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Host–Pathogen Interactions Between Xanthomonas Fragariae and Its Host Fragaria × Ananassa Investigated with a Dual RNA-Seq Analysis
microorganisms Article Host–Pathogen Interactions between Xanthomonas fragariae and Its Host Fragaria × ananassa Investigated with a Dual RNA-Seq Analysis 1, 2 1 1, Michael Gétaz y, Joanna Puławska , Theo H.M. Smits and Joël F. Pothier * 1 Environmental Genomics and Systems Biology Research Group, Institute of Natural Resource Sciences, Zurich University of Applied Sciences (ZHAW), CH-8820 Wädenswil, Switzerland; [email protected] (M.G.); [email protected] (T.H.S.) 2 Department of Phytopathology, Research Institute of Horticulture, 96-100 Skierniewice, Poland; [email protected] * Correspondence: [email protected]; Tel.: +41-58-934-53-21 Present address: Illumina Switzerland GmbH, CH-8008 Zurich, Switzerland. y Received: 22 July 2020; Accepted: 14 August 2020; Published: 18 August 2020 Abstract: Strawberry is economically important and widely grown, but susceptible to a large variety of phytopathogenic organisms. Among them, Xanthomonas fragariae is a quarantine bacterial pathogen threatening strawberry productions by causing angular leaf spots. Using whole transcriptome sequencing, the gene expression of both plant and bacteria in planta was analyzed at two time points, 12 and 29 days post inoculation, in order to compare the pathogen and host response between the stages of early visible and of well-developed symptoms. Among 28,588 known genes in strawberry and 4046 known genes in X. fragariae expressed at both time points, a total of 361 plant and 144 bacterial genes were significantly differentially expressed, respectively. The identified higher expressed genes in the plants were pathogen-associated molecular pattern receptors and pathogenesis-related thaumatin encoding genes, whereas the more expressed early genes were related to chloroplast metabolism as well as photosynthesis related coding genes. -
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Acta Sci. Pol. Hortorum Cultus, 19(1) 2020, 21–39 https://czasopisma.up.lublin.pl/index.php/asphc ISSN 1644-0692 e-ISSN 2545-1405 DOI: 10.24326/asphc.2020.1.3 ORIGINAL PAPER Accepted: 16.04.2019 ASSESSMENT OF PHYSIOLOGICAL AND MORPHOLOGICAL TRAITS OF PLANTS OF THE GENUS Fragaria UNDER CONDITIONS of water deficit – a study review Marta Rokosa , Małgorzata Mikiciuk West Pomeranian University of Technology in Szczecin Department of Plant Physiology and Biochemistry, Juliusza Słowackiego 17, 70-953 Szczecin, Poland ABSTRACT The genus Fragaria belongs to the Rosaceae family. The most popular representatives of this species are the strawberry (Fragaria × ananassa Duch.) and wild strawberry (Fragaria vesca L.), whose taste and health benefits are appreciated by a huge number of consumers. The cultivation of Fragaria plants is widespread around the world, with particular emphasis on the temperate climate zone. Increasingly occurring weather anomalies, including drought phenomena, cause immense losses in crop cultivation. The Fragaria plant species are very sensitive to drought, due to the shallow root system, large leaf area and the high water content of the fruit. There have been many studies on the influence of water deficit on the morphological, biochemical and physiological features of strawberries and wild strawberries. There is a lack of research summarizing the current state of knowledge regarding of specific species response to water stress. The aim of this study was to combine and compare data from many research carried out and indicate the direction of future research aimed at improving the resistance of Fragaria plants species to stress related to drought. -
Tesis Doctoral
UNIVERSIDAD DE CÓRDOBA FACULTAD DE CIENCIAS DEPARTAMENTO DE BIOQUÍMICA Y BIOLOGÍA MOLECULAR TESIS DOCTORAL "FUNCTIONAL CHARACTERIZATION OF STRAWBERRY ( FRAGARIA x ANANASSA ) FRUIT- SPECIFIC AND RIPENING-RELATED GENES INVOLVED IN AROMA AND ANTHOCHYANINS BIOSYNTHESIS" Memoria de Tesis Doctoral presentada por Guadalupe Cumplido Laso, Licenciada en Biología, para optar al grado de Doctor por la Universidad de Córdoba con la mención de Doctorado Internacional . Córdoba, Diciembre de 2012 TITULO: FUNCTIONAL CHARACTERIZATION OF STRAWBERRY (FRAGARIA x ANANASSA) FRUIT-SPECIFIC AND RIPENING-RELATED GENES INVOLVED IN AROMA AND ANTHOCHYANINS BIOSYNTHESIS AUTOR: GUADALUPE CUMPLIDO LASO © Edita: Servicio de Publicaciones de la Universidad de Córdoba. Campus de Rabanales Ctra. Nacional IV, Km. 396 A 14071 Córdoba www.uco.es/publicaciones [email protected] TÍTULO DE LA TESIS: “ Functional characterization of strawberry ( Fragaria x ananassa ) fruit-specific and ripening-related genes involved in aroma and anthocyanins biosynthesis ” DOCTORANDO/A: Guadalupe Cumplido Laso INFORME RAZONADO DEL/DE LOS DIRECTOR/ES DE LA TESIS (se hará mención a la evolución y desarrollo de la tesis, así como a trabajos y publicaciones derivados de la misma). La Lda. Guadalupe Cumplido Laso ha desarrollado en el seno del grupo BIO-278 liderado por el Dr. Juan Muñoz Blanco el trabajo de investigación llamado “ Functional characterization of strawberry ( Fragaria x ananassa ) fruit-specific and ripening- related genes involved in aroma and anthocyanins biosynthesis ” que constituye el tema de su tesis doctoral. Este trabajo de investigación ha sido dirigido y supervisado por el Dr. Juan Muñoz Blanco y la Dra. Rosario Blanco Portales, ambos miembros del Departamento de Bioquímica y Biología Molecular de la Universidad de Córdoba. -
Prosess 76.3832 Fjernstyrte Bommer, Stopplys, Variable Skilt, Rasvarslingsanlegg, Vindvarslingsanlegg Vest-Agder Distrikt
Statens vegvesen Vest-Agder distrikt Oppdatert 23.04.2012 Prosess 76.3832 Fjernstyrte bommer, stopplys, variable skilt, rasvarslingsanlegg, vindvarslingsanlegg Vest-Agder distrikt Type bom: Antall Stopplys (type): Styring: Riksveg Vegnr: Hp: Km: Side: Bom nr. Sted: Antall. Autom. Man. 2-lys 1-lys LED 27W 54W 60W 70W 75W 100W Annet Fjern Lokal Fabrikant: Bilde: Installert Merknad: Ev18 4 491 HS Bjørndalen 1 X X Came Type Variabelt skilt: Antall Stopp/varsellys (type): Styring: Riksveg Vegnr: Hp: Km: Side: Var. Skilt nr. Sted: Antall. Mekanisk Fiber LED 2-lys 1-lys LED 27W 54W 60W 70W 75W 100W Annet Fjern Lokal Fabrikant: Bilde: Installert Merknad: Ev18 3 1708 Begge sider Varoddbrua 2 X 2 X NorSkilt Ev39 Trafikkstasjon Rige 12 X 12 X X Euroskilt 2011 Ev39 Vesterveibroa 5 X X X Kommer 2012 Fylkesveg Fv.45 Kryss med Fv.468 1 stk Svartevann 1 X 2 X NorSkilt Type vindvars. med skilttype: Antall Stopplys (type): Styring: Riksveg Vegnr: Hp: Km: Side: Vindvarsl. Nr Sted: Antall. Mekanisk Fiber LED 2-lys 1-lys LED 27W 54W 60W 70W 75W 100W Annet Fjern Lokal Fabrikant: Bilde: Installert Merknad: HB066E-D2-V376-285 Oversikt Fjernstyrte bommer, stopplys, variable skilt, ras TUNNELER MED ELEKTRISKE INSTALLASJONER VEST-AGDER DISTRIKT Planlagt Vegnr: Vegtype Fra Hp: Fra km: Byggeår Lengde: Tunnelnavn: Tunnelklasse: Merknad gruppeutskift EV018 Riksveg 3 408 1994 2 x 350 Haumyrhei D 2 løp 2013 Ev018 Riksveg 4 990 2003/2004 2 x 1000 Oddernes F 2 løp 2015 Ev018 Riksveg 4 2433 2001 3000 Banehei F 2 løp + ramper 2014 Ev039 Riksveg 1 0366 Ukjent 221 Vestervegen C En veg 2015 Ingen planlagt Ev039 Riksveg 1 1483 Ukjent 299 Hannevika C En veg. -
3. Planbeskrivelse.Pdf
Planbeskrivelse Detaljregulering for SETESDALSVEIEN 90 m. fl. Plan nr 1549 09.09.2020 Bakgrunn EGG arkitektur AS har på vegne av Gumpen Bileiendom AS utarbeidet forslag til detaljreguleringsplan for Setesdalsveien 90 m. fl. i Kristiansand kommune. Detaljreguleringen har følgende hovedmål; • Sikre forutsigbarhet for mulige utvidelser av eksisterende næringsdrift. • Sikre forutsigbarhet og godt naboskap til boligområdet Klappane. • Vurdere trafikksituasjon og logistikk på næringsområdet, justering av avkjørselsvei fra Setesdalsveien og mulig stengning for gjennomkjøring gjennom Klappane. • Vurdere etablering av ladestasjoner for elektrisk drevne biler. Beskrivelse av dagens situasjon i planområdet Reguleringsområde – varsel om oppstart av reguleringsarbeider Planområdet ligger sentralt på Grim mellom Setesdalsveien og jernbanespor og består av etablert næringsområde Gumpens Auto Vest AS i nordvest og eksisterende småhusbebyggelse i sydøst. Med unntak av private hager rundt boligbebyggelsen og kommunalt lekeareal eksisterer det ingen større, sammenhengende vegetasjon i området. Grimsåsen og Elisenhøy syd for planområdet skygger noe for kveldssol vinterstid. Området har gode lys- og solforhold for øvrig. Setesdalsveien 90 m. fl. – planbeskrivelse. Sist revidert 09.09.2020 Side 1 av 15 Planområdet er bebygd med næringsbebyggelse og boligbebyggelse. Det er ikke registret kulturminner innenfor planområdet. Eksisterende bebyggelse består av næringsbebyggelse i 1 til 2 etasjer og parkeringsarealer. Øst for avkjørsel er det boligbebyggelse i inntil 2 etasjer og private hager. Næringsarealet er eiet av Gumpens Bileiendom AS og boligeiendommene er i hovedsak privat eiet. Setesdalsveien 86 er eiet av Gumpens Bileiendom AS, og har opsjon på kjøp av Klappane 13. Atkomstveien Klappane er kommunalt eiet. Planområdet sogner til Solholmen barneskole og Grim ungdomsskole som begge ligger med ca. 10 minutters gåavstand fra planområdet. -
Molecular Phylogenetics and Evolution 66 (2013) 17–29
Molecular Phylogenetics and Evolution 66 (2013) 17–29 Contents lists available at SciVerse ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Insights into phylogeny, sex function and age of Fragaria based on whole chloroplast genome sequencing ⇑ Wambui Njuguna a, , Aaron Liston b, Richard Cronn c, Tia-Lynn Ashman d, Nahla Bassil e a Department of Horticulture, Oregon State University, ALS 4017, Corvallis, OR 97331, USA b Department of Botany and Plant Pathology, Oregon State University, Cordley Hall 2082, Corvallis, OR 97331, USA c Pacific Northwest Research Station, United States Forest Service, 3200 SW Jefferson Way, Corvallis, OR 97331, USA d Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA e United States Department of Agriculture, Agricultural Research Service, National Clonal Germplasm Repository, Corvallis, OR 97333, USA article info abstract Article history: The cultivated strawberry is one of the youngest domesticated plants, developed in France in the 1700s Received 13 February 2012 from chance hybridization between two western hemisphere octoploid species. However, little is known Revised 20 August 2012 about the evolution of the species that gave rise to this important fruit crop. Phylogenetic analysis of Accepted 30 August 2012 chloroplast genome sequences of 21 Fragaria species and subspecies resolves the western North Ameri- Available online 14 September 2012 can diploid F. vesca subsp. bracteata as sister to the clade of octoploid/decaploid species. No extant tetrap- loids or hexaploids are directly involved in the maternal ancestry of the octoploids. Keywords: There is strong geographic segregation of chloroplast haplotypes in subsp. bracteata, and the gynodioe- Plastome cious Pacific Coast populations are implicated as both the maternal lineage and the source of male-ste- Polyploidy Self-compatibility rility in the octoploid strawberries. -
A STREAMLINED Synthetlc OCTOPLOID SYSTEM THAT
A STREAMLINED SYNTHETlC OCTOPLOID SYSTEM THAT EMPHASIZES FRAGARIA VESCA AS A BRIDGE SPEClES A Thesis Presented to The Faculty of Graduate Studies of The University of Guelph by ROBERT HAROLD BORS In partial fuifilment of requirements for the degree of Doctor of Philosophy Robert Bors O June, 2000 National Library Bibliothèque nationale l*m of Canada du Canada Acquisitions and Acquisitions et Bibliographie Services services bibliographiques 395 Wellington Street 395, nie Wellington OttawaON KIAON4 Ottawa ON K1 A ON4 Canada Canada The author has granted a non- L'auteur a accordé une licence non exclusive licence allowing the exclusive permettant à la National Library of Canada to Bibliothèque nationale du Canada de reproduce, loan, distribute or sel1 reproduire, prêter, distribuer ou copies of this thesis in microform, vendre des copies de cette thèse sous paper or electronic formats. la forme de microfiche/film, de reproduction sur papier ou sur format électronique. The author retains ownership of the L'auteur conserve la propriété du copyright in this thesis. Neither the droit d'auteur qui protège cette thèse. thesis nor substantial extracts fiom it Ni la thèse ni des extraits substantiels may be printed or otherwise de celle-ci ne doivent être imprimés reproduced without the author's ou autrement reproduits sans son permission. autorisation. ABSTRACT A STREAMLINEO SYNTHETIC OCTOPLOID SYSTEM T HAT EMPHASIZES FRAGAR~AVESCA AS A BRIDGE SPECIES Robert Harold Bors Advisor: 3. A. Sullivan University of Guelph. 2000 The synthetic octoploid (SO) system is a method of combining diploid, tetraploid and hexaploid Fragaha species into hybrid octoploids for introgression into octoploid strawberry cultivars of F.x ananassa. -
Normativt Arbeidsreiseomland Til Utvalgte Tettsteder Og Sentra. Del II
84 , dbr 8 OMAI AEISEISEOMA I UAGE ESEE 0G SEA E II ESAGE a Oe aga age IO Sd igrrtr ..r ...~.~...~.~.~~~....~...~....~.~^^~~.^~^~~~.~^~^~.`^~^.~^. aecegïae .................,..,,.,.......,.................. .. l I. Ieig ....... ,~,,~~,~,,~,~~~,,,,,~,,,,,~,,~..,,~...~........... 2 ^^ ^^ 2. Sesiee mekae o esAge ...~....~.......................... 2 1 IGUEGISE Sd . Arbdrlndn tl d tvlt ttttdnntrn tAdr. M : ll. 4 AEEGISE . ltll ttttdn nnnfr lndn tl d tvlt ttttdnntrn 3 2. Grnnrtr fllr nnnfr lndn tl d tvlt ttttdnntrn 9 . Grnnrtn ntrltt. Kn 2 4. Grnnrtr tnfr lndt tl d tvlt ttttdnntrn fltllt d. • Kn 2 e 2 . IEIG Sttt Sntrlbrå hr bd pp n rtdtbn d dt fr prdn rndt 80. Krt dtbnn btår frt n v dt fr fl bltllnn 80, lndbrtllnn nrtv rbdrlnd tl tvlt ttttdrntr. Arbdt d A b pp dnn t r jrt d tøtt fr Mljøvrndprtntt. tt nttt r n tbll frpbljn n vdrfrn v Intrn nttr nr. 82. rtvt rbdrlnd tl tvlt ttttdr ntr, l I. l I nnhldr n brvl vrdrn v td jnnførn v prjtt. l II vl bl tt t d t hft fr hvrt fl, d nnt v Arh Ol r lått n tl tt hft. Md nrtvt rbdrlnd n l ptbl dl rbdrvtnd. I dnn ndrøln r l rbdrvtnd tt tl 4 n. d vl v trnprtddl r vlt rt trnprtddl frttt tltrl hppht rl hø tndr. nlv r drfr prnbl nttt vd brnnn. thtn fr prnbl på rvn r ftlt v vntrn fln. r n å br ffntl trnprtdlr r tb fr r nttt. t r lt nn hthtbrnnnr fr vtrnnr prr ttttdr. rlt vl dt t n td A tl fr trnprtddlt n nttr. -
Pineberry: a Reintroduced Strawberry
Missouri February 2015 Volume 21, Number 2 Pineberry: A Reintroduced Strawberry White-fruited strawberries of Fragaria chiloensis (Chilean strawberry) have been traced back to Chile where the native peoples, the Picunche and the Mapuche, cultivated them more than 1000 years ago. Although uncommon, native white strawberries can still be found in southern Chile today. Although early explorers documented these strawberries, they were not introduced into Europe until 1712 when Lt. Colonel Amedee Frézier brought F. chiloensis plants to France. Thereafter, the Chilean strawberry was naturally pollinated by Fragaria virginiana (red-fruited type known as scarlets). More recently, Hans De Jongh, a grower in Etten-Leur, the Netherlands obtained a diseased pineberry plant from a strawberry plant collector in France, who believed it was from the original cross from the 18th century. After selecting plants over a six year period, De Johgh released his pineberry Photo credit: Chad Finn cultivar in 2009. For those who like novelty plants, pineberry (Fragaria chiloensis Pineberries should not be confused with the albino fruit x virginiana) is a hybrid strawberry that produces small, white, disorder of commonly-grown red-fruited strawberries. In highly aromatic fruit with red achenes (seeds) (Figure 1). While California, warm weather followed by cloudy and foggy skies it is marketed as a berry with pineapple-like flavpineberryor, can cause albino fruit with poor flavor. Albinism has also been not all may perceive this flavor. Pineberries are slightly larger associated with excessive nitrogen applications in of red-fruited than a dime and are soft. In The Netherlands, they are grown in strawberry cultivars including, Diamante, Chandler, Sweet greenhouses. -
15. Adresseliste.Pdf
PLAN OG BYGG Plan Saksnr: PLAN-20/02495 Saksbeh: E. Borgi Dato: 18.11.2020 Setesdalsveien 90 m.fl. - Offentlig ettersyn - Detaljregulering Planid 1549 Offentlige interesser og organisasjoner Adresse Postnr Poststed Kanal Matrikkelinfo Agder elbilforeningen Rådyrveien 22 4624 Kristiansand S SvarUT Agder energi nett AS Postboks 794 Stoa 4809 Arendal SvarUT Agder energi varme AS Postboks 603 Lund 4606 Kristiansand S SvarUT Agder Fylkeskommune v/Regionalavdelingen, Postboks 4809 Arendal SvarUT 788 Stoa Agder Kollektivtrafikk AS Tollbodgata 22 4611 Kristiansand S SvarUT Agder Politidistrikt Postboks 514 Lund 4605 Kristiansand S SvarUT Avfall Sør Husholdning AS Posboks 4094 4689 Kristiansand S SvarUT Bane NOR Eiendom AS Postboks 1800 Sentrum 0048 Oslo SvarUT Christianssands Byselskab Kronprinsensgate 59 4614 Kristiansand S SvarUT Eldrerådet v/Raimond Oseland, Postboks 4 4685 Nodeland E-post Fylkesmannen i Agder Postboks 788 Stoa 4809 Arendal SvarUT Kommuneoverlegen Postboks 4 4685 Nodeland E-post Kristiansandregionen brann og redning IKS Postboks 250 4663 Kristiansand S SvarUT Norges Handikapforbund Agder Vigeveien 15A 4633 Kristiansand S SvarUT Næringsforeningen I Kristiansandsregionen Postboks 269 4663 Kristiansand S SvarUT Rådet for funksjonshemmede v/Hanne Kro Sørborg, Postboks 4685 Nodeland E-post 4 Statens vegvesen region sør Postboks 723 Stoa 4808 Arendal SvarUT Studentråd v/Raimond Oseland, Postboks 4 4685 Nodeland E-post Ungdommens bystyre v/Hanne Kro Sørborg, Postboks 4685 Nodeland E-post 4 Grunneiere Askland Vigdis Paradisveien 7 -
Development and Use of Molecular Tools in Fragaria
AN ABSTRACT OF THE DISSERTATION OF Wambui Njuguna for the degree of Doctor of Philosophy in Horticulture presented on March 1, 2010. Title: Development and Use of Molecular Tools in Fragaria Abstract approved: Nahla V. Bassil This dissertation describes the application and development of molecular tools that have great potential for use in studying variation in strawberry germplasm. The first study evaluated 91 microsatellite (simple sequence repeat, SSR) markers for transferability in 22 Fragaria species and their utility in fingerprinting octoploid strawberries. Out of the transferable markers, a reduced set of four SSRs was developed based on polymorphism, multiplexing ability, reproducibility and ease of scoring. Unique SSR fingerprints were obtained for over 175 Fragaria samples representing 22 Fragaria species used in the study. Testing of two molecular markers linked to the red stele and anthracnose resistances identified potential sources of resistance in previously untested genotypes. Further characterization of these accessions is warranted to validate resistance and usefulness in breeding. In the second study, 20 SSRs polymorphic in wild Asian diploids, F. iinumae and F. nipponica, from Hokkaido, Japan were selected for genetic analysis of 137 accessions from 22 locations. Principal coordinate analysis followed by non-parametric modal clustering grouped accessions into two groups representing the two species. Further clustering within the groups resulted in 10 groups (7-F. iinumae, 3-F. nipponica) that suggest lineages representative of the diversity in Hokkaido, Japan. The third study tested plant DNA barcodes, the nuclear ribosomal Internal Transcribed and the chloroplast PsbA-trnH spacers, for Fragaria species identification. The ‘barcoding gap’, between within species and between species variation, was absent and prevented identification of Fragaria species. -
Og Boligtellingen 1980 Kristiansand. Grunnkretser Og Tettsteder
GUKESE OG ESEE OKUMEASO 80 00 KISIASA SAISISK SEAYÅ KOGSIGE FORORD Med bakgrunn i det økende behovet for ttt fr ndr rdr nnn nn på tvr v nrnn, trtt Sttt Sentralbyrå i 1976 arbeidet med en nrll, tbl kretsinndeling. Kretsene blir kalt rnnrtr fr nnå frvlnr d tdlr fltllnrtr trnd l vlrtr dr r pll bhv. Et vntl tpnt vr A nn dtljrt rf tt: t fr lndbrtllnn fl bltllnn 80, n hntn vr å A få n rf nht r nt fr lOpnd ttt. Utnpntt fr nndlnn hr vrt fltllnrtn 0, n d ått n tdr nø rvdr råd d nn fr bl bdr nt n nrll, rf bnht. rålt d dtt hftt r A dntr rtnndlnn ltt rbdt d nlr prt br v rtdt. t fr rnnrtr blr bl.. tljnl n nhftr fr l bltllnn 80. I d nlt nr Sttt Sntrlbrå fnn dt å frlp bflnntll pr. 80 fr rnnrtr. rnppn fr rtnndlnn bl tfrt jnn drOftnr d brr jnn t prOvpr6jt, r brvt t t ntt "ldnn vd nndln v nn rnnrtr". Sttt Sntrlbrå. t blr å tatt sikte på A drOfte erfaringer fra arbeidet og utviklingsperspektiver nrr et særskilt hefte. Utvlnn v GAtt (Grnnnd, Adr Bygningsregister) vl t rl vdlhld v bl.. t drrtr d dr fr rnn krets. Dette vil i framtida gi muligheter for bl.a. befolkningsstatistikk for rnnrtr, ltt vrtn nn. Grnnrtnndlnn l hrttr hld t l ft. t vl dlrtd nn fr fl rtrrnr. nvndlr l flrtrrnr søsmå om eeuee eige i gukesieige ska rettes til Fylkeskartkontoret i det aktuelle yke, som i a sake o me yåe.