofungi - Koderma - Jharkhand. [Cite as: Parihar A, Rao YV, Padal SB, Das K & Hembrom ME (2019) Taxonomy and diversity of the Genus Phellinus Quél. s.s. (Basidiomycota, Hymenochaetaceae) in Koderma wildlife sanctuary, Jharkhand, India. Tropical Plant Research 6(3): 472–485] INTRODUCTION Traditionally genus Phellinus Quél. (a macrofungal genus causing serious wood rot) was considered as one of the largest genera of the family Hymenochaetaceae. This genus was described to encompass poroid Hymenochaetaceae (Hymenochaetales, Basidiomycota) with perennial basidiomata and a dimitic hyphal system (Larsen & Cobb-Poulle 1990, Wagner & Fischer 2002) but these characteristic features gradually appeared to be artificial because many intermediate forms have also been reported by many workers (Fiasson & Niemelä 1984, Corner 1991, Dai 1995, 1999, 2010, Fischer 1995, Wagner & Fischer 2001). -
Checklist of the Aphyllophoraceous Fungi (Agaricomycetes) of the Brazilian Amazonia
Posted date: June 2009 Summary published in MYCOTAXON 108: 319–322 Checklist of the aphyllophoraceous fungi (Agaricomycetes) of the Brazilian Amazonia ALLYNE CHRISTINA GOMES-SILVA1 & TATIANA BAPTISTA GIBERTONI1 [email protected] [email protected] Universidade Federal de Pernambuco, Departamento de Micologia Av. Nelson Chaves s/n, CEP 50760-420, Recife, PE, Brazil Abstract — A literature-based checklist of the aphyllophoraceous fungi reported from the Brazilian Amazonia was compiled. Two hundred and sixteen species, 90 genera, 22 families, and 9 orders (Agaricales, Auriculariales, Cantharellales, Corticiales, Gloeophyllales, Hymenochaetales, Polyporales, Russulales and Trechisporales) have been reported from the area. Key words — macrofungi, neotropics Introduction The aphyllophoraceous fungi are currently spread througout many orders of Agaricomycetes (Hibbett et al. 2007) and comprise species that function as major decomposers of plant organic matter (Alexopoulos et al. 1996). The Amazonian Forest (00°44'–06°24'S / 58°05'–68°01'W) covers an area of 7 × 106 km2 in nine South American countries. Around 63% of the forest is located in nine Brazilian States (Acre, Amazonas, Amapá, Pará, Rondônia, Roraima, Tocantins, west of Maranhão, and north of Mato Grosso) (Fig. 1). The Amazonian forest consists of a mosaic of different habitats, such as open ombrophilous, stational semi-decidual, mountain, “terra firme,” “várzea” and “igapó” forests, and “campinaranas” (Amazonian savannahs). Six months of dry season and six month of rainy season can be observed (Museu Paraense Emílio Goeldi 2007). Even with the high biodiversity of Amazonia and the well-documented importance of aphyllophoraceous fungi to all arboreous ecosystems, few studies have been undertaken in the Brazilian Amazonia on this group of fungi (Bononi 1981, 1992, Capelari & Maziero 1988, Gomes-Silva et al. -
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Cryptogamie, Mycologie, 2015, 36 (1): 43-78 © 2015 Adac. Tous droits réservés Diversity of the poroid Hymenochaetaceae (Basidiomycota) from the Atlantic Forest and Pampa in Southern Brazil Marisa de CAMPOS-SANTANAa*, Gerardo ROBLEDOb, Cony DECOCKc & Rosa Mara BORGES DA SILVEIRAa aUniversidade Federal do Rio Grande do Sul, Programa de Pós-Graduação em Botânica, Avenida Bento Gonçalves 9500, 91501-970, Porto Alegre, RS, Brazil bInstituto Multidisciplinario de Biología Vegetal, Universidad Nacional de Córdoba, C.C.495, 5000 Córdoba, Argentina cMycothèque de l’Université catholique de Louvain (MUCL, BCCMTM), Earth and Life Institute – Microbiology (ELIM), Université catholique de Louvain, Croix du Sud 2 bte L7.05.06, B-1348 Louvain-la-Neuve, Belgium Abstract – A synopsis of the current knowledge about the poroid Hymenochaetaceae from Southern Brazil (States Paraná, Santa Catarina and Rio Grande do Sul) is presented. Forty- two species belonging to nine genera are reported from the areas surveyed. An annotated, partly illustrated, checklist and identification keys are provided. The new combinations Fomitiporia bambusarum and Fulvifomes rhytiphloeus are also proposed. Atlantic Forest / Hymenochaetales / Neotropics / Taxonomy INTRODUCTION Hymenochaetaceae was formally described by Donk in 1948. It includes taxa whose basidiomata present permanent positive xantochroic reaction – dark discoloration in alkali –, yellow to brown tubes trama, simple septate generative hyphae, mono- to dimitic hyphal system, and variable occurrence of setoid structures such as hymenial or extra-hymenial setae or setal hyphae. The family encompasses a group of wood-decomposing causing white rot of wood (Hoff et al. 2004). The poroid basidiomycetes have been continuously surveyed in Southern Brazil, mainly in the last two decades (e.g. -
<I>Phellinus (Hymenochaetaceae)
ISSN (print) 0093-4666 © 2010. Mycotaxon, Ltd. ISSN (online) 2154-8889 MYCOTAXON doi: 10.5248/114.211 Volume 114, pp. 211–216 October–December 2010 A new species of Phellinus (Hymenochaetaceae) growing on bamboo in tropical China Li-Wei Zhou* [email protected] Institute of Applied Ecology, Chinese Academy of Sciences Shenyang 110016, China Graduate University of the Chinese Academy of Sciences Beijing 100049, China Bi-Si Jia Institute of Microbiology, PO Box 61, Beijing Forestry University Beijing 100083, China Abstract — Phellinus bambusicola sp. nov. is described and illustrated from Hainan Province, southern China. It has annual and resupinate basidiocarps, clay-buff to pale fawn pore surface, abundant hymenial setae, broadly ellipsoid and thin-walled basidiospores, setal hyphae present in the subiculum but absent at the sterile margin, and a growth on bamboo. The new species is similar to Phellinus ferruginosus, but the latter has an annual to perennial growth habit, yellowish brown to dark reddish brown pore surface, smaller pores (6–8 per mm), setal hyphae present at the sterile margin, and narrowly ellipsoid basidiospores. Key words — Hymenochaetales, polypore, taxonomy Introduction Phellinus Quél., with over 250 taxa worldwide, is the largest genus in the Hymenochaetaceae (Larsen & Cobb-Poulle 1990, Dai 1999, 2010, Núñez & Ryvarden 2000, Gibertoni et al. 2004, Ryvarden 2004, Parmasto 2007). Wanger & Fischer (2002), who studied Phellinus sensu lato and Inonotus sensu lato phylogenetically, divided the Phellinus–Inonotus complex into 13 genera. Since Dai (1999) recorded 45 species of Phellinus from East Asia new species or new records have been found in China, where about 50 species in the genus have * Corresponding author 212 .. -
A Field Guide to Diseases and Insect Pests of Northern and Central
2013 Reprint with Minor Revisions A FIELD GUIDE TO DISEASES & INSECT PESTS OF NORTHERN & CENTRAL ROCKY MOUNTAIN CONIFERS HAGLE GIBSON TUNNOCK United States Forest Service Department of Northern and Agriculture Intermountain Regions United States Department of Agriculture Forest Service State and Private Forestry Northern Region P.O. Box 7669 Missoula, Montana 59807 Intermountain Region 324 25th Street Ogden, UT 84401 http://www.fs.usda.gov/main/r4/forest-grasslandhealth Report No. R1-03-08 Cite as: Hagle, S.K.; Gibson, K.E.; and Tunnock, S. 2003. Field guide to diseases and insect pests of northern and central Rocky Mountain conifers. Report No. R1-03-08. (Reprinted in 2013 with minor revisions; B.A. Ferguson, Montana DNRC, ed.) U.S. Department of Agriculture, Forest Service, State and Private Forestry, Northern and Intermountain Regions; Missoula, Montana, and Ogden, Utah. 197 p. Formated for online use by Brennan Ferguson, Montana DNRC. Cover Photographs Conk of the velvet-top fungus, cause of Schweinitzii root and butt rot. (Photographer, Susan K. Hagle) Larvae of Douglas-fir bark beetles in the cambium of the host. (Photographer, Kenneth E. Gibson) FIELD GUIDE TO DISEASES AND INSECT PESTS OF NORTHERN AND CENTRAL ROCKY MOUNTAIN CONIFERS Susan K. Hagle, Plant Pathologist (retired 2011) Kenneth E. Gibson, Entomologist (retired 2010) Scott Tunnock, Entomologist (retired 1987, deceased) 2003 This book (2003) is a revised and expanded edition of the Field Guide to Diseases and Insect Pests of Idaho and Montana Forests by Hagle, Tunnock, Gibson, and Gilligan; first published in 1987 and reprinted in its original form in 1990 as publication number R1-89-54. -
Draft Genomes of the Fungal Pathogen Phellinus Noxius in Hong Kong
bioRxiv preprint doi: https://doi.org/10.1101/209312; this version posted October 27, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Draft genomes of the fungal pathogen Phellinus noxius in Hong Kong Karen Sze Wing Tsang1, Regent Yau Ching Lam1,2, Hoi Shan Kwan1* 1 School of Life Sciences, The Chinese University of Hong Kong, Hong Kong SAR 2 Muni Arborist Limited, Hong Kong SAR *Corresponding author: [email protected] bioRxiv preprint doi: https://doi.org/10.1101/209312; this version posted October 27, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Abstract The fungal pathogen Phellinus noxius is the underlying cause of brown root rot, a disease with causing tree mortality globally, causing extensive damage in urban areas and crop plants. This disease currently has no cure, and despite the global epidemic, little is known about the pathogenesis and virulence of this pathogen. Using Ion Torrent PGM, Illumina MiSeq and PacBio RSII sequencing platforms with various genome assembly methods, we produced the draft genome sequences of four P. noxius strains isolated from infected trees in Hong Kong to further understand the pathogen and identify the mechanisms behind the aggressive nature and virulence of this fungus. -
<I>Rickenella Fibula</I>
University of Tennessee, Knoxville TRACE: Tennessee Research and Creative Exchange Masters Theses Graduate School 8-2017 Stable isotopes, phylogenetics, and experimental data indicate a unique nutritional mode for Rickenella fibula, a bryophyte- associate in the Hymenochaetales Hailee Brynn Korotkin University of Tennessee, Knoxville, [email protected] Follow this and additional works at: https://trace.tennessee.edu/utk_gradthes Part of the Evolution Commons Recommended Citation Korotkin, Hailee Brynn, "Stable isotopes, phylogenetics, and experimental data indicate a unique nutritional mode for Rickenella fibula, a bryophyte-associate in the Hymenochaetales. " Master's Thesis, University of Tennessee, 2017. https://trace.tennessee.edu/utk_gradthes/4886 This Thesis is brought to you for free and open access by the Graduate School at TRACE: Tennessee Research and Creative Exchange. It has been accepted for inclusion in Masters Theses by an authorized administrator of TRACE: Tennessee Research and Creative Exchange. For more information, please contact [email protected]. To the Graduate Council: I am submitting herewith a thesis written by Hailee Brynn Korotkin entitled "Stable isotopes, phylogenetics, and experimental data indicate a unique nutritional mode for Rickenella fibula, a bryophyte-associate in the Hymenochaetales." I have examined the final electronic copy of this thesis for form and content and recommend that it be accepted in partial fulfillment of the requirements for the degree of Master of Science, with a major in Ecology