Betting & Hierarchy in Paleontology
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Distributions of Extinction Times from Fossil Ages and Tree Topologies: the Example of Some Mid-Permian Synapsid Extinctions Gilles Didier, Michel Laurin
Distributions of extinction times from fossil ages and tree topologies: the example of some mid-Permian synapsid extinctions Gilles Didier, Michel Laurin To cite this version: Gilles Didier, Michel Laurin. Distributions of extinction times from fossil ages and tree topologies: the example of some mid-Permian synapsid extinctions. 2021. hal-03258099v2 HAL Id: hal-03258099 https://hal.archives-ouvertes.fr/hal-03258099v2 Preprint submitted on 20 Sep 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributions of extinction times from fossil ages and tree topologies: the example of some mid-Permian synapsid extinctions Gilles Didier1 and Michel Laurin2 1 IMAG, Univ Montpellier, CNRS, Montpellier, France 2 CR2P (\Centre de Pal´eontologie { Paris"; UMR 7207), CNRS/MNHN/SU, Mus´eumNational d'Histoire Naturelle, Paris, France September 16, 2021 Abstract Given a phylogenetic tree that includes only extinct, or a mix of extinct and extant taxa, where at least some fossil data are available, we present a method to compute the distribution of the extinction time of a given set of taxa under the Fossilized-Birth-Death model. Our approach differs from the previous ones in that it takes into account (i) the possibility that the taxa or the clade considered may diversify before going extinct and (ii) the whole phylogenetic tree to estimate extinction times, whilst previous methods do not consider the diversification process and deal with each branch independently. -
Morphology, Phylogeny, and Evolution of Diadectidae (Cotylosauria: Diadectomorpha)
Morphology, Phylogeny, and Evolution of Diadectidae (Cotylosauria: Diadectomorpha) by Richard Kissel A thesis submitted in conformity with the requirements for the degree of doctor of philosophy Graduate Department of Ecology & Evolutionary Biology University of Toronto © Copyright by Richard Kissel 2010 Morphology, Phylogeny, and Evolution of Diadectidae (Cotylosauria: Diadectomorpha) Richard Kissel Doctor of Philosophy Graduate Department of Ecology & Evolutionary Biology University of Toronto 2010 Abstract Based on dental, cranial, and postcranial anatomy, members of the Permo-Carboniferous clade Diadectidae are generally regarded as the earliest tetrapods capable of processing high-fiber plant material; presented here is a review of diadectid morphology, phylogeny, taxonomy, and paleozoogeography. Phylogenetic analyses support the monophyly of Diadectidae within Diadectomorpha, the sister-group to Amniota, with Limnoscelis as the sister-taxon to Tseajaia + Diadectidae. Analysis of diadectid interrelationships of all known taxa for which adequate specimens and information are known—the first of its kind conducted—positions Ambedus pusillus as the sister-taxon to all other forms, with Diadectes sanmiguelensis, Orobates pabsti, Desmatodon hesperis, Diadectes absitus, and (Diadectes sideropelicus + Diadectes tenuitectes + Diasparactus zenos) representing progressively more derived taxa in a series of nested clades. In light of these results, it is recommended herein that the species Diadectes sanmiguelensis be referred to the new genus -
Distributions of Extinction Times from Fossil Ages and Tree Topologies: the Example of Some Mid-Permian Synapsid Extinctions
bioRxiv preprint doi: https://doi.org/10.1101/2021.06.11.448028; this version posted June 11, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Distributions of extinction times from fossil ages and tree topologies: the example of some mid-Permian synapsid extinctions Gilles Didier1 and Michel Laurin2 1IMAG, Univ Montpellier, CNRS, Montpellier, France 2CR2P (“Centre de Recherches sur la Paléobiodiversité et les Paléoenvironnements”; UMR 7207), CNRS/MNHN/UPMC, Sorbonne Université, Muséum National d’Histoire Naturelle, Paris, France June 11, 2021 Abstract Given a phylogenetic tree of extinct and extant taxa with fossils where the only temporal infor- mation stands in the fossil ages, we devise a method to compute the distribution of the extinction time of a given set of taxa under the Fossilized-Birth-Death model. Our approach differs from the previous ones in that it takes into account the possibility that the taxa or the clade considered may diversify before going extinct, whilst previous methods just rely on the fossil recovery rate to estimate confidence intervals. We assess and compare our new approach with a standard previous one using simulated data. Results show that our method provides more accurate confidence intervals. This new approach is applied to the study of the extinction time of three Permo-Carboniferous synapsid taxa (Ophiacodontidae, Edaphosauridae, and Sphenacodontidae) that are thought to have disappeared toward the end of the Cisuralian, or possibly shortly thereafter. The timing of extinctions of these three taxa and of their component lineages supports the idea that a biological crisis occurred in the late Kungurian/early Roadian. -
Physical and Environmental Drivers of Paleozoic Tetrapod Dispersal Across Pangaea
ARTICLE https://doi.org/10.1038/s41467-018-07623-x OPEN Physical and environmental drivers of Paleozoic tetrapod dispersal across Pangaea Neil Brocklehurst1,2, Emma M. Dunne3, Daniel D. Cashmore3 &Jӧrg Frӧbisch2,4 The Carboniferous and Permian were crucial intervals in the establishment of terrestrial ecosystems, which occurred alongside substantial environmental and climate changes throughout the globe, as well as the final assembly of the supercontinent of Pangaea. The fl 1234567890():,; in uence of these changes on tetrapod biogeography is highly contentious, with some authors suggesting a cosmopolitan fauna resulting from a lack of barriers, and some iden- tifying provincialism. Here we carry out a detailed historical biogeographic analysis of late Paleozoic tetrapods to study the patterns of dispersal and vicariance. A likelihood-based approach to infer ancestral areas is combined with stochastic mapping to assess rates of vicariance and dispersal. Both the late Carboniferous and the end-Guadalupian are char- acterised by a decrease in dispersal and a vicariance peak in amniotes and amphibians. The first of these shifts is attributed to orogenic activity, the second to increasing climate heterogeneity. 1 Department of Earth Sciences, University of Oxford, South Parks Road, Oxford OX1 3AN, UK. 2 Museum für Naturkunde, Leibniz-Institut für Evolutions- und Biodiversitätsforschung, Invalidenstraße 43, 10115 Berlin, Germany. 3 School of Geography, Earth and Environmental Sciences, University of Birmingham, Birmingham B15 2TT, UK. 4 Institut -
A New Basal Sphenacodontid Synapsid from the Late Carboniferous of the Saar−Nahe Basin, Germany
A new basal sphenacodontid synapsid from the Late Carboniferous of the Saar−Nahe Basin, Germany JÖRG FRÖBISCH, RAINER R. SCHOCH, JOHANNES MÜLLER, THOMAS SCHINDLER, and DIETER SCHWEISS Fröbisch, J., Schoch, R.R., Müller, J., Schindler, T., and Schweiss, D. 2011. A new basal sphenacodontid synapsid from the Late Carboniferous of the Saar−Nahe Basin, Germany. Acta Palaeontologica Polonica 56 (1): 113–120. A new basal sphenacodontid synapsid, represented by an anterior portion of a mandible, demonstrates for the first time the presence of amniotes in the largest European Permo−Carboniferous basin, the Saar−Nahe Basin. The new taxon, Cryptovenator hirschbergeri gen. et sp. nov., is autapomorphic in the extreme shortness and robustness of the lower jaw, with moderate heterodonty, including the absence of a greatly reduced first tooth and only a slight caniniform develop− ment of the second and third teeth. Cryptovenator shares with Dimetrodon, Sphenacodon, and Ctenospondylus, but nota− bly not with Secodontosaurus, enlarged canines and a characteristic teardrop outline of the marginal teeth in lateral view, possession of a deep symphyseal region, and a strongly concave dorsal margin of the dentary. The new find shows that sphenacodontids were present in the Saar−Nahe Basin by the latest Carboniferous, predating the record of sphenacodontid tracks from slightly younger sediments in this region. Key words: Synapsida, Sphenacodontidae, Carboniferous, Saar−Nahe Basin, Germany. Jörg Fröbisch [[email protected]], Department of Geology, The Field Museum, 1400 South Lake Shore Drive, Chicago, Illinois 60605, USA and [joerg.froebisch@mfn−berlin.de], Museum für Naturkunde Leibniz−Institut für Evolu− tions− und Biodiversitätsforschung an der Humboldt−Universität zu Berlin, Invalidenstr. -
Carlos Mauricio Peredo, Ph.D. EDUCATION PROFESSIONAL EXPERIENCE PEER REVIEWED PUBLICATIONS (14)
Carlos Mauricio Peredo, Ph.D. www.CMPeredo.com Assistant Professor & Society of Fellows Postdoctoral Scholar NSF Postdoctoral Fellow in Biology Earth and Environmental Science University of Michigan Ann Arbor, MI 48109–1005 (240) 462-3056 [email protected] EDUCATION Ph.D., Environmental Science and Policy, George Mason University, Fairfax, VA, 2019 M.S., Environmental Science and Policy, George Mason University, Fairfax, VA, 2015 B.S., Biology, Seton Hill University, Greensburg, PA, 2012 PROFESSIONAL EXPERIENCE 2019–present Assistant Professor & Society of Fellows Postdoctoral Scholar University of Michigan, Ann Arbor, MI 2019–present NSF Postdoctoral Fellow in Biology University of Michigan, Ann Arbor, MI Texas A&M Galveston, Galveston, TX 2018–2019 Predoctoral Fellow: Paleobiology Smithsonian Institution, Washington D.C. PEER REVIEWED PUBLICATIONS (14) * = undergraduate student 14. Groves*, S.L., C.M. Peredo, and N.D. Pyenson. 2021. What are the limits to whale ear bones size? Non-isometric scaling of the cetacean bulla. PeerJ. 9. 13. Uhen, M.D. and C.M. Peredo. 2021. The first possible remingtonocetid from North America. Acta Palaeontologica Polonica. 66. 12. Tate-Jones, M.K., C.M. Peredo, C.D. Marshall, and S.S.B. Hopkins. 2020. The dawn of Desmatophocidae: a new species of basal desmatophocid seal (Mammalia, Carnivora) from the Miocene of Oregon, USA. Journal of Vertebrate Paleontology. 40:4. 11. Leslie, M.S., C.M. Peredo, and N.D. Pyenson. 2019. Norrisanima miocaena, a new generic name and redescription of a stem balaenopteroid mysticete (Mammalia, Cetacea) from the Miocene of California. PeerJ 7. 1 10. Shipps*, B.K., C.M. Peredo, and N.D. -
Proquest Dissertations
Description of new materials of lanthasaurus hardestiorum (Eupelycosauria: Edaphosauridae) and a re-evaluation of its phylogenetic relationships by David M. Mazierski A thesis submitted in conformity with the requirements for the degree of Master of Science Ecology and Evolutionary Biology University of Toronto © Copyright by David M. Mazierski 2008 Library and Bibliotheque et 1*1 Archives Canada Archives Canada Published Heritage Direction du Branch Patrimoine de I'edition 395 Wellington Street 395, rue Wellington Ottawa ON K1A0N4 Ottawa ON K1A0N4 Canada Canada Your file Votre reference ISBN: 978-0-494-45022-2 Our file Notre reference ISBN: 978-0-494-45022-2 NOTICE: AVIS: The author has granted a non L'auteur a accorde une licence non exclusive exclusive license allowing Library permettant a la Bibliotheque et Archives and Archives Canada to reproduce, Canada de reproduire, publier, archiver, publish, archive, preserve, conserve, sauvegarder, conserver, transmettre au public communicate to the public by par telecommunication ou par Plntemet, prefer, telecommunication or on the Internet, distribuer et vendre des theses partout dans loan, distribute and sell theses le monde, a des fins commerciales ou autres, worldwide, for commercial or non sur support microforme, papier, electronique commercial purposes, in microform, et/ou autres formats. paper, electronic and/or any other formats. The author retains copyright L'auteur conserve la propriete du droit d'auteur ownership and moral rights in et des droits moraux qui protege cette these. this thesis. Neither the thesis Ni la these ni des extraits substantiels de nor substantial extracts from it celle-ci ne doivent etre imprimes ou autrement may be printed or otherwise reproduits sans son autorisation. -
Paleontology of the Bears Ears National Monument
Paleontology of Bears Ears National Monument (Utah, USA): history of exploration, study, and designation 1,2 3 4 5 Jessica Uglesich , Robert J. Gay *, M. Allison Stegner , Adam K. Huttenlocker , Randall B. Irmis6 1 Friends of Cedar Mesa, Bluff, Utah 84512 U.S.A. 2 University of Texas at San Antonio, Department of Geosciences, San Antonio, Texas 78249 U.S.A. 3 Colorado Canyons Association, Grand Junction, Colorado 81501 U.S.A. 4 Department of Integrative Biology, University of Wisconsin-Madison, Madison, Wisconsin, 53706 U.S.A. 5 University of Southern California, Los Angeles, California 90007 U.S.A. 6 Natural History Museum of Utah and Department of Geology & Geophysics, University of Utah, 301 Wakara Way, Salt Lake City, Utah 84108-1214 U.S.A. *Corresponding author: [email protected] or [email protected] Submitted September 2018 PeerJ Preprints | https://doi.org/10.7287/peerj.preprints.3442v2 | CC BY 4.0 Open Access | rec: 23 Sep 2018, publ: 23 Sep 2018 ABSTRACT Bears Ears National Monument (BENM) is a new, landscape-scale national monument jointly administered by the Bureau of Land Management and the Forest Service in southeastern Utah as part of the National Conservation Lands system. As initially designated in 2016, BENM encompassed 1.3 million acres of land with exceptionally fossiliferous rock units. Subsequently, in December 2017, presidential action reduced BENM to two smaller management units (Indian Creek and Shash Jáá). Although the paleontological resources of BENM are extensive and abundant, they have historically been under-studied. Here, we summarize prior paleontological work within the original BENM boundaries in order to provide a complete picture of the paleontological resources, and synthesize the data which were used to support paleontological resource protection. -
Callibrachion and Datheosaurus, Two Historical and Previously Mistaken Basal Caseasaurian Synapsids from Europe
Callibrachion and Datheosaurus, two historical and previously mistaken basal caseasaurian synapsids from Europe FREDERIK SPINDLER, JOCELYN FALCONNET, and JÖRG FRÖBISCH Spindler, F., Falconnet, J., and Fröbisch, J. 2016. Callibrachion and Datheosaurus, two historical and previously mis- taken basal caseasaurian synapsids from Europe. Acta Palaeontologica Polonica 61 (3): 597–616. This study represents a re-investigation of two historical fossil discoveries, Callibrachion gaudryi (Artinskian of France) and Datheosaurus macrourus (Gzhelian of Poland), that were originally classified as haptodontine-grade sphenaco- dontians and have been lately treated as nomina dubia. Both taxa are here identified as basal caseasaurs based on their overall proportions as well as dental and osteological characteristics that differentiate them from any other major syn- apsid subclade. As a result of poor preservation, no distinct autapomorphies can be recognized. However, our detailed investigations of the virtually complete skeletons in the light of recent progress in basal synapsid research allow a novel interpretation of their phylogenetic positions. Datheosaurus might represent an eothyridid or basal caseid. Callibrachion shares some similarities with the more derived North American genus Casea. These new observations on Datheosaurus and Callibrachion provide new insights into the early diversification of caseasaurs, reflecting an evolutionary stage that lacks spatulate teeth and broadened phalanges that are typical for other caseid species. Along with Eocasea, the former ghost lineage to the Late Pennsylvanian origin of Caseasauria is further closed. For the first time, the presence of basal caseasaurs in Europe is documented. Key words: Synapsida, Caseasauria, Carboniferous, Permian, Autun Basin, France, Intra-Sudetic Basin, Poland. Frederik Spindler [[email protected]], Dinosaurier-Park Altmühltal, Dinopark 1, 85095 Denkendorf, Germany. -
THREE PELYCOSAURS INTHE AMERICAN MUSEUM of There Are in the Collections of the American Museum Three Skulls of Pelycosaurs Which
56.81.7:14.71.4 Article XXXII.- RECONSTRUCTIONS OF THE SKULLS OF THREE PELYCOSAURS IN THE AMERICAN MUSEUM OF NATURAL HISTORY. BY D. M. S. WATSON, M.Sc., LECTURER IN VERTEBRATE PALIEON- TOLOGY IN UNIVERSITY COLLEGE, LONDON. There are in the collections of the American Museum three skulls of Pelycosaurs which, although they are somewhat disarticulated, crushed and fragmentary, show the sutures with clearness. As they represent rare types, very incompletely known, and of special interest, it is desirable to make reconstructions of them. This paper explains in some detail the methods I adopt in treating such material and the resulting figures will I hope be useful because by the method of reconstruction on which they depend no errors of morphological impor- tance can be introduced, that is the contacts and relations of the individual bones will be correctly represented, although the general shape of the skull may not be very accurately reproduced. (1) EDAPHOSAURUS POGONIAS Cope. Cope's famous type specimen of Edaphosaurus has been the subject of restorations by Case and Broom and has recently been described by v. Huene, but the accounts of these authors differ so considerably that it seems advisa- ble to rediscuss it, especially as the new skull described by Professor Willis- ton does not show the sutures clearly although being uncrushed it gives a perfect knowledge of the shape. The very different proportions of the parietals and interorbital widths which can be directly measured on the top of the skull in these two specimens show that they belong to different species. Professor Williston's specimen shows that we shall not be far out in regarding the interorbital surface as flat. -
The Cranial Anatomy and Relationships of the Synapsid Varanosaurus (Eupelycosauria: Ophiacodontidae) from the Early Permian of Texas and Oklahoma
ANNALS OF CARNEGIE MUSEUM VOL 64, NUM~. 2, ..... 99-133 12 MAy 1995 THE CRANIAL ANATOMY AND RELATIONSHIPS OF THE SYNAPSID VARANOSAURUS (EUPELYCOSAURIA: OPHIACODONTIDAE) FROM THE EARLY PERMIAN OF TEXAS AND OKLAHOMA DAVID S BERMAN Curator, Section of Vertebrate Paleontology ROBERT R. REISZI JOHN R. BoLT2 DIANE ScoTTI ABsTRACT The cranial anatomy of the Early Permian synapsid Varanosaurus is restudied on the basis of preY iously described specimens from Texas, most importantly the holotype of the type species V. aCUlirostris. and a recently discovered, excellently preserved specimen from Oklahoma. Cladistic analysis of the Eupelycosauria, using a data matrix 0(95 characters, provides the following hYPOthesis of relationships of VaraIJosaurus: I) VaraIJosaurus is a member of the family Ophiacodontidae; 2) of the ophiacodonlid genera included in the analysis, Varanosaurus and OpniacodOIJ share a more recent common ancestor than either does with the more primitive Arcna('()tnyris; and 3) a clade containing the progressively more derived taxa Edaphosauridae, H aplodus. and Sphenacodontoidea (Sphena- . codontidae plus Therapsida), together with Varanopseidae and Caseasauria, are progressively more distant outgroups or sister taxa to Ophiacodontidae. A revised diagnosis is given for VaralJosQurus. INTRODUCTION Published accounts of the Early Permian synapsid Varanosaurus have been limited almost entirely to rather brief descriptions based on a few poorly preserved andlor incomplete skeletons collected from the Lower Permian of north-central Texas. The holotype of the type species Varanosaurus acutirostris was described originally by Broili (1904) and consists of an incomplete articulated skeleton (BSPHM 1901 XV 20), including most importantly the greater portion of the skull, collected from the Arroyo Formation, Clear Fork Group. -
Edaphosaurus Boanerges Edaphosaurus Was a Large Synapsid That Time: 250-300 Million Lived in North America and Europe 300 Years Ago Million Years Ago
Crazy Creatures Edaphosaurus boanerges Edaphosaurus was a large synapsid that Time: 250-300 million lived in North America and Europe 300 years ago million years ago. Period: Carboniferous Edaphosaurus looked similar to a much and Permian more famous creature but was very different, with a tiny head and huge, The Sail-Backed unique teeth. Herbivore It had a huge sail on its back that remains a bit of a mystery to this day! Your task 1: Draw Edaphosaurus. It had: A small, square head A wide, thick body A large semicircle sail on its back Sprawling legs with big claws Your task 2: Edaphosaurus sail was made from skin stretched between spines of bone. There are lots of reasons an animal might have a big sail like this one. What do you think Edaphosaurus used its sail for? Creature Fact! Your task 3: Edaphosaurus looks similar to another famous creature. Do some Edaphosaurus research to find out which one! means “pavement lizard” it is named after its unusual teeth! Your task 4: Edaphosaurus had many smaller pointy teeth and two giant teeth almost as big as its entire mouth! Why do you think it had such big teeth? Your task 5: Edaphosaurus might have used its sail to show off! That means it would have really bright colours. Colour in the sail below with the colours you think it had! Your task 6: Edaphosaurus had a huge body and a tiny head. Lots of animals that eat plants have big bodies and small heads so they can fit in lots of stomach to digest their food.