Description of Morphological Characters of Wild Lactuca L. Spp. Genetic Resources (English-Czech Version)
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Genetic Resources Collections of Leafy Vegetables (Lettuce, Spinach, Chicory, Artichoke, Asparagus, Lamb's Lettuce, Rhubarb An
Genet Resour Crop Evol (2012) 59:981–997 DOI 10.1007/s10722-011-9738-x RESEARCH ARTICLE Genetic resources collections of leafy vegetables (lettuce, spinach, chicory, artichoke, asparagus, lamb’s lettuce, rhubarb and rocket salad): composition and gaps R. van Treuren • P. Coquin • U. Lohwasser Received: 11 January 2011 / Accepted: 21 July 2011 / Published online: 7 August 2011 Ó The Author(s) 2011. This article is published with open access at Springerlink.com Abstract Lettuce, spinach and chicory are gener- nl/cgn/pgr/LVintro/. Based on a literature study, an ally considered the main leafy vegetables, while a analysis of the gene pool structure of the crops was fourth group denoted by ‘minor leafy vegetables’ performed and an inventory was made of the distri- includes, amongst others, rocket salad, lamb’s lettuce, bution areas of the species involved. The results of asparagus, artichoke and rhubarb. Except in the case these surveys were related to the contents of the of lettuce, central crop databases of leafy vegetables newly established databases in order to identify the were lacking until recently. Here we report on the main collection gaps. Priorities are presented for update of the international Lactuca database and the future germplasm acquisition aimed at improving the development of three new central crop databases for coverage of the crop gene pools in ex situ collections. each of the other leafy vegetable crop groups. Requests for passport data of accessions available Keywords Chicory Á Crop database Á Germplasm to the user community were addressed to all known availability Á Lettuce Á Minor leafy vegetables Á European collection holders and to the main collec- Spinach tion holders located outside Europe. -
1 Introduction
National Strategy for the Conservation of Crop Wild Relatives of Spain María Luisa Rubio Teso, José M. Iriondo, Mauricio Parra & Elena Torres PGR Secure: Novel characterization of crop wild relative and landrace resources as a basis for improved crop breeding The research reported here was made possible with funding from the EU Seventh Framework Programme. PGR Secure is a collaborative project funded under the EU Seventh Framework Programme, THEME KBBE.2010.1.1-03, ‘Characterization of biodiversity resources for wild crop relatives to improve crops by breeding’, Grant Agreement no. 266394. The information published in this report reflects the views of PGR Secure partner, URJC. The European Union is not liable for any use that may be made of the information contained herein. Acknowledgements: We are grateful to Cristina Ronquillo Ferrero and Aarón Nebreda Trejo who collaborated in the process of data gathering and data analysis for the generation of this strategy. We are also grateful to Lori De Hond for her help with proof reading and linguistic assistance. Front Cover Picture: Lupinus angustifolius L., by Rubén Milla 2 Contents 1 Introduction ................................................................................................................... 5 2 Prioritization of Crop Wild Relatives in Spain ................................................................ 6 2.1 Introduction ............................................................................................................ 6 2.2 Methods ................................................................................................................. -
Wild Food Plants in Graecanic Communities in Calabria, Southern
Wild food plants in Graecanic communities in Calabria, Southern Italy - Ethnobotany, current role in Mediterranean diets, and antioxidant activity Thesis presented by Sabine M. Nebel for the degree of Doctor of Philosophy Centre for Pharmacognosy and Phytotherapy The School of Pharmacy University of London 2006 ’^OL OF " ProQuest Number: 10104805 All rights reserved INFORMATION TO ALL USERS The quality of this reproduction is dependent upon the quality of the copy submitted. In the unlikely event that the author did not send a complete manuscript and there are missing pages, these will be noted. Also, if material had to be removed, a note will indicate the deletion. uest. ProQuest 10104805 Published by ProQuest LLC(2016). Copyright of the Dissertation is held by the Author. All rights reserved. This work is protected against unauthorized copying under Title 17, United States Code. Microform Edition © ProQuest LLC. ProQuest LLC 789 East Eisenhower Parkway P.O. Box 1346 Ann Arbor, Ml 48106-1346 This thesis describes research conducted in the School of Pharmacy, University of London between 2002 and 2006 under the supervision of Prof. Michael Heinrich. I certify that the research described is original and that any parts of the work that have been conducted by collaboration are clearly indicated. I also certify that I have written all the text herein and have clearly indicated by suitable citation any part of this dissertation that has already appeared in publication. 7 / (^foC Signature Date Abstract Dietary patterns are changing rapidly all over the world. The body of available local food knowledge, which forms the basis of many local traditions, is decreasing dramatically. -
Suitability of Root and Rhizome Anatomy for Taxonomic
Scientia Pharmaceutica Article Suitability of Root and Rhizome Anatomy for Taxonomic Classification and Reconstruction of Phylogenetic Relationships in the Tribes Cardueae and Cichorieae (Asteraceae) Elisabeth Ginko 1,*, Christoph Dobeš 1,2,* and Johannes Saukel 1,* 1 Department of Pharmacognosy, Pharmacobotany, University of Vienna, Althanstrasse 14, Vienna A-1090, Austria 2 Department of Forest Genetics, Research Centre for Forests, Seckendorff-Gudent-Weg 8, Vienna A-1131, Austria * Correspondence: [email protected] (E.G.); [email protected] (C.D.); [email protected] (J.S.); Tel.: +43-1-878-38-1265 (C.D.); +43-1-4277-55273 (J.S.) Academic Editor: Reinhard Länger Received: 18 August 2015; Accepted: 27 May 2016; Published: 27 May 2016 Abstract: The value of root and rhizome anatomy for the taxonomic characterisation of 59 species classified into 34 genera and 12 subtribes from the Asteraceae tribes Cardueae and Cichorieae was assessed. In addition, the evolutionary history of anatomical characters was reconstructed using a nuclear ribosomal DNA sequence-based phylogeny of the Cichorieae. Taxa were selected with a focus on pharmaceutically relevant species. A binary decision tree was constructed and discriminant function analyses were performed to extract taxonomically relevant anatomical characters and to infer the separability of infratribal taxa, respectively. The binary decision tree distinguished 33 species and two subspecies, but only five of the genera (sampled for at least two species) by a unique combination of hierarchically arranged characters. Accessions were discriminated—except for one sample worthy of discussion—according to their subtribal affiliation in the discriminant function analyses (DFA). However, constantly expressed subtribe-specific characters were almost missing and even in combination, did not discriminate the subtribes. -
The Vascular Flora of Rarău Massif (Eastern Carpathians, Romania). Note Ii
Memoirs of the Scientific Sections of the Romanian Academy Tome XXXVI, 2013 BIOLOGY THE VASCULAR FLORA OF RARĂU MASSIF (EASTERN CARPATHIANS, ROMANIA). NOTE II ADRIAN OPREA1 and CULIŢĂ SÎRBU2 1 “Anastasie Fătu” Botanical Garden, Str. Dumbrava Roşie, nr. 7-9, 700522–Iaşi, Romania 2 University of Agricultural Sciences and Veterinary Medicine Iaşi, Faculty of Agriculture, Str. Mihail Sadoveanu, nr. 3, 700490–Iaşi, Romania Corresponding author: [email protected] This second part of the paper about the vascular flora of Rarău Massif listed approximately half of the whole number of the species registered by the authors in their field trips or already included in literature on the same area. Other taxa have been added to the initial list of plants, so that, the total number of taxa registered by the authors in Rarău Massif amount to 1443 taxa (1133 species and 310 subspecies, varieties and forms). There was signaled out the alien taxa on the surveyed area (18 species) and those dubious presence of some taxa for the same area (17 species). Also, there were listed all the vascular plants, protected by various laws or regulations, both internal or international, existing in Rarău (i.e. 189 taxa). Finally, there has been assessed the degree of wild flora conservation, using several indicators introduced in literature by Nowak, as they are: conservation indicator (C), threat conservation indicator) (CK), sozophytisation indicator (W), and conservation effectiveness indicator (E). Key words: Vascular flora, Rarău Massif, Romania, conservation indicators. 1. INTRODUCTION A comprehensive analysis of Rarău flora, in terms of plant diversity, taxonomic structure, biological, ecological and phytogeographic characteristics, as well as in terms of the richness in endemics, relict or threatened plant species was published in our previous note (see Oprea & Sîrbu 2012). -
An Empirical Assessment of a Single Family‐Wide Hybrid Capture Locus
APPLICATION ARTICLE An empirical assessment of a single family-wide hybrid capture locus set at multiple evolutionary timescales in Asteraceae Katy E. Jones1,14 , Tomáš Fér2 , Roswitha E. Schmickl2,3 , Rebecca B. Dikow4 , Vicki A. Funk5 , Sonia Herrando-Moraira6 , Paul R. Johnston7,8,9, Norbert Kilian1 , Carolina M. Siniscalchi10,11 , Alfonso Susanna6 , Marek Slovák2,12 , Ramhari Thapa10,11, Linda E. Watson13 , and Jennifer R. Mandel10,11 Manuscript received 27 February 2019; revision accepted PREMISE: Hybrid capture with high-throughput sequencing (Hyb-Seq) is a powerful tool for 5 September 2019. evolutionary studies. The applicability of an Asteraceae family-specific Hyb-Seq probe set and 1 Botanischer Garten und Botanisches Museum Berlin, Freie the outcomes of different phylogenetic analyses are investigated here. Universität Berlin, Königin-Luise-Str. 6–8, 14195 Berlin, Germany 2 Department of Botany, Faculty of Science, Charles University, METHODS: Hyb-Seq data from 112 Asteraceae samples were organized into groups at differ- Benátská 2, CZ 12800 Prague, Czech Republic ent taxonomic levels (tribe, genus, and species). For each group, data sets of non-paralogous 3 Institute of Botany, The Czech Academy of Sciences, Zámek 1, CZ loci were built and proportions of parsimony informative characters estimated. The impacts 25243 Průhonice, Czech Republic of analyzing alternative data sets, removing long branches, and type of analysis on tree reso- 4 Data Science Lab, Office of the Chief Information lution and inferred topologies were investigated in tribe Cichorieae. Officer, Smithsonian Institution, Washington, D.C. 20013-7012, USA RESULTS: Alignments of the Asteraceae family-wide Hyb-Seq locus set were parsimony infor- 5 Department of Botany, National Museum of Natural mative at all taxonomic levels. -
The Pennsylvania State University
The Pennsylvania State University The Graduate School Intercollege Graduate Degree Program in Plant Biology PHYLOGENOMIC ANALYSIS OF ANCIENT GENOME DUPLICATIONS IN THE HISTORY OF PLANTS A Dissertation in Plant Biology by Yuannian Jiao © 2011 Yuannian Jiao Submitted in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy December 2011 The dissertation of Yuannian Jiao was reviewed and approved* by the following: Claude dePamphilis Professor of Biology Dissertation Advisor Chair of Committee Hong Ma Professor of Biology John Carlson Professor of Molecular Genetics Webb Miller Professor of Comparative Genomics and Bioinformatics Naomi Altman Professor of Statistics Teh-hui Kao Chair of Plant Biology Graduate Program *Signatures are on file in the Graduate School iii ABSTRACT Whole-genome duplication (WGD), or polyploidy, followed by gene loss and diploidization, has generally been viewed as a primary source of material for the origin of evolutionary novelties. Most flowering plants have been shown to be ancient polyploids that have undergone one or more rounds of WGDs early in their evolution, and many lineages have since undergone additional, independent and more recent genome duplications. It was suggested that the paleopolyploidy events were crucial to the radiation and success of angiosperms, but evidence for proposed ancient genome duplications remains equivocal. Plant genomes are highly dynamic and usually go through intense structural rearrangements and gene loss following duplication. Old(er) WGDs can not -
Phylogenetic Relationships Within Lactuca L. (Asteraceae), Including African Species, Based on Chloroplast DNA Sequence Comparisons
Genet Resour Crop Evol DOI 10.1007/s10722-015-0332-5 RESEARCH ARTICLE Phylogenetic relationships within Lactuca L. (Asteraceae), including African species, based on chloroplast DNA sequence comparisons Zhen Wei . Shi-Xin Zhu . R. G. Van den Berg . Freek T. Bakker . M. Eric Schranz Received: 25 April 2015 / Accepted: 29 September 2015 Ó The Author(s) 2015. This article is published with open access at Springerlink.com Abstract Lettuce (Lactuca sativa L.) belongs to the maximum likelihood and Bayesian inference analyses. genus Lactuca L. and is an important vegetable world- Biogeographical, chromosomal and morphological wide. Over the past decades, there have been many character states were reconstructed over the Bayesian controversies about the phylogeny of Lactuca species tree topology. We conclude that Lactuca contains two due to their complex and diverse morphological distinct phylogenetic clades—the crop clade and the characters and insufficient molecular sampling. In this Pterocypsela clade. Other North American, Asian and study we provide the most extensive molecular widespread species either form smaller clades or mix phylogenetic reconstruction of Lactuca, including with the Melanoseris species. The newly sampled African wild species, using two chloroplast genes African endemic species probably should be treated as (ndhF and trnL-F). The sampling covers nearly 40 % a new genus. of the total endemic African Lactuca species and 34 % of the total Lactuca species. DNA sequences from all Keywords African Lactuca Á Lactuca phylogeny Á the subfamilies of Asteraceae in Genebank and those Lettuce Á ndhF Á Phylogenetic relationships Á trnL-F generated from Lactuca herbarium samples were used to establish the affiliation of Lactuca within Astera- caeae. -
Central European Vegetation
Plant Formations in the Central European BioProvince Peter Martin Rhind Central European Beech Woodlands Beech (Fagus sylvatica) woods form the natural climax over much of Central Europe where the soils are relatively dry and can extend well into the uplands in the more southern zones. In the north, however, around Sweden it is confined to the lowlands. Beech woodlands are often open with a poorly developed shrub layer, Characteristic ground layer species may include various helleborines such as Cephalanthera damasonium, C. longifolia and C. rubra and sedges such as Carex alba, whilst in others, grasses like Sesleria caerlea or Melica uniflora may predominate, but in some of the more acidic examples, Luzula luzuloides is likely to dominate. There are also a number of endemic ground layer species. For example, in Carpathian beech woods endemics such as Dentaria glandulosa (Brassicaceae), Symphytum cordata (Boraginaceae) and the fern Polystichum braunii (Dryopteridaceae) may be encountered. Fine examples of primeaval beech woods can be found in the limestone Alps of lower Austria including the famous ‘Rothwald’ on the southeastern slopes of Dürrentein near Lunz. These range in altitude from about 940-1480 m. Here the canopy is dominated by Fagus sylvatica together with Acer pseudoplatanus, Picea abies, Ulmus glabra, and on the more acidic soils by Abies alba. Typical shrubs include Daphne mezereum, Lonicera alpigena and Rubus hirtus. At ground level the herb layer is very rich supporting possibly up to a 100 species of vascular plants. Examples include Adenostyles alliariae, Asplenium viridis, Campanula scheuchzeri, Cardamine trifolia, Cicerbita alpina, Denteria enneaphyllos, Euphorbia amygdaloides, Galium austriacum, Homogyne alpina, Lycopodium annotinum, Mycelis muralis, Paris quadrifolia, Phyteuma spicata, Prenanthes purpurea, Senecio fuchsii, Valeriana tripteris, Veratrum album and the central European endemic Helliborus niger (Ranunculaceae). -
Plant Species Richness and Composition of a Habitat Island
Biodiversity Data Journal 8: e48704 doi: 10.3897/BDJ.8.e48704 Research Article Plant species richness and composition of a habitat island within Lake Kastoria and comparison with those of a true island within the protected Pamvotis lake (NW Greece) Alexandros Papanikolaou‡‡, Maria Panitsa ‡ Division of Plant Biology, Department of Biology, University of Patras, Patras, Greece Corresponding author: Maria Panitsa ([email protected]) Academic editor: Gianniantonio Domina Received: 22 Nov 2019 | Accepted: 07 Jan 2020 | Published: 15 Jan 2020 Citation: Papanikolaou A, Panitsa M (2020) Plant species richness and composition of a habitat island within Lake Kastoria and comparison with those of a true island within the protected Pamvotis lake (NW Greece). Biodiversity Data Journal 8: e48704. https://doi.org/10.3897/BDJ.8.e48704 Abstract Lake Kastoria is one of the potentially “ancient” Balkan lakes that has a great environmental importance and ecological value, attracts high touristic interest and is under various anthropogenic pressures. It belongs to a Natura 2000 Special Protection Area and a Site of Community Interest. The city of Kastoria is located at the western part of the lake and just next to it, towards the centre of the lake, is a peninsula, a habitat island. In the framework of research concerning the flora of lake islands of Greece, one of the main objectives of the present study is to fill a gap concerning plant species richness of the habitat island within the protected Lake Kastoria, which is surrounded by the lake except for its north-western part where the border of the city of Kastoria is located. -
Genetic Diversity and Evolution in Lactuca L. (Asteraceae)
Genetic diversity and evolution in Lactuca L. (Asteraceae) from phylogeny to molecular breeding Zhen Wei Thesis committee Promotor Prof. Dr M.E. Schranz Professor of Biosystematics Wageningen University Other members Prof. Dr P.C. Struik, Wageningen University Dr N. Kilian, Free University of Berlin, Germany Dr R. van Treuren, Wageningen University Dr M.J.W. Jeuken, Wageningen University This research was conducted under the auspices of the Graduate School of Experimental Plant Sciences. Genetic diversity and evolution in Lactuca L. (Asteraceae) from phylogeny to molecular breeding Zhen Wei Thesis submitted in fulfilment of the requirements for the degree of doctor at Wageningen University by the authority of the Rector Magnificus Prof. Dr A.P.J. Mol, in the presence of the Thesis Committee appointed by the Academic Board to be defended in public on Monday 25 January 2016 at 1.30 p.m. in the Aula. Zhen Wei Genetic diversity and evolution in Lactuca L. (Asteraceae) - from phylogeny to molecular breeding, 210 pages. PhD thesis, Wageningen University, Wageningen, NL (2016) With references, with summary in Dutch and English ISBN 978-94-6257-614-8 Contents Chapter 1 General introduction 7 Chapter 2 Phylogenetic relationships within Lactuca L. (Asteraceae), including African species, based on chloroplast DNA sequence comparisons* 31 Chapter 3 Phylogenetic analysis of Lactuca L. and closely related genera (Asteraceae), using complete chloroplast genomes and nuclear rDNA sequences 99 Chapter 4 A mixed model QTL analysis for salt tolerance in -
5. Tribe CICHORIEAE 菊苣族 Ju Ju Zu Shi Zhu (石铸 Shih Chu), Ge Xuejun (葛学军); Norbert Kilian, Jan Kirschner, Jan Štěpánek, Alexander P
Published online on 25 October 2011. Shi, Z., Ge, X. J., Kilian, N., Kirschner, J., Štěpánek, J., Sukhorukov, A. P., Mavrodiev, E. V. & Gottschlich, G. 2011. Cichorieae. Pp. 195–353 in: Wu, Z. Y., Raven, P. H. & Hong, D. Y., eds., Flora of China Volume 20–21 (Asteraceae). Science Press (Beijing) & Missouri Botanical Garden Press (St. Louis). 5. Tribe CICHORIEAE 菊苣族 ju ju zu Shi Zhu (石铸 Shih Chu), Ge Xuejun (葛学军); Norbert Kilian, Jan Kirschner, Jan Štěpánek, Alexander P. Sukhorukov, Evgeny V. Mavrodiev, Günter Gottschlich Annual to perennial, acaulescent, scapose, or caulescent herbs, more rarely subshrubs, exceptionally scandent vines, latex present. Leaves alternate, frequently rosulate. Capitulum solitary or capitula loosely to more densely aggregated, sometimes forming a secondary capitulum, ligulate, homogamous, with 3–5 to ca. 300 but mostly with a few dozen bisexual florets. Receptacle naked, or more rarely with scales or bristles. Involucre cylindric to campanulate, ± differentiated into a few imbricate outer series of phyllaries and a longer inner series, rarely uniseriate. Florets with 5-toothed ligule, pale yellow to deep orange-yellow, or of some shade of blue, including whitish or purple, rarely white; anthers basally calcarate and caudate, apical appendage elongate, smooth, filaments smooth; style slender, with long, slender branches, sweeping hairs on shaft and branches; pollen echinolophate or echinate. Achene cylindric, or fusiform to slenderly obconoidal, usually ribbed, sometimes compressed or flattened, apically truncate, attenuate, cuspi- date, or beaked, often sculptured, mostly glabrous, sometimes papillose or hairy, rarely villous, sometimes heteromorphic; pappus of scabrid [to barbellate] or plumose bristles, rarely of scales or absent.