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Methods for Monitoring Fish Communities of Buffalo National River and Ozark National Scenic Riverways in the Ozark Plateaus of Arkansas and Missouri: Version 1.0

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Methods for Monitoring Fish Communities of Buffalo National River and Ozark National Scenic Riverways in the Ozark Plateaus of Arkansas and Missouri: Version 1.0 Prepared in cooperation with the National Park Service Methods for Monitoring Fish Communities of Buffalo National River and Ozark National Scenic Riverways in the Ozark Plateaus of Arkansas and Missouri: Version 1.0 Open-File Report 2007-1302 U.S. Department of the Interior U.S. Geological Survey Methods for Monitoring Fish Communities of Buffalo National River and Ozark National Scenic Riverways in the Ozark Plateaus of Arkansas and Missouri: Version 1 By James C. Petersen, B.G. Justus, H.R. Dodd, D.E. Bowles, L.W. Morrison, M.H. Williams, and G.A. Rowell Prepared in cooperation with the National Park Service Open-File Report 2007-1302 U.S. Department of the Interior U.S. Geological Survey U.S. Department of the Interior DIRK KEMPTHORNE, Secretary U.S. Geological Survey Mark D. Myers, Director U.S. Geological Survey, Reston, Virginia: 2008 For product and ordering information: World Wide Web: http://www.usgs.gov/pubprod Telephone: 1-888-ASK-USGS For more information on the USGS--the Federal source for science about the Earth, its natural and living resources, natural hazards, and the environment: World Wide Web: http://www.usgs.gov Telephone: 1-888-ASK-USGS Any use of trade, product, or firm names is for descriptive purposes only and does not imply endorsement by the U.S. Government. Although this report is in the public domain, permission must be secured from the individual copyright owners to reproduce any copyrighted materials contained within this report. Suggested citation: Petersen, J.C., Justus, B.J., Dodd, H.R., Bowles, D.E., Morrison, L.W., Williams, M.H., and Rowell, G.A., 2008, Meth- ods for monitoring fish communities of Buffalo National River and Ozark National Scenic Riverways in the Ozark Pla- teaus of Arkansas and Missouri: Version 1: U.S. Geological Survey Open-File Report 2007-1302, 94 p. iii Contents Abstract ...........................................................................................................................................................1 Introduction.....................................................................................................................................................1 Protocol Narrative .........................................................................................................................................3 Background and Objectives ................................................................................................................3 Sampling Design ...................................................................................................................................4 Spatial Design...............................................................................................................................4 Establishing the Sample Frame ........................................................................................4 Selecting the Stretches to be Sampled ..........................................................................5 Mainstem..............................................................................................................................5 Tributaries ............................................................................................................................6 Establishing Sample Reaches ..........................................................................................6 Temporal Design ..........................................................................................................................6 Field Methods and Rationale ..............................................................................................................8 Data Management ..............................................................................................................................11 Analysis and Reporting ......................................................................................................................11 Analysis .......................................................................................................................................11 Reporting .....................................................................................................................................13 Personnel Requirements and Training ............................................................................................13 Operational Requirements ................................................................................................................14 Annual Workload and Field Schedule ....................................................................................14 Facility and Equipment Needs .................................................................................................14 Startup Costs and Budget Considerations ............................................................................14 Protocol Revision ................................................................................................................................14 Protocol for Monitoring Fish Communities ..............................................................................................15 SOP 1: Preparation Version 1.0 ........................................................................................................16 SOP 2: Training Version 1.0...............................................................................................................17 Sampling Efficiency and Consistency Considerations ........................................................17 Safety Considerations ...............................................................................................................17 SOP 3: Reach Selection Version 1.0 ...............................................................................................19 SOP 4: Documenting CORE 5 Water-Quality and Weather Conditions Version 1.0.................20 Discrete CORE 5 Sampling with Hand-Held Meters ............................................................20 Unattended CORE 5 Measurements with Data Logging Sondes .......................................20 Analysis and Reporting .............................................................................................................20 NPSTORET ..................................................................................................................................20 SOP 5: Fish Community Sampling Version 1.0 ...............................................................................21 Electrofishing Overview ............................................................................................................21 Seining Overview .......................................................................................................................22 Sampling Methods for Wadeable Streams ...........................................................................22 Electrofishing .....................................................................................................................22 Seining ................................................................................................................................24 Sampling Methods for Nonwadeable Streams ....................................................................25 Electrofishing .....................................................................................................................25 Seining ................................................................................................................................26 Sample Processing Procedures ..............................................................................................26 iv Quality Assurance/Quality Control Procedures ....................................................................27 SOP 6: Physical Habitat Collection Version 1.0 .............................................................................29 Habitat Collection ......................................................................................................................29 Instream Habitat Assessment .................................................................................................30 Fish Cover ....................................................................................................................................30 Bank Measurements .................................................................................................................30 SOP 7: Measuring Stream Discharge Version 1.0 ........................................................................33 Background Information ...........................................................................................................33 Preparation and Meter Calibration .........................................................................................33 Field Measurements ..................................................................................................................34 SOP 8: Equipment Maintenance and Storage Version 1.0 ..........................................................36 Water-Quality and Current Meters .........................................................................................36 Fish Sampling Equipment .........................................................................................................36 SOP 9: Data Management Version 1.0 ...........................................................................................38 Data Model..................................................................................................................................38
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