Actinomyces Actinomyces graevenitzii Pauljensenia Pauljensenia sp000411415

Actinomycetales Bifidobacterium bifidum Bifidobacterium dentium Bifidobacterium Bifidobacterium kashiwanohense_A Bifidobacterium pseudocatenulatum Micrococcaceae Rothia Micromonosporaceae Micromonospora

Actinobacteriota Mycobacteriales Lentzea Atopobiaceae CAG-1427 CAG-1427 sp000435675 Coriobacteriia Coriobacteriales Eggerthellaceae Eggerthella Enteroscipio Enteroscipio sp000270285 Bacteroides_B dorei Bacteroides_B Bacteroides_B sp002493165 Bacteroides eggerthii Bacteroides fluxus Bacteroides Bacteroides fragilis Bacteroides graminisolvens Bacteroides salyersiae CAG-462 sp003489705 CAG-462 CAG-462 sp900291465 CAG-617 Paraprevotella clara Paraprevotella Paraprevotella xylaniphila Bacteroidaceae Prevotella jejuni Prevotella maculosa Prevotella sp002300055 Prevotella sp002314055 Prevotella sp002353205 Prevotella Prevotella sp002394385 Prevotella sp002437115 Prevotella sp900315565 Prevotella sp900317685 Prevotella sp900318795 Prevotella sp900322035 Prevotellamassilia Prevotellamassilia sp002431845 RUG210 Coprobacteraceae Coprobacter Coprobacter secundus Marinifilaceae Butyricimonas Butyricimonas virosa Bacteroidales Marinilabiliaceae C941 C941 sp900318865 Muribaculaceae K10 K10 sp001941205 UBA3263 UBA3263 sp001689615 Phil12 Phil12 sp900315335 P3 UBA1711 Rikenellaceae Rikenella Rikenella microfusus

Bacteroidota Bacteroidia Parabacteroides Parabacteroides johnsonii Tannerellaceae Tannerella UBA11471 UBA11471 UBA11471 sp000434215 Bact-11 UBA932 CAG-831 WCHB1-69 RC9 RC9 sp002393945 Chitinophagales Chitinophagaceae Chitinophaga

Cytophagales Cyclobacteriaceae FlavobacterialesHymenobacteraceae Hymenobacter Campylobacteraceae Campylobacter_A Campylobacterota Campylobacteria Campylobacterales Helicobacteraceae Cyanobacteriia Cyanobacteriales Vampirovibrionia Gastranaerophilales Gastranaerophilaceae Zag1 Zag1 sp000437435 Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Desulfobacterota Syntrophia Syntrophales Bilophila Desulfobacterota_A Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio fairfieldensis Mailhella Desulfovibrio piger CAG-314 CAG-552 CAG-552 QALS01 QALS01 sp003150575 UBA10281 UBA10281 sp000437515 CAG-727 UBA1259 UBA1259 sp003523255 4C28d-15 UBA4636 UBA4636 sp002405915 UBA7597 UBA7597 sp003448195 CAG-1138 CAG-1138 sp000434675 CAG-917 CAG-475 CAG-475 sp002449145 CAG-475 sp002476605 CAG-1782 DTU072 DTU072 Firm-10 Firm-10 sp001603025 GCA-900199385 RUG563 CAG-138 CAG-74 UBA11524 UBA11524 sp000437595 UBA2862 UBA2862 sp900317565 UBA2943 UBA2943 sp002350845 Christensenellales Christensenella Christensenella minuta Christensenellaceae QANA01 QANA01 sp003149735 GCA-900066905 UBA1750 Clostridium_P Clostridiales Clostridiaceae Clostridium Clostridium sp001916075 Anaerotignaceae Anaerotignum Anaerotignum sp000436415 14-2 14-2 sp001940225 Acetatifactor muris Acetatifactor Acetatifactor sp900066365 Agathobacter rectale Agathobacter Agathobacter sp900317585 Anaerostipes Blautia_A sp900066335 Blautia_A Blautia_A sp900120195 Lachnospirales Blautia hansenii Blautia Blautia sp003287895 Butyrivibrio CAG-127 CAG-127 sp002404515 Clostridium_AI Clostridium_Q Clostridium_Q sp003024715 Coprococcus_B Coprococcus_B comes Coprococcus Coprococcus sp000154245 Dorea formicigenerans Dorea longicatena_B Lachnospiraceae Dorea Dorea sp900066765 Dorea sp900312975 Eubacterium_E hallii_A Eubacterium_E Eubacterium_E sp900016875 Eubacterium_F Eubacterium_I Eubacterium_I ramulus Faecalicatena glycyrrhizinilyticum Faecalicatena gnavus Faecalicatena Faecalicatena sp001487105 Faecalicatena torques Lachnoclostridium_A Lachnoclostridium_A sp002160755 Oribacterium Oribacterium sp900315665 Ruminococcus_A Ruminococcus_A sp000432335 TF01-11 TF01-11 sp003524945 UBA11774 UBA2882 UBA3282 UC5-1-2E3 UC5-1-2E3 sp001304875 An200 An200 sp002160025 CAG-177 CAG-177 sp000431775 Clostridia Marseille-P4683 Marseille-P4683 sp900232885 Acutalibacteraceae RUG762 Ruminococcus_E Ruminococcus_E bromii_A UBA1081 UBA5905 UBA5905 sp002431285 UBA737 UBA737 sp002431945 Agathobaculum Agathobaculum butyriciproducens

Butyricicoccaceae Butyricicoccus_A Butyricicoccus_A porcorum Butyricicoccus Butyricicoccus pullicaecorum UBA4644

CAG-390

CAG-272 CAG-448 CAG-448 sp003150135 CAG-841 UBA4717 UBA4717 sp002404395 UBA1206 UBA1206 sp000433115 CAG-382 UBA4717UCG-010 UCG-010 sp003150115

Oscillospirales CAG-103 CAG-103 sp000432375 CAG-110 sp000434635 CAG-110 CAG-110 sp002437585 CAG-110 sp900315595 CAG-170 sp000432135 Oscillospiraceae CAG-170 CAG-170 sp003516765 CAG-83 CAG-83 sp002438575 ER4 sp002437735 ER4 ER4 sp900317525 Sporobacter UBA1777 UBA1777 sp900319275

CAG-115 CAG-115 sp000432175 Firmicutes_A CAG-115 sp003531585 CAG-353 CAG-353 sp900066885 Fournierella Fournierella sp002161595 Massilioclostridium Negativibacillus Neobitarella QAMM01 Ruminiclostridium_E Ruminiclostridium_E sp002437415 Ruminococcaceae Ruminococcus_C callidus Ruminococcus_C Ruminococcus_C sp000437175 Ruminococcus_D Ruminococcus_D sp000434695 Ruminococcus flavefaciens_A Ruminococcus Ruminococcus sp002438605 Ruthenibacterium Ruthenibacterium sp003149955 UBA5884 UBA5884 sp002431975 CAG-145 CAG-145 sp000435615 Anaerovoracaceae Emergencia Peptostreptococcales Intestinibacter Intestinibacter bartlettii Peptostreptococcaceae Peptostreptococcus CAG-245 CAG-245 sp000434195 CAG-269 sp000437215 CAG-269 sp001915995 CAG-269 sp001916005 CAG-269 CAG-269 sp001916065 CAG-508 CAG-269 sp003518755 CAG-269 sp003525075

CAG-273 CAG-273 sp000437855 TANB77 CAG-273 sp000438355 CAG-492 CAG-492 sp002633185 CAG-793 CAG-793 sp000433915 UBA1234 UBA1234 Thermoanaerobacteria Thermoanaerobacterales Thermoanaerobacteraceae Firmicutes_B Peptococcia Peptococcales Peptococcaceae UBA7185 Acidaminococcales Acidaminococcaceae Phascolarctobacterium Phascolarctobacterium sp000436095 Firmicutes_C Negativicutes Phascolarctobacterium sp003150755 Firmicutes_E Veillonellales Veillonellaceae Veillonella Firmicutes_I Bacilli_A Brevibacillales Brevibacillaceae Brevibacillus_B Bacillaceae_D Bacillales Halobacillaceae_A Pontibacillus Erysipelatoclostridium Erysipelatoclostridium ramosum Erysipelatoclostridiaceae Kandleria Kandleria vitulina Sharpea Sharpea azabuensis Erysipelotrichales Absiella Absiella sp000165065 CAG-536 Erysipelotrichaceae Faecalicoccus Faecalicoccus pleomorphus Faecalitalea Faecalitalea cylindroides Solobacterium

Aerococcaceae Lactobacillus_C Lactobacillus_C paracasei Lactobacillaceae Lactobacillus_H Lactobacillus_H fermentum Lactobacillales Leuconostoc Listeriaceae Streptococcus mutans Bacilli Streptococcus sp000187445 Streptococcaceae Streptococcus Streptococcus suis Streptococcus vestibularis ML615J-28 CAG-313 CAG-313 CAG-313 sp003539625 CAG-460 sp000437315 CAG-460 CAG-460 sp002439555 CAG-1000 CAG-582 CAG-582 sp000435515 CAG-605 CAG-605 sp000433475 CAG-302 sp001916775 RF39 CAG-302 CAG-302 CAG-302 sp002375205 CAG-433 UBA2730 CAG-611 UBA3789 UBA3789 sp002369415 CAG-822 CAG-822 Gemellaceae Staphylococcales Staphylococcaceae Staphylococcus_A Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Myxococcota Polyangia Planctomycetota Pirellulales Beijerinckiaceae Methylobacterium Alphaproteobacteria Rhizobiales Devosiaceae Devosia Dakarella Dakarella massiliensis Burkholderiaceae Janthinobacterium Burkholderiales Ralstonia Neisseriaceae Neisseria Escherichia albertii Escherichia coli_D Escherichia Escherichia dysenteriae Alteromonadaceae Escherichia flexneri Enterobacteriaceae Klebsiella_A Klebsiella_A michiganensis Klebsiella Gammaproteobacteria Enterobacterales Salmonella Salmonella enterica Pasteurellaceae Haemophilus_D Haemophilus_D parainfluenzae_K Shewanellaceae Succinatimonas Succinatimonas hippei Succinivibrionaceae Succinivibrio Legionellales Legionellaceae Cellvibrionaceae Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter baumannii Oleiphilaceae Spirochaetota Leptospirae Leptospirales Lentisphaeria Victivallales UBA1829 UBA1829 UBA1829 sp002338895 Verrucomicrobiota Verrucomicrobiae Verrucomicrobiales Akkermansiaceae Akkermansia