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Part I Chinese Plant Names Index 2010-2017
This Book is Sponsored by Shanghai Chenshan Botanical Garden 上海辰山植物园 Shanghai Chenshan Plant Science Research Center, Chinese Academy of Sciences 中国科学院上海辰山植物科学研究中心 Special Fund for Scientific Research of Shanghai Landscaping ＆ City Appearance Administrative Bureau (G182415) 上海市绿化和市容管理局科研专项 (G182415) National Specimen Information Infrastructure, 2018 Special Funds 中国国家标本平台 2018 年度专项 Shanghai Sailing Program (14YF1413800) 上海市青年科技英才扬帆计划 (14YF1413800) Chinese Plant Names Index 2010-2017 DU Cheng & MA Jin-shuang Chinese Plant Names Index 2010-2017 中国植物名称索引 2010-2017 DU Cheng & MA Jin-shuang Abstract The first two volumes of Chinese Plant Names Index (CPNI) cover the years 2000 through 2009, with entries 1 through 5,516, and 2010 through 2017, with entries 5,517 through 10,795. A unique entry is generated for the specific name of each taxon in a specific publication. Taxonomic treatments cover all novelties at the rank of family, genus, species, subspecies, variety, form and named hybrid taxa, new name changes (new combinations and new names), new records, new synonyms and new typifications for vascular plants reported or recorded from China. Detailed information on the place of publication, including author, publication name, year of publication, volume, issue, and page number, are given in detail. Type specimens and collects information for the taxa and their distribution in China, as well as worldwide, are also provided. The bibliographies were compiled from 182 journals and 138 monographs or books published worldwide. In addition, more than 400 herbaria preserve type specimens of Chinese plants are also listed as an appendix. This book can be used as a basic material for Chinese vascular plant taxonomy, and as a reference for researchers in biodiversity research, environmental protection, forestry and medicinal botany. -
Infrageneric Revision of the Fern Genus Deparia (Athyriaceae, Aspleniineae, Polypodiales)
Systematic Botany (2018), 43(3): pp. 645–655 © Copyright 2018 by the American Society of Plant Taxonomists DOI 10.1600/036364418X697364 Date of publication August 10, 2018 Infrageneric Revision of the Fern Genus Deparia (Athyriaceae, Aspleniineae, Polypodiales) Li-Yaung Kuo,1,7 Atsushi Ebihara,2 Tian-Chuan Hsu,3 Germinal Rouhan,4 Yao-Moan Huang,5 Chun-Neng Wang,1,6,8 Wen-Liang Chiou,3 and Masahiro Kato2 1Institute of Ecology and Evolutionary Biology, National Taiwan University, Taipei 10617, Taiwan 2Department of Botany, National Museum of Nature and Science, Amakubo 4-1-1, Tsukuba, Ibaraki 305-0005, Japan 3Botanical Garden Division, Taiwan Forestry Research Institute, Taipei 10066, Taiwan 4Mus´eum national d’Histoire naturelle, Institut de Syst´ematique, Evolution, Biodiversit´e ((ISYEB) CNRS, Sorbonne Universit´e EPHE), Herbier national, 16 rue Buffon CP39, F-75005 Paris, France 5Silviculture Division, Taiwan Forestry Research Institute, Taipei 10066, Taiwan 6Department of Life Science, National Taiwan University, Taipei 10617, Taiwan 7Current address: Boyce Thompson Institute, Ithaca, New York 14853, USA ([email protected]) 8Author for correspondence ([email protected]) Communicating Editor: Sven Buerki Abstract—Current molecular phylogenetic analyses support the monophyly and circumscription of the athyrioid fern genus Deparia (Athyr- iaceae), which includes previously recognized genera including Athyriopsis, 3Depazium, Dictyodroma, Dryoathyrium (5 Parathyrium), Lunathyrium, and Neotriblemma (5 Triblemma Ching), and 3Neotribleparia. This broad generic concept has been adopted in several recent taxonomic treatments, including the Pteridophyte Phylogeny Group I. However, the infrageneric taxonomy of Deparia still needs further revision. In this study, we provide a new infrageneric classification with five sections and three subsections based on the phylogenetic evidence. -
A Journal on Taxonomic Botany, Plant Sociology and Ecology Reinwardtia
A JOURNAL ON TAXONOMIC BOTANY, PLANT SOCIOLOGY AND ECOLOGY REINWARDTIA A JOURNAL ON TAXONOMIC BOTANY, PLANT SOCIOLOGY AND ECOLOGY Vol. 13(4): 317 —389, December 20, 2012 Chief Editor Kartini Kramadibrata (Herbarium Bogoriense, Indonesia) Editors Dedy Darnaedi (Herbarium Bogoriense, Indonesia) Tukirin Partomihardjo (Herbarium Bogoriense, Indonesia) Joeni Setijo Rahajoe (Herbarium Bogoriense, Indonesia) Teguh Triono (Herbarium Bogoriense, Indonesia) Marlina Ardiyani (Herbarium Bogoriense, Indonesia) Eizi Suzuki (Kagoshima University, Japan) Jun Wen (Smithsonian Natural History Museum, USA) Managing editor Himmah Rustiami (Herbarium Bogoriense, Indonesia) Secretary Endang Tri Utami Lay out editor Deden Sumirat Hidayat Illustrators Subari Wahyudi Santoso Anne Kusumawaty Reviewers Ed de Vogel (Netherlands), Henk van der Werff (USA), Irawati (Indonesia), Jan F. Veldkamp (Netherlands), Jens G. Rohwer (Denmark), Lauren M. Gardiner (UK), Masahiro Kato (Japan), Marshall D. Sunberg (USA), Martin Callmander (USA), Rugayah (Indonesia), Paul Forster (Australia), Peter Hovenkamp (Netherlands), Ulrich Meve (Germany). Correspondence on editorial matters and subscriptions for Reinwardtia should be addressed to: HERBARIUM BOGORIENSE, BOTANY DIVISION, RESEARCH CENTER FOR BIOLOGY-LIPI, CIBINONG 16911, INDONESIA E-mail: [email protected] REINWARDTIA Vol 13, No 4, pp: 367 - 377 THE NEW PTERIDOPHYTE CLASSIFICATION AND SEQUENCE EM- PLOYED IN THE HERBARIUM BOGORIENSE (BO) FOR MALESIAN FERNS Received July 19, 2012; accepted September 11, 2012 WITA WARDANI, ARIEF HIDAYAT, DEDY DARNAEDI Herbarium Bogoriense, Botany Division, Research Center for Biology-LIPI, Cibinong Science Center, Jl. Raya Jakarta -Bogor Km. 46, Cibinong 16911, Indonesia. E-mail: [email protected] ABSTRACT. WARD AM, W., HIDAYAT, A. & DARNAEDI D. 2012. The new pteridophyte classification and sequence employed in the Herbarium Bogoriense (BO) for Malesian ferns. -
A Revised Family-Level Classification for Eupolypod II Ferns (Polypodiidae: Polypodiales)
TAXON — 11 May 2012: 19 pp. Rothfels & al. • Eupolypod II classification A revised family-level classification for eupolypod II ferns (Polypodiidae: Polypodiales) Carl J. Rothfels,1,7 Michael A. Sundue,2,7 Li-Yaung Kuo,3 Anders Larsson,4 Masahiro Kato,5 Eric Schuettpelz6 & Kathleen M. Pryer1 1 Department of Biology, Duke University, Box 90338, Durham, North Carolina 27708, U.S.A. 2 The Pringle Herbarium, Department of Plant Biology, University of Vermont, 27 Colchester Ave., Burlington, Vermont 05405, U.S.A. 3 Institute of Ecology and Evolutionary Biology, National Taiwan University, No. 1, Sec. 4, Roosevelt Road, Taipei, 10617, Taiwan 4 Systematic Biology, Evolutionary Biology Centre, Uppsala University, Norbyv. 18D, 752 36, Uppsala, Sweden 5 Department of Botany, National Museum of Nature and Science, Tsukuba 305-0005, Japan 6 Department of Biology and Marine Biology, University of North Carolina Wilmington, 601 South College Road, Wilmington, North Carolina 28403, U.S.A. 7 Carl J. Rothfels and Michael A. Sundue contributed equally to this work. Author for correspondence: Carl J. Rothfels, [email protected] Abstract We present a family-level classification for the eupolypod II clade of leptosporangiate ferns, one of the two major lineages within the Eupolypods, and one of the few parts of the fern tree of life where family-level relationships were not well understood at the time of publication of the 2006 fern classification by Smith & al. Comprising over 2500 species, the composition and particularly the relationships among the major clades of this group have historically been contentious and defied phylogenetic resolution until very recently. -
Corrections to Phytotaxa 19: Linear Sequence of Lycophytes and Ferns
Phytotaxa 28: 50–52 (2011) ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ Correction PHYTOTAXA Copyright © 2011 Magnolia Press ISSN 1179-3163 (online edition) Corrections to Phytotaxa 19: Linear sequence of lycophytes and ferns MAARTEN J.M. CHRISTENHUSZ1 & HARALD SCHNEIDER2 1Botany Unit, Finnish Museum of Natural History, Postbox 4, 00014 University of Helsinki, Finland. E-mail: [email protected] 2Department of Botany, The Natural History Museum, Cromwell Road, SW7 5BD London, U.K. E-mail: [email protected] After the publication of our A linear sequence of extant families and genera of lycophytes and ferns (Christenhusz, Zhang & Schneider 2011), a couple of errors were brought to our attention: Platyzoma placed in Pteris (Pteridaceae), and correcting erroneous combinations made in Pteris of Gleichenia species. In the New Combinations section on page 22, we attempted to provide new combinations for the genus Platyzoma R.Br., which is embedded in Pteris L. (Schuettpelz & Pryer 2007, Lehtonen 2011). When doing so, we made the unfortunate choice to follow the treatment of Platyzoma by Desvaux (1827), which included several additional species of Gleichenia, instead of the modern treatment of Platyzoma in which only the species Platyzoma microphyllum Brown (1810: 160) is included. Only that name needed to be transferred. This resulted in the creation of a number of unnecessary new names and combinations of Australasian Gleichenia, for which we apologise. We erroneously provided names in Pteris for Gleichenia dicarpa R.Br., G. alpina R.Br. and G. rupestris R.Br., which are all correctly placed in Gleichenia and not in Pteris. Therefore these new names are to be treated as synonyms. -
Fern Classification
16 Fern classification ALAN R. SMITH, KATHLEEN M. PRYER, ERIC SCHUETTPELZ, PETRA KORALL, HARALD SCHNEIDER, AND PAUL G. WOLF 16.1 Introduction and historical summary / Over the past 70 years, many fern classifications, nearly all based on morphology, most explicitly or implicitly phylogenetic, have been proposed. The most complete and commonly used classifications, some intended primar• ily as herbarium (filing) schemes, are summarized in Table 16.1, and include: Christensen (1938), Copeland (1947), Holttum (1947, 1949), Nayar (1970), Bierhorst (1971), Crabbe et al. (1975), Pichi Sermolli (1977), Ching (1978), Tryon and Tryon (1982), Kramer (in Kubitzki, 1990), Hennipman (1996), and Stevenson and Loconte (1996). Other classifications or trees implying relationships, some with a regional focus, include Bower (1926), Ching (1940), Dickason (1946), Wagner (1969), Tagawa and Iwatsuki (1972), Holttum (1973), and Mickel (1974). Tryon (1952) and Pichi Sermolli (1973) reviewed and reproduced many of these and still earlier classifica• tions, and Pichi Sermolli (1970, 1981, 1982, 1986) also summarized information on family names of ferns. Smith (1996) provided a summary and discussion of recent classifications. With the advent of cladistic methods and molecular sequencing techniques, there has been an increased interest in classifications reflecting evolutionary relationships. Phylogenetic studies robustly support a basal dichotomy within vascular plants, separating the lycophytes (less than 1 % of extant vascular plants) from the euphyllophytes (Figure 16.l; Raubeson and Jansen, 1992, Kenrick and Crane, 1997; Pryer et al., 2001a, 2004a, 2004b; Qiu et al., 2006). Living euphyl• lophytes, in turn, comprise two major clades: spermatophytes (seed plants), which are in excess of 260 000 species (Thorne, 2002; Scotland and Wortley, Biology and Evolution of Ferns and Lycopliytes, ed. -
Woodsiaceae (Pteridophyta)
Velázquez Montes,FLORA Ernesto / Onocleaceae DE GUERRERO 1 No. 79 Onocleaceae / Woodsiaceae (Pteridophyta) ERNESTO VELÁZQUEZ MONTES 2017 UNIVERSIDAD NACIONAL AU TÓNOMA DE MÉXICO FAC U LTAD DE CIENCIAS COMITÉ EDITORIAL Alan R. Smith Francisco Lorea Hernández University of California, Berkeley Instituto de Ecología A. C. Blanca Pérez García Leticia Pacheco Univ. Autónoma Metropolitana, Iztapalapa Univ. Autónoma Metropolitana, Iztapalapa Velázquez Montes, Ernesto, autor. Flora de Guerrero no. 79 : Onocleaceae/Woodsiaceae (Pteridophyta) / Ernesto Velázquez Montes. -- 1ª edición. -- México, D.F. : Universidad Nacional Autónoma de México, Facultad de Ciencias, 2017. 24 páginas : ilustraciones, mapas ; 28 cm. EDITORAS Incluye bibliografías Jaime Jiménez Ramírez, Rosa María Fonseca, Martha Martínez Gordillo ISBN 978-968-36-0765-2 (Obra completa) Facultad de Ciencias, UNAM ISBN 978-607-02-9877-6 (Fascículo) 1. Dryopteridaceae - Guerrero -- Identificación. 2. Pteridophyta -- Guerrero -- Identificación. 3. Pteridophyta -- Esporas -- Morfología. 4. Woodsia -- Guerrero -- Identificación. 5. Botánica -- Guerrero. I. La Flora de Guerrero es un proyecto del Laboratorio de Plantas Vasculares de la Facultad de Ciencias Universidad Nacional Autónoma de México. Facultad de Ciencias. II. de la U NAM . Tiene como objetivo inventariar las especies de plantas vasculares silvestres presentes en Título. III. Titulo: Onocleaceae/woodsiaceae (pteridophyta) Guerrero, México. El proyecto consta de dos series, la primera comprende las revisiones taxonómicas 580.97271-scdd21 Biblioteca Nacional de México de las familias presentes en el estado y será publicada con el nombre de Flora de Guerrero; la segun- da es la serie Estudios Florísticos que comprende las investigaciones florísticas realizadas en zonas particulares de la entidad. Flora de Guerrero is a project of the Plantas Vasculares Laboratory in the Facultad de Ciencias, U NAM . -
A Revised Family-Level Classification for Eupolypod II Ferns (Polypodiidae: Polypodiales)
TAXON 61 (3) • June 2012: 515–533 Rothfels & al. • Eupolypod II classification A revised family-level classification for eupolypod II ferns (Polypodiidae: Polypodiales) Carl J. Rothfels,1 Michael A. Sundue,2 Li-Yaung Kuo,3 Anders Larsson,4 Masahiro Kato,5 Eric Schuettpelz6 & Kathleen M. Pryer1 1 Department of Biology, Duke University, Box 90338, Durham, North Carolina 27708, U.S.A. 2 The Pringle Herbarium, Department of Plant Biology, University of Vermont, 27 Colchester Ave., Burlington, Vermont 05405, U.S.A. 3 Institute of Ecology and Evolutionary Biology, National Taiwan University, No. 1, Sec. 4, Roosevelt Road, Taipei, 10617, Taiwan 4 Systematic Biology, Evolutionary Biology Centre, Uppsala University, Norbyv. 18D, 752 36, Uppsala, Sweden 5 Department of Botany, National Museum of Nature and Science, Tsukuba 305-0005, Japan 6 Department of Biology and Marine Biology, University of North Carolina Wilmington, 601 South College Road, Wilmington, North Carolina 28403, U.S.A. Carl J. Rothfels and Michael A. Sundue contributed equally to this work. Author for correspondence: Carl J. Rothfels, [email protected] Abstract We present a family-level classification for the eupolypod II clade of leptosporangiate ferns, one of the two major lineages within the Eupolypods, and one of the few parts of the fern tree of life where family-level relationships were not well understood at the time of publication of the 2006 fern classification by Smith & al. Comprising over 2500 species, the composition and particularly the relationships among the major clades of this group have historically been contentious and defied phylogenetic resolution until very recently. Our classification reflects the most current available data, largely derived from published molecular phylogenetic studies. -
Phytochrome Diversity in Green Plants and the Origin of Canonical Plant Phytochromes
ARTICLE Received 25 Feb 2015 | Accepted 19 Jun 2015 | Published 28 Jul 2015 DOI: 10.1038/ncomms8852 OPEN Phytochrome diversity in green plants and the origin of canonical plant phytochromes Fay-Wei Li1, Michael Melkonian2, Carl J. Rothfels3, Juan Carlos Villarreal4, Dennis W. Stevenson5, Sean W. Graham6, Gane Ka-Shu Wong7,8,9, Kathleen M. Pryer1 & Sarah Mathews10,w Phytochromes are red/far-red photoreceptors that play essential roles in diverse plant morphogenetic and physiological responses to light. Despite their functional significance, phytochrome diversity and evolution across photosynthetic eukaryotes remain poorly understood. Using newly available transcriptomic and genomic data we show that canonical plant phytochromes originated in a common ancestor of streptophytes (charophyte algae and land plants). Phytochromes in charophyte algae are structurally diverse, including canonical and non-canonical forms, whereas in land plants, phytochrome structure is highly conserved. Liverworts, hornworts and Selaginella apparently possess a single phytochrome, whereas independent gene duplications occurred within mosses, lycopods, ferns and seed plants, leading to diverse phytochrome families in these clades. Surprisingly, the phytochrome portions of algal and land plant neochromes, a chimera of phytochrome and phototropin, appear to share a common origin. Our results reveal novel phytochrome clades and establish the basis for understanding phytochrome functional evolution in land plants and their algal relatives. 1 Department of Biology, Duke University, Durham, North Carolina 27708, USA. 2 Botany Department, Cologne Biocenter, University of Cologne, 50674 Cologne, Germany. 3 University Herbarium and Department of Integrative Biology, University of California, Berkeley, California 94720, USA. 4 Royal Botanic Gardens Edinburgh, Edinburgh EH3 5LR, UK. 5 New York Botanical Garden, Bronx, New York 10458, USA. -
Plastid Phylogenomics Resolve Deep Relationships Among Eupolypod II Ferns with Rapid Radiation and Rate Heterogeneity
GBE Plastid Phylogenomics Resolve Deep Relationships among Eupolypod II Ferns with Rapid Radiation and Rate Heterogeneity Ran Wei1, Yue-Hong Yan2, AJ Harris3, Jong-Soo Kang1,4, Hui Shen2, Qiao-Ping Xiang1,*, and Xian-Chun Zhang1 1State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, The Chinese Academy of Sciences, Beijing, P.R. China 2Shanghai Key Laboratory of Plant Functional Genomics and Resources, Shanghai Chenshan Botanical Garden, Shanghai Chenshan Plant Science Research Center, Chinese Academy of Sciences, Shanghai, P.R. China 3Department of Botany, Smithsonian Institution, National Museum of Natural History, Washington, District of Columbia 4University of Chinese Academy of Sciences, Beijing, P.R. China *Corresponding author: E-mail: [email protected]. Accepted: June 12, 2017 Data deposition: The genomes sequences have been deposited at GenBank under the accession numbers KY419703, KY419704, and KY427329ÀKY427359. The aligned data sets used in this study are deposited and publicly available at figshare.com (https://doi.org/10.6084/ m9.figshare.3968814; last accessed June 21, 2017 and https://doi.org/10.6084/m9.figshare.3840702; last accessed June 21, 2017). Abstract The eupolypods II ferns represent a classic case of evolutionary radiation and, simultaneously, exhibit high substitution rate hetero- geneity. These factors have been proposed to contribute to the contentious resolutions among clades within this fern group in multilocus phylogenetic studies. We investigated the deep phylogenetic relationships of eupolypod II ferns by sampling all major families and using 40 plastid genomes, or plastomes, of which 33 were newly sequenced with next-generation sequencing tech- nology. We performed model-based analyses to evaluate the diversity of molecular evolutionary rates for these ferns. -
The Marattiales and Vegetative Features of the Polypodiids We Now
VI. Ferns I: The Marattiales and Vegetative Features of the Polypodiids We now take up the ferns, order Marattiales - a group of large tropical ferns with primitive features - and subclass Polypodiidae, the leptosporangiate ferns. (See the PPG phylogeny on page 48a: Susan, Dave, and Michael, are authors.) Members of these two groups are spore-dispersed vascular plants with siphonosteles and megaphylls. A. Marattiales, an Order of Eusporangiate Ferns The Marattiales have a well-documented history. They first appear as tree ferns in the coal swamps right in there with Lepidodendron and Calamites. (They will feature in your second critical reading and writing assignment in this capacity!) The living species are prominent in some hot forests, both in tropical America and tropical Asia. They are very like the leptosporangiate ferns (Polypodiids), but they differ in having the common, primitive, thick-walled sporangium, the eusporangium, and in having a distinctive stele and root structure. 1. Living Plants Go with your TA to the greenhouse to view the potted Angiopteris. The largest of the Marattiales, mature Angiopteris plants bear fronds up to 30 feet in length! a.These plants, like all ferns, have megaphylls. These megaphylls are divided into leaflets called pinnae, which are often divided even further. The feather-like design of these leaves is common among the ferns, suggesting that ferns have some sort of narrow definition to the kinds of leaf design they can evolve. b. The leaflets are borne on stem-like axes called rachises, which, as you can see, have swollen bases on some of the plants in the lab. -
Diplaziopsidaceae (PDF)
This PDF version does not have an ISBN or ISSN and is not therefore effectively published (Melbourne Code, Art. 29.1). The printed version, however, was effectively published on 6 June 2013. He, Z. R. & M. Kato. 2013. Diplaziopsidaceae. Pp. 317–318 in Z. Y. Wu, P. H. Raven & D. Y. Hong, eds., Flora of China, Vol. 2–3 (Pteridophytes). Beijing: Science Press; St. Louis: Missouri Botanical Garden Press. DIPLAZIOPSIDACEAE 肠蕨科 chang jue ke He Zhaorong (和兆荣)1; Masahiro Kato2 Plants medium-sized or large, usually in forests near or beside streams. Rhizomes decumbent to erect, thick. Lamina 1-pinnate, imparipinnate, with pinnae entire, glabrous; veins free on either side of midrib, fully anastomosing toward margins and forming 2–4 rows of areoles, without included free veinlets. Sori elongate along long veins close to midrib, covered by a similarly elongate, mem- branous indusium; indusia usually 3–8 mm, sometimes up to 1–2 cm, arched, sausage-shaped. Spores with winglike fimbriate and echinate folds, or low perforate plain folds. x = 41, 40 or 31. Three genera and five species: tropical America, tropical, subtropical, and temperate Asia; one genus and three species in China. Based on molecular evidence (R. Sano et al., Molec. Phylogen. Evol. 15: 403–413. 2000; Wei et al., Acta Bot. Yunnan., suppl. 17: 46–54. 2010), the family Diplaziopsidaceae consisting of Diplaziopsis and Homalosorus Small ex Pichi Sermolli (and provisionally Hemidictyum C. Presl) was pro- posed by X. C. Zhang and Christenhusz (Phytotaxa 19: 15. 2011). Chu Wei-ming & He Zhao-rong. 1999. Diplaziopsis. In: Chu Wei-ming, ed., Fl.