Some Biochemical Changes in Heme Synthesis in Iron Deficiency
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Noncanonical Coproporphyrin-Dependent Bacterial Heme Biosynthesis Pathway That Does Not Use Protoporphyrin
Noncanonical coproporphyrin-dependent bacterial heme biosynthesis pathway that does not use protoporphyrin Harry A. Daileya,b,c,1, Svetlana Gerdesd, Tamara A. Daileya,b,c, Joseph S. Burcha, and John D. Phillipse aBiomedical and Health Sciences Institute and Departments of bMicrobiology and cBiochemistry and Molecular Biology, University of Georgia, Athens, GA 30602; dMathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL 60439; and eDivision of Hematology, Department of Medicine, University of Utah School of Medicine, Salt Lake City, UT 84132 Edited by J. Clark Lagarias, University of California, Davis, CA, and approved January 12, 2015 (received for review August 25, 2014) It has been generally accepted that biosynthesis of protoheme of a “primitive” pathway in Desulfovibrio vulgaris (13). This path- (heme) uses a common set of core metabolic intermediates that way, named the “alternative heme biosynthesis” path (or ahb), has includes protoporphyrin. Herein, we show that the Actinobacteria now been characterized by Warren and coworkers (15) in sulfate- and Firmicutes (high-GC and low-GC Gram-positive bacteria) are reducing bacteria. In the ahb pathway, siroheme, synthesized unable to synthesize protoporphyrin. Instead, they oxidize copro- from uroporphyrinogen III, can be further metabolized by suc- porphyrinogen to coproporphyrin, insert ferrous iron to make Fe- cessive demethylation and decarboxylation to yield protoheme (14, coproporphyrin (coproheme), and then decarboxylate coproheme 15) (Fig. 1 and Fig. S1). A similar pathway exists for protoheme- to generate protoheme. This pathway is specified by three genes containing archaea (15, 16). named hemY, hemH, and hemQ. The analysis of 982 representa- Current gene annotations suggest that all enzymes for pro- tive prokaryotic genomes is consistent with this pathway being karyotic heme synthetic pathways are now identified. -
Metabolism of the Stimulated Rat Spleen: I. Ferrochelatase Activity As an Index of Tissue Erythropoiesis
Metabolism of the stimulated rat spleen: I. Ferrochelatase activity as an index of tissue erythropoiesis Abraham Mazur J Clin Invest. 1968;47(10):2230-2238. https://doi.org/10.1172/JCI105908. Assay of the enzyme ferrochelatase in marrow, liver, spleen, and red cells has been employed to assess the extent of erythropoietic stimulation in animals bearing the Walker 256 carcinosarcoma and in rats treated by administration of phenylhydrazine, cobalt chloride, human urinary erythropoietin, or chronic blood loss. In all instances, the spleen sustains the most marked increase of ferrochelatase activity, per gram of tissue. Spleen erythropoietic activity stimulation was confirmed by quantitative measurements in respiring slices of 59Fe and 14C incorporation into hemoglobin and ferritin. Increased spleen ferrochelatase activity in cobalt chloride-treated rats is prevented by actinomycin D, indicating that stimulated synthesis of the enzyme is associated with the metabolism of RNA. Find the latest version: https://jci.me/105908/pdf Metabolism of the Stimulated Rat Spleen I. FERROCHELATASE ACTIVITY AS AN INDEX OF TISSUE ERYTHROPOIESIS ABRAHAM MAZUR From The New York Blood Center, New York 10021 A B S TR A C T Assay of the enzyme ferrochelatase examination or the measurement of incorporation in marrow, liver, spleen, and red cells has been of injected 59Fe into the tissues (4). In addition, employed to assess the extent of erythropoietic other splenic cells (reticuloendothelial cells) may stimulation in animals bearing the Walker 256 car- hypertrophy, e.g., in response to phenylhydrazine cinosarcoma and in rats treated by administration administration (5). of phenylhydrazine, cobalt chloride, human urinary Because the entire spleen is readily available, erythropoietin, or chronic blood loss. -
A Framework for Application of Metabolic Modeling in Yeast to Predict the Effects of Nssnv in Human Orthologs Hayley Dingerdissen George Washington University
Himmelfarb Health Sciences Library, The George Washington University Health Sciences Research Commons Biochemistry and Molecular Medicine Faculty Biochemistry and Molecular Medicine Publications 6-3-2014 A framework for application of metabolic modeling in yeast to predict the effects of nsSNV in human orthologs Hayley Dingerdissen George Washington University Daniel S. Weaver SRI International Menlo Park, Menlo Park, CA Peter D. Karp SRI International Menlo Park, Menlo Park, CA Yang Pan George Washington University Vahan Simonyan US Food and Drug Administration, Rockville, MD See next page for additional authors Follow this and additional works at: http://hsrc.himmelfarb.gwu.edu/smhs_biochem_facpubs Part of the Biochemistry, Biophysics, and Structural Biology Commons Recommended Citation Dingerdissen, H., Weaver, D.S., Karp, P.D., Pan, Y., Simonyan, V. et al. (2014). A framework for application of metabolic modeling in yeast to predict the effects of nsSNV in human orthologs. Biology Direct, 9:9. This Journal Article is brought to you for free and open access by the Biochemistry and Molecular Medicine at Health Sciences Research Commons. It has been accepted for inclusion in Biochemistry and Molecular Medicine Faculty Publications by an authorized administrator of Health Sciences Research Commons. For more information, please contact [email protected]. Authors Hayley Dingerdissen, Daniel S. Weaver, Peter D. Karp, Yang Pan, Vahan Simonyan, and Raja Mazumder This journal article is available at Health Sciences Research Commons: http://hsrc.himmelfarb.gwu.edu/smhs_biochem_facpubs/ -
Biliverdin Reductase: a Major Physiologic Cytoprotectant
Biliverdin reductase: A major physiologic cytoprotectant David E. Baran˜ ano*, Mahil Rao*, Christopher D. Ferris†, and Solomon H. Snyder*‡§¶ Departments of *Neuroscience, ‡Pharmacology and Molecular Sciences, and §Psychiatry and Behavioral Sciences, The Johns Hopkins University School of Medicine, Baltimore, MD 21205; and †Department of Medicine, Division of Gastroenterology, C-2104 Medical Center North, Vanderbilt University Medical Center, Nashville, TN 37232-2279 Contributed by Solomon H. Snyder, October 16, 2002 Bilirubin, an abundant pigment that causes jaundice, has long hypothesize that bilirubin acts in a catalytic fashion whereby lacked any clear physiologic role. It arises from enzymatic reduction bilirubin oxidized to biliverdin is rapidly reduced back to bili- by biliverdin reductase of biliverdin, a product of heme oxygenase rubin, a process that could readily afford 10,000-fold amplifica- activity. Bilirubin is a potent antioxidant that we show can protect tion (13). Here we establish that a redox cycle based on BVRA cells from a 10,000-fold excess of H2O2. We report that bilirubin is activity provides physiologic cytoprotection as BVRA depletion a major physiologic antioxidant cytoprotectant. Thus, cellular de- exacerbates the formation of reactive oxygen species (ROS) and pletion of bilirubin by RNA interference markedly augments tissue augments cell death. levels of reactive oxygen species and causes apoptotic cell death. Depletion of glutathione, generally regarded as a physiologic Methods antioxidant cytoprotectant, elicits lesser increases in reactive ox- All chemicals were obtained from Sigma unless otherwise ygen species and cell death. The potent physiologic antioxidant indicated. actions of bilirubin reflect an amplification cycle whereby bilirubin, acting as an antioxidant, is itself oxidized to biliverdin and then Cell Culture and Viability Measurements. -
Heme Synthesis Inhibition Blocks Angiogenesis Via Mitochondrial Dysfunction
bioRxiv preprint doi: https://doi.org/10.1101/836304; this version posted November 9, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Heme synthesis inhibition blocks angiogenesis via mitochondrial dysfunction Trupti Shetty,a,b Kamakshi Sishtla,a Bomina Park,a,b Matthew J. Repass,c,e Timothy W. Corsona,b,d,e* aEugene and Marilyn Glick Eye Institute, Department of Ophthalmology, Indiana University School of Medicine, Indianapolis, IN 46202, USA bDepartment of Pharmacology & Toxicology, Indiana University School of Medicine, Indianapolis, IN 46202, USA cAngio BioCore, Indiana University School of Medicine, Indianapolis, IN 46202, USA dDepartment of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN 46202, USA eMelvin and Bren Simon Cancer Center, Indiana University School of Medicine, Indianapolis, IN 46202, USA *For correspondence: [email protected] Keywords heme; angiogenesis; endothelial; retina; mitochondria; complex IV; ferrochelatase; glycolysis; neovascularization Author Contributions Conceptualization, T.S. and T.W.C.; Investigation, T.S., K.S., B.P., and M.J.R.; Formal Analysis and Visualization, T.S.; Writing – Original Draft, T.S.; Writing – Review & Editing, T.S, K.S., B.P., M.J.R., and T.W.C.; Funding Acquisition, T.W.C. bioRxiv preprint doi: https://doi.org/10.1101/836304; this version posted November 9, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
Structural and Functional Studies of the Light-Dependent Protochlorophyllide Oxidoreductase Enzyme
Structural and Functional Studies of the Light-Dependent Protochlorophyllide Oxidoreductase Enzyme David Robert Armstrong Department of Molecular Biology and Biotechnology A thesis submitted for the degree of Doctor of Philosophy September 2014 Abstract The light-dependent enzyme protochlorophyllide oxidoreductase (POR) is a key enzyme in the chlorophyll biosynthesis pathway, catalysing the reduction of the C17 - C18 bond in protochlorophyllide (Pchlide) to form chlorophyllide (Chlide). This reaction involves the light- induced transfer of a hydride from the nicotinamide adenine dinucleotide phosphate (NADPH) cofactor, followed by proton transfer from a catalytic tyrosine residue. Much work has been done to elucidate the catalytic mechanism of POR, however little is known about the protein structure. POR isoforms in plants are also notable as components of the prolamellar bodies (PLBs), large paracrystalline structures that are precursors to the thylakoid membranes in mature chloroplasts. Bioinformatics studies have identified a number of proteins, related to POR, which contain similar structural features, leading to the production of a structural model for POR. A unique loop region of POR was shown by EPR to be mobile, with point mutations within this region causing a reduction in enzymatic activity. Production of a 2H, 13C, 15N-labelled sample of POR for NMR studies has enabled significant advancement in the understanding of the protein structure. This includes the calculation of backbone torsion angles for the majority of the protein, in addition to the identification of multiple dynamic regions of the protein. The protocol for purification of Pchlide, the substrate for POR, has been significantly improved, providing high quality pigment for study of the POR ternary complex. -
Significance of Heme and Heme Degradation in the Pathogenesis Of
International Journal of Molecular Sciences Review Significance of Heme and Heme Degradation in the Pathogenesis of Acute Lung and Inflammatory Disorders Stefan W. Ryter Proterris, Inc., Boston, MA 02118, USA; [email protected] Abstract: The heme molecule serves as an essential prosthetic group for oxygen transport and storage proteins, as well for cellular metabolic enzyme activities, including those involved in mitochondrial respiration, xenobiotic metabolism, and antioxidant responses. Dysfunction in both heme synthesis and degradation pathways can promote human disease. Heme is a pro-oxidant via iron catalysis that can induce cytotoxicity and injury to the vascular endothelium. Additionally, heme can modulate inflammatory and immune system functions. Thus, the synthesis, utilization and turnover of heme are by necessity tightly regulated. The microsomal heme oxygenase (HO) system degrades heme to carbon monoxide (CO), iron, and biliverdin-IXα, that latter which is converted to bilirubin-IXα by biliverdin reductase. Heme degradation by heme oxygenase-1 (HO-1) is linked to cytoprotection via heme removal, as well as by activity-dependent end-product generation (i.e., bile pigments and CO), and other potential mechanisms. Therapeutic strategies targeting the heme/HO-1 pathway, including therapeutic modulation of heme levels, elevation (or inhibition) of HO-1 protein and activity, and application of CO donor compounds or gas show potential in inflammatory conditions including sepsis and pulmonary diseases. Keywords: acute lung injury; carbon monoxide; heme; heme oxygenase; inflammation; lung dis- ease; sepsis Citation: Ryter, S.W. Significance of Heme and Heme Degradation in the Pathogenesis of Acute Lung and Inflammatory Disorders. Int. J. Mol. 1. Introduction Sci. -
Pharmacological and Clinical Aspects of Heme Oxygenase
Supplemental Material can be found at: http://pharmrev.aspetjournals.org/cgi/content/full/pr.107.07104/DC1 0031-6997/08/6001-79–127$20.00 PHARMACOLOGICAL REVIEWS Vol. 60, No. 1 Copyright © 2008 by The American Society for Pharmacology and Experimental Therapeutics 7104/3331534 Pharmacol Rev 60:79–127, 2008 Printed in U.S.A Pharmacological and Clinical Aspects of Heme Oxygenase NADER G. ABRAHAM AND ATTALLAH KAPPAS New York Medical College, Department of Pharmacology and Medicine, Valhalla, New York (N.G.A.); and Rockefeller University Hospital, New York, New York (N.G.A., A.K.) Abstract ................................................................................ 80 I. Introduction ............................................................................. 80 II. Heme degradative pathway ............................................................... 81 A. Characterization of heme oxygenase .................................................... 81 Downloaded from B. Heme oxygenase isozymes ............................................................. 81 C. Heme oxygenase and the heme pool .................................................... 83 D. Heme oxygenase-NADPH-biliverdin reductase ........................................... 84 III. Pathophysiology of and clinical role of heme oxygenase-1/heme oxygenase-2: reaction products . 84 A. Increased levels of heme oxygenase-1 and heme oxygenase activity ........................ 84 pharmrev.aspetjournals.org 1. Acute effects .................................................................... -
Analysis of Heme Biosynthetic Pathways in a Recombinant Escherichia Coli S Stephanie Pranawidjaja1,2, Su-In Choi1, Bibiana W
J. Microbiol. Biotechnol. (2015), 25(6), 880–886 http://dx.doi.org/10.4014/jmb.1411.11050 Research Article Review jmb Analysis of Heme Biosynthetic Pathways in a Recombinant Escherichia coli S Stephanie Pranawidjaja1,2, Su-In Choi1, Bibiana W. Lay2, and Pil Kim1* 1Department of Biotechnology, the Catholic University of Korea, Bucheon 420-742, Republic of Korea 2Faculty of Biotechnology, Atma Jaya Catholic University of Indonesia, Jakarta Selatan 12930, Indonesia Received: November 18, 2014 Revised: December 18, 2014 Bacterial heme was produced from a genetic-engineered Escherichia coli via the porphyrin Accepted: December 22, 2014 pathway and it was useful as an iron resource for animal feed. The amount of the E. coli- synthesized heme, however, was only few milligrams in a culture broth and it was not enough for industrial applications. To analyze heme biosynthetic pathways, an engineered E. coli First published online artificially overexpressing ALA synthase (hemA from Rhodobacter sphaeroides) and pantothenate December 24, 2014 kinase (coaA gene from self geneome) was constructed as a bacterial heme-producing strain, *Corresponding author and both the transcription levels of pathway genes and the intermediates concentrations were Phone: +82-2-2164-4922; determined from batch and continuous cultures. Transcription levels of the pathway genes Fax: +82-2-2164-4865; were not significantly changed among the tested conditions. Intracellular intermediate E-mail: [email protected] concentrations indicated that aminolevulinic acid (ALA) and coenzyme A (CoA) were enhanced by the hemA-coaA co-expression. Intracellular coproporphyrinogen I and protoporphyrin IX accumulation suggested that the bottleneck steps in the heme biosynthetic S upplementary data for this paper are available on-line only at pathway could be the spontaneous conversion of HMB to coproporphyrinogen I and the http://jmb.or.kr. -
Kent Academic Repository Full Text Document (Pdf)
Kent Academic Repository Full text document (pdf) Citation for published version Dailey, Harry A. and Dailey, Tamara A. and Gerdes, Svetlana and Jahn, Dieter and Jahn, Martina and O'Brian, Mark R. and Warren, Martin J. (2017) Prokaryotic Heme Biosynthesis: Multiple Pathways to a Common Essential Product. Review of: Prokaryotic Heme Biosynthesis: Multiple Pathways to a Common Essential Product by UNSPECIFIED. Microbiology and Molecular DOI https://doi.org/10.1128/MMBR.00048-16 Link to record in KAR http://kar.kent.ac.uk/60615/ Document Version Publisher pdf Copyright & reuse Content in the Kent Academic Repository is made available for research purposes. Unless otherwise stated all content is protected by copyright and in the absence of an open licence (eg Creative Commons), permissions for further reuse of content should be sought from the publisher, author or other copyright holder. Versions of research The version in the Kent Academic Repository may differ from the final published version. Users are advised to check http://kar.kent.ac.uk for the status of the paper. Users should always cite the published version of record. Enquiries For any further enquiries regarding the licence status of this document, please contact: [email protected] If you believe this document infringes copyright then please contact the KAR admin team with the take-down information provided at http://kar.kent.ac.uk/contact.html REVIEW crossm Prokaryotic Heme Biosynthesis: Multiple Pathways to a Common Essential Product Downloaded from Harry A. Dailey,a Tamara A. Dailey,a Svetlana Gerdes,b Dieter Jahn,c Martina Jahn,d Mark R. -
A Cis-Carotene Derived Apocarotenoid Regulates Etioplast And
RESEARCH ARTICLE A cis-carotene derived apocarotenoid regulates etioplast and chloroplast development Christopher I Cazzonelli1†*, Xin Hou2†, Yagiz Alagoz1, John Rivers2, Namraj Dhami1, Jiwon Lee3, Shashikanth Marri2, Barry J Pogson2* 1Hawkesbury Institute for the Environment, Western Sydney University, Penrith, Australia; 2Research School of Biology, The Australian National University, Canberra, Australia; 3Centre for Advanced Microscopy, The Australian National University, Canberra, Australia Abstract Carotenoids are a core plastid component and yet their regulatory function during plastid biogenesis remains enigmatic. A unique carotenoid biosynthesis mutant, carotenoid chloroplast regulation 2 (ccr2), that has no prolamellar body (PLB) and normal PROTOCHLOROPHYLLIDE OXIDOREDUCTASE (POR) levels, was used to demonstrate a regulatory function for carotenoids and their derivatives under varied dark-light regimes. A forward genetics approach revealed how an epistatic interaction between a z-carotene isomerase mutant (ziso-155) and ccr2 blocked the biosynthesis of specific cis-carotenes and restored PLB formation in etioplasts. We attributed this to a novel apocarotenoid retrograde signal, as chemical inhibition of carotenoid cleavage dioxygenase activity restored PLB formation in ccr2 etioplasts during skotomorphogenesis. The apocarotenoid acted in parallel to the repressor of *For correspondence: [email protected]. photomorphogenesis, DEETIOLATED1 (DET1), to transcriptionally regulate au (CIC); PROTOCHLOROPHYLLIDE OXIDOREDUCTASE -
Heme: a Versatile Signaling Molecule Controlling the Activities of Diverse Regulators Ranging from Transcription Factors to MAP Kinases
Sarah M Mense and Li Zhang npg Cell Research (2006): 681-692 npg681 © 2006 IBCB, SIBS, CAS All rights reserved 1001-0602/06 $ 30.00 REVIEW www.nature.com/cr Heme: a versatile signaling molecule controlling the activities of diverse regulators ranging from transcription factors to MAP kinases Sarah M Mense1, Li Zhang1 1Department of Environmental Health Sciences, Columbia University, Mailman School of Public Health, 60 Haven Avenue, B-106, New York, NY 10032, USA Heme (iron protoporphyrin IX) is an essential molecule for numerous living organisms. Not only does it serve as a prosthetic group in enzymes, it also acts as a signaling molecule that controls diverse molecular and cellular processes ranging from signal transduction to protein complex assembly. Deficient heme synthesis or function impacts the hema- topoietic, hepatic and nervous systems in humans. Recent studies have revealed a series of heme-regulated transcription factors and signal transducers including Hap1, a heme-activated transcription factor that mediates the effects of oxygen on gene transcription in the yeast Saccharomyces cerevisiae; Bach1, a transcriptional repressor that is negatively regu- lated by heme in mammalian cells; IRR, an iron regulatory protein that mediates the iron-dependant regulation of heme synthesis in the bacterium Bradyrhizobium japonicum; and heme-regulated inhibitor, an eucaryotic initiation factor 2a kinase that coordinates protein synthesis with heme availability in reticulocytes. In this review, we summarize the current knowledge about how heme controls the activity of these transcriptional regulators and signal transducers, and discuss diseases associated with defective heme synthesis, degradation and function. Cell Research (2006) 16:681-692.