Mitochondrial DNA Haplogroups and Age-Related Hearing Loss
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Germanic Origins from the Perspective of the Y-Chromosome
Germanic Origins from the Perspective of the Y-Chromosome By Michael Robert St. Clair A dissertation submitted in partial satisfaction of the requirements for the degree of Doctor in Philosophy in German in the Graduate Division of the University of California, Berkeley Committee in charge: Irmengard Rauch, Chair Thomas F. Shannon Montgomery Slatkin Spring 2012 Abstract Germanic Origins from the Perspective of the Y-Chromosome by Michael Robert St. Clair Doctor of Philosophy in German University of California, Berkeley Irmengard Rauch, Chair This dissertation holds that genetic data are a useful tool for evaluating contemporary models of Germanic origins. The Germanic languages are a branch of the Indo-European language family and include among their major contemporary representatives English, German, Dutch, Danish, Swedish, Norwegian and Icelandic. Historically, the search for Germanic origins has sought to determine where the Germanic languages evolved, and why the Germanic languages are similar to and different from other European languages. Both archaeological and linguist approaches have been employed in this research direction. The linguistic approach to Germanic origins is split among those who favor the Stammbaum theory and those favoring language contact theory. Stammbaum theory posits that Proto-Germanic separated from an ancestral Indo-European parent language. This theoretical approach accounts for similarities between Germanic and other Indo- European languages by posting a period of mutual development. Germanic innovations, on the other hand, occurred in isolation after separation from the parent language. Language contact theory posits that Proto-Germanic was the product of language convergence and this convergence explains features that Germanic shares with other Indo-European languages. -
ZEYLANICA a Study of the Peoples and Languages of Sri Lanka
ZEYLANICA A Study of the Peoples and Languages of Sri Lanka Asiff Hussein Second Edition: September 2014 ZEYLANICA. A Study of the Peoples and Languages of Sri Lanka ISBN 978-955-0028-04-7 © Asiff Hussein Printed by: Printel (Pvt) Ltd 21/11, 4 th Lane, Araliya Uyana Depanama, Pannipitiya Published by: Neptune Publications CONTENTS Chapter 1 Legendary peoples of Lanka Chapter 2 The Veddas, the aboriginal inhabitants of Lanka and their speech Chapter 3 The Origins of the Sinhalese nation and the Sinhala language Chapter 4 The Origins of the Sri Lankan Tamils and the Tamil language Chapter 5 The Sri Lankan Moors and their language Chapter 6 The Malays of Sri Lanka and the local Malay language Chapter 7 The Memons, a people of North Indian origin and their language Chapter 8 Peoples of European origin. The Portuguese and Dutch Burghers Chapter 9 The Kaffirs. A people of African origin Chapter 10 The Ahikuntaka. The Gypsies of Sri Lanka INTRODUCTORY NOTE The system of transliteration employed in the text, save for citations, is the standard method. Thus dots below letters represent retroflex sounds which are pronounced with the tip of the tongue striking the roof of the mouth further back than for dental sounds which are articulated by placing the tip of the tongue against the upper front teeth. Among the other sounds transliterated here c represents the voiceless palato-alveolar affricate (as sounded in the English church ) and ś the palatal sibilant (as sounded in English sh ow ). The lingual which will be found occurring in Sanskrit words is similar in pronunciation to the palatal . -
HUMAN MITOCHONDRIAL DNA HAPLOGROUP J in EUROPE and NEAR EAST M.Sc
UNIVERSITY OF TARTU FACULTY OF BIOLOGY AND GEOGRAPHY, INSTITUTE OF MOLECULAR AND CELL BIOLOGY, DEPARTMENT OF EVOLUTIONARY BIOLOGY Piia Serk HUMAN MITOCHONDRIAL DNA HAPLOGROUP J IN EUROPE AND NEAR EAST M.Sc. Thesis Supervisors: Ph.D. Ene Metspalu, Prof. Richard Villems Tartu 2004 Table of contents Abbreviations .............................................................................................................................3 Definition of basic terms used in the thesis.........................................................................3 Introduction................................................................................................................................4 Literature overview ....................................................................................................................5 West–Eurasian mtDNA tree................................................................................................5 Fast mutation rate of mtDNA..............................................................................................9 Estimation of a coalescence time ......................................................................................10 Topology of mtDNA haplogroup J....................................................................................12 Geographic spread of mtDNA haplogroup J.....................................................................20 The aim of the present study ....................................................................................................22 -
Mtdna Haplogroup J: a Contributing Factor of Optic Neuritis
European Journal of Human Genetics (1999) 7, 404–406 t © 1999 Stockton Press All rights reserved 1018–4813/99 $12.00 http://www.stockton-press.co.uk/ejhg SHORT REPORT mtDNA haplogroup J: a contributing factor of optic neuritis Pascal Reynier1, Isabelle Penisson-Besnier2, Corinne Moreau2, Fr´ed´erique Savagner1, Bruno Vielle3, Jean Emile4, Fr´ed´eric Dubas2 and Yves Malthi`ery1 1Laboratoire de Biochimie et Biologie Mol´eculaire2Service de Neurologie A3Service de Biostatistiques4Service de Neurologie B, Centre Hospitalier Universitaire d’Angers, France Optic neuritis frequently occurs in multiple sclerosis (MS), and shares several similarities with the optic neuritis of Leber’s hereditary optic neuropathy (LHON), which is mainly due to maternally transmitted mitochondrial DNA (mtDNA) mutations. Our report shows for the first time that a mitochondrial DNA background could influence the clinical expression of MS. One European mtDNA haplogroup was found only in MS patients with optic neuritis but not in MS patients without visual symptoms. Therefore, we hypothesize that mtDNA haplogroup J might constitute a risk factor for optic neuritis occurrence when it is coincidentally associated with MS, but not be a risk factor for developing MS per se as suggested previously. Keywords: multiple sclerosis; optic neuritis; LHON; mtDNA; haplotypes Introduction Additional mutation at position 15257 provides the haplogroup J2. Torroni et al have shown that In respect of LHON, the mtDNA ‘primary’ mutations haplogroup J increases the risk of disease expression alone can lead to optic atrophy, but several ‘secondary’ when a primary mutation is present. Haplogroup T is mitochondrial mutations must be associated to induce 1 characterised by the association of 4216 and 4917 point clinical expression of LHON. -
Ancient Mitochondrial DNA from Pre-Historic
Grand Valley State University ScholarWorks@GVSU Masters Theses Graduate Research and Creative Practice 4-30-2011 Ancient Mitochondrial DNA From Pre-historic Southeastern Europe: The rP esence of East Eurasian Haplogroups Provides Evidence of Interactions with South Siberians Across the Central Asian Steppe Belt Jeremy R. Newton Grand Valley State University Follow this and additional works at: http://scholarworks.gvsu.edu/theses Part of the Cell Biology Commons, and the Molecular Biology Commons Recommended Citation Newton, Jeremy R., "Ancient Mitochondrial DNA From Pre-historic Southeastern Europe: The rP esence of East Eurasian Haplogroups Provides Evidence of Interactions with South Siberians Across the Central Asian Steppe Belt" (2011). Masters Theses. 5. http://scholarworks.gvsu.edu/theses/5 This Thesis is brought to you for free and open access by the Graduate Research and Creative Practice at ScholarWorks@GVSU. It has been accepted for inclusion in Masters Theses by an authorized administrator of ScholarWorks@GVSU. For more information, please contact [email protected]. ANCIENT MITOCHONDRIAL DNA FROM PRE-HISTORIC SOUTH- EASTERN EUROPE: THE PRESENCE OF EAST EURASIAN HAPLOGROUPS PROVIDES EVIDENCE OF INTERACTIONS WITH SOUTH SIBERIANS ACROSS THE CENTRAL ASIAN STEPPE BELT A thesis submittal in partial fulfillment of the requirements for the degree of Master of Science By Jeremy R. Newton To Cell and Molecular Biology Department Grand Valley State University Allendale, MI April, 2011 “Not all those who wander are lost.” J.R.R. Tolkien iii ACKNOWLEDGEMENTS I would like to extend my sincerest thanks to every person who has motivated, directed, and encouraged me throughout this thesis project. I especially thank my graduate advisor, Dr. -
Mitochondrial DNA Haplogroups Observed in Iraqi Population
International Journal of Science and Research (IJSR) ISSN (Online): 2319-7064 Index Copernicus Value (2013): 6.14 | Impact Factor (2014): 5.611 Mitochondrial DNA Haplogroups Observed in Iraqi Population Nihad A.M. Al-Rashedi1, Mohammed A. Jebor2, Talib AH Mousa3, Ali H. Al-Saadi4 1, 3 Science College- Muthanna University; 2, 4Science Colleges- Babylon University Abstract: Mitochondrial DNA hypervariable regions I and II of control region were sequenced from 100 random healthy unrelated individuals of three sequential generations belong to the Arab ethnic of Iraqi population. The aim of this study was to detection the mtDNA haplotypes and classifying it into mtDNA haplogroups will be useful in forensic genetics applications and determining the Iraqi population history. The sequence variation within D-loop control region were analyzed the composition of haplogroups that showed high frequency of haplogroups U, H, J,M, D,T and N (18%, 14%,10%, 9%, 7%, 7% and 7%, respectively, moderate frequency of haplogroups L and I was (4%) and B, A, R and K (2%), and low frequency of haplogroup pre-HV (1%) . This study was indicated lack of V, P, Y, X, O, Z, Q, G, E and C haplogroups. Keywords: mitochondrial DNA, haplogroups, DNA Sequencing, Arabic Iraqi population 1. Introduction find it http://mtmanager.yonsei.ac.kr that enables automatically estimate the most mtDNA haplogroups Iraq is located in the Middle East which bordered by Saudi according to control‐region mutation variations and scanning Arabia, Iran, Jordan, Kuwait and Turkey. The Iraqi of similar sequences from the database which includes over population consists of 75–80% Arabs and 20-25% others. -
Y-Chromosome & Mitochondrial DNA Variation
The Genetic Structure of the Kuwaiti and Failaka Island Populations: Y-chromosome & Mitochondrial DNA Variation By Jasem Bader Theyab M.A., University of Kansas, 2010 Copyright 2013 Submitted to the graduate degree program in Anthropology and the Graduate Faculty of the University of Kansas in partial fulfillment of the requirements for the degree of Doctor of Philosophy. ________________________________ Chairperson, Dr. Michael H. Crawford ________________________________ Dr. Majid Hannoum ________________________________ Dr. Deborah Smith ________________________________ Dr. Bartholomew C. Dean ________________________________ Dr. John Kelly Date Defended: May 28, 2013 The Dissertation Committee for Jasem Bader Theyab certifies that this is the approved version of the following dissertation: The Genetic Structure of the Kuwaiti and Failaka Island Populations: Y-chromosome & Mitochondrial DNA Variation ________________________________ Chairperson, Dr. Michael H. Crawford Date approved: May 31, 2013 ii Abstract Recent studies applying multidisciplinary approaches suggest that the Anatomically Modern Homo sapiens (AMHS) passed through the Arabian Peninsula in their major diaspora out of Africa. The Arabian Peninsula is connected to three continents: Africa, Asia, and Europe. In addition to the major diaspora, the Arabian Peninsula has witnessed numerous migrations among the three continents. The populations of the Arabian Peninsula have been investigated to better understand their evolutionary history. This dissertation investigated the paternal genetic structure of the Kuwaiti and Failaka Island populations using 15 loci Y-STR data. In addition, the maternal genetic structure of Failaka Island has been investigated using mtDNA HVS-I sequence data. This is the first genetic study to characterize Failaka Island population. The result showed that the Kuwaiti population has a high frequency of Y- haplogroup J1 (37%) similar to other Arabian populations. -
Eurasian and Sub-Saharan African Mitochondrial DNA Haplogroup Influences Pseudoexfoliation Glaucoma Development in Saudi Patients
Molecular Vision 2011; 17:543-547 <http://www.molvis.org/molvis/v17/a62> © 2011 Molecular Vision Received 24 January 2011 | Accepted 14 February 2011 | Published 19 February 2011 Eurasian and Sub-Saharan African mitochondrial DNA haplogroup influences pseudoexfoliation glaucoma development in Saudi patients Khaled K. Abu-Amero,1 Vicente M. Cabrera,2 José M. Larruga,2 Essam A. Osman,1 Ana M. González,2 Saleh A. Al-Obeidan1 1Ophthalmic Genetics Laboratory, Department of Ophthalmology, College of Medicine, King Saud University, Riyadh, Saudi Arabia; 2Área de Genética. Departamento de Parasitología, Ecología y Genética. Facultad de Biología, Universidad de La Laguna (ULL). Avenida Astrofísico Francisco Sánchez, s/n. 38206 La Laguna (Tenerife), Spain Purpose: To investigate whether different mitochondrial DNA (mtDNA) haplogroups have a role on the development of pseudoexfoliation glaucoma (PEG) in the Saudi Arab population. Methods: The mtDNA regulatory region and coding regions comprising mtDNA haplogroup diagnostic polymorphisms were sequenced in patients with PEG (n=94), healthy matched controls (free of PEG; n=112) and a healthy Saudi Arab population group (n=810). Results: The Eurasian haplogroup T and the Sub-Saharan African Haplogroup L2 confer susceptibility to PEG, whereas the Eurasian haplogroup N1 was associated with reduced risk to develop PEG in the Saudi Arab population. Conclusions: Mitochondrial haplogroups T and L2 may play a role in the development of PEG in the Saudi Arabian population. Pseudoexfoliation (PEX) syndrome is a generalized variants in the Lysyl oxidase-like 1 (LOXL1) autosomal gene. disorder of the extracellular matrix and currently represents This association was first detected in Nordic European the most commonly identified specific cause of open-angle samples [7] and, since then, confirmed in samples with broad glaucoma [1]. -
Carriers of Mitochondrial DNA Macrohaplogroup L3 Basal Lineages Migrated Back to Africa from Asia Around 70,000 Years Ago Vicente M
Cabrera et al. BMC Evolutionary Biology (2018) 18:98 https://doi.org/10.1186/s12862-018-1211-4 RESEARCHARTICLE Open Access Carriers of mitochondrial DNA macrohaplogroup L3 basal lineages migrated back to Africa from Asia around 70,000 years ago Vicente M. Cabrera1* , Patricia Marrero2, Khaled K. Abu-Amero3,4 and Jose M. Larruga1 Abstract Background: The main unequivocal conclusion after three decades of phylogeographic mtDNA studies is the African origin of all extant modern humans. In addition, a southern coastal route has been argued for to explain the Eurasian colonization of these African pioneers. Based on the age of macrohaplogroup L3, from which all maternal Eurasian and the majority of African lineages originated, the out-of-Africa event has been dated around 60-70 kya. On the opposite side, we have proposed a northern route through Central Asia across the Levant for that expansion and, consistent with the fossil record, we have dated it around 125 kya. To help bridge differences between the molecular and fossil record ages, in this article we assess the possibility that mtDNA macrohaplogroup L3 matured in Eurasia and returned to Africa as basal L3 lineages around 70 kya. Results: The coalescence ages of all Eurasian (M,N) and African (L3 ) lineages, both around 71 kya, are not significantly different. The oldest M and N Eurasian clades are found in southeastern Asia instead near of Africa as expected by the southern route hypothesis. The split of the Y-chromosome composite DE haplogroup is very similar to the age of mtDNA L3. An Eurasian origin and back migration to Africa has been proposed for the African Y-chromosome haplogroup E. -
The Social-Construct of Race and Ethnicity: One’S Self-Identity After a DNA Test
Western Michigan University ScholarWorks at WMU Dissertations Graduate College 4-2019 The Social-Construct of Race and Ethnicity: One’s Self-Identity after a DNA Test Kathryn Ann Wilson Western Michigan University, [email protected] Follow this and additional works at: https://scholarworks.wmich.edu/dissertations Part of the Educational Assessment, Evaluation, and Research Commons Recommended Citation Wilson, Kathryn Ann, "The Social-Construct of Race and Ethnicity: One’s Self-Identity after a DNA Test" (2019). Dissertations. 3405. https://scholarworks.wmich.edu/dissertations/3405 This Dissertation-Open Access is brought to you for free and open access by the Graduate College at ScholarWorks at WMU. It has been accepted for inclusion in Dissertations by an authorized administrator of ScholarWorks at WMU. For more information, please contact [email protected]. THE SOCIAL-CONSTRUCT OF RACE AND ETHNICITY: ONES’ SELF-IDENTITY AFTER A DNA TEST by Kathryn Wilson A dissertation submitted to the Graduate College in partial fulfillment of the requirements for the degree of Doctor of Philosophy Educational Leadership, Research and Technology Western Michigan University April 2019 Doctoral Committee: Gary Miron, Ph.D., Chair D. Eric Archer, Ph.D. June Gothberg, Ph.D. Copyright by Kathryn Wilson 2019 ACKNOWLEDGEMENTS I would like to thank my advisor, Professor Gary Miron, for his continued belief that I would find my passion and complete this dissertation. Also, I would like to thank my dissertation advisory committee chair Professor Gary Miron, Ph.D., and committee members Assistant Professor D. Eric Archer, Ph.D., and Assistant Professor June Gothberg, Ph.D. for their advice and support. -
Ashkenazi Jewish Mtdna Haplogroup Distribution Varies Among Distinct Subpopulations: Lessons of Population Substructure in a Closed Group
European Journal of Human Genetics (2007) 15, 498–500 & 2007 Nature Publishing Group All rights reserved 1018-4813/07 $30.00 www.nature.com/ejhg SHORT REPORT Ashkenazi Jewish mtDNA haplogroup distribution varies among distinct subpopulations: lessons of population substructure in a closed group Jeanette Feder1, Ofer Ovadia1, Benjamin Glaser2 and Dan Mishmar*,1 1Department of Life Sciences, Ben-Gurion University of the Negev, Beer-Sheva, Israel; 2Department of Endocrinology, Hadassah-Hebrew University Medical School, Jerusalem, Israel The quest for genes associated with diseases is widely recognized as an essential task in the effort to investigate the genetic basis of complex human disorders and traits. A basic stage in association studies is the careful choice of the model population, with preference to closed groups having little population substructure. Here, we show evidence for significant geographic substructure (P ¼ 0.017) of the maternal lineage represented by mitochondrial DNA variation in one of the most commonly studied populations, the Ashkenazi Jews. Most of the substructure effect stems from differential representation of haplogroups K and H. Our results underline the essentiality of adjusting data of population genetic variation for substructure during the design of association studies, even in apparently closed populations. European Journal of Human Genetics (2007) 15, 498–500. doi:10.1038/sj.ejhg.5201764; published online 24 January 2007 Keywords: ashkenazi jews; population sub-structure; mtDNA Ashkenazi Jews, considered to be an isolated population II diabetes mellitus and its complications recently con- that has undergone a recent bottleneck,1–4 constitute a ducted by our group, we found a significant difference in model population for the search of disease-causing muta- the distribution of linked sets of mitochondrial DNA tions and disease-susceptibility genes. -
Most of the Extant Mtdna Boundaries in South and Southwest Asia Were
BMC Genetics BioMed Central Research article Open Access Most of the extant mtDNA boundaries in South and Southwest Asia were likely shaped during the initial settlement of Eurasia by anatomically modern humans Mait Metspalu*1, Toomas Kivisild1, Ene Metspalu1, Jüri Parik1, Georgi Hudjashov1, Katrin Kaldma1, Piia Serk1, Monika Karmin1, DoronMBehar2, M Thomas P Gilbert6, Phillip Endicott7, Sarabjit Mastana4, Surinder S Papiha5, Karl Skorecki2, Antonio Torroni3 and Richard Villems1 Address: 1Institute of Molecular and Cell Biology, Tartu University, Tartu, Estonia, 2Bruce Rappaport Faculty of Medicine and Research Institute, Technion and Rambam Medical Center, Haifa, Israel, 3Dipartimento di Genetica e Microbiologia, Università di Pavia, Pavia, Italy, 4Department of Human Sciences, Loughborough University, Loughborough, United Kingdom, 5Department of Human Genetics, University of Newcastle-upon- Tyne, United Kingdom, 6Ecology and Evolutionary Biology, The University of Arizona, Tucson, Arizona, USA and 7Henry Wellcome Ancient Biomolecules Centre, Department of Zoology, University of Oxford, Oxford OX1 3PS,United Kingdom Email: Mait Metspalu* - [email protected]; Toomas Kivisild - [email protected]; Ene Metspalu - [email protected]; Jüri Parik - [email protected]; Georgi Hudjashov - [email protected]; Katrin Kaldma - [email protected]; Piia Serk - [email protected]; Monika Karmin - [email protected]; Doron M Behar - [email protected]; M Thomas P Gilbert - [email protected]; Phillip Endicott - [email protected]; Sarabjit Mastana - [email protected]; Surinder S Papiha - [email protected]; Karl Skorecki - [email protected]; Antonio Torroni - [email protected]; Richard Villems - [email protected] * Corresponding author Published: 31 August 2004 Received: 07 May 2004 Accepted: 31 August 2004 BMC Genetics 2004, 5:26 doi:10.1186/1471-2156-5-26 This article is available from: http://www.biomedcentral.com/1471-2156/5/26 © 2004 Metspalu et al; licensee BioMed Central Ltd.