Walker Branch Watershed: DOE's Canary in a Cage Michael Huston the Effects of Pollution and Climate Change on Forests Are Being Studied in Oak Ridge
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Expression and Prognostic Role of IKBKE and TBK1 in Stage I Non-Small Cell Lung Cancer
Cancer Management and Research Dovepress open access to scientific and medical research Open Access Full Text Article ORIGINAL RESEARCH Expression and prognostic role of IKBKE and TBK1 in stage I non-small cell lung cancer This article was published in the following Dove Press journal: Cancer Management and Research Xin Wang1,2 Background: The inhibitors of nuclear factor kappa-B kinase subunit epsilon (IKBKE) and Feifei Teng2 TANK-binding kinase 1 (TBK1) are important members of the nonclassical IKK family that Jie Lu3 share the kinase domain. They are important oncogenes for activation of several signaling Dianbin Mu4 pathways in several tumors. This study aims to explore the expression of IKBKE and TBK1 Jianbo Zhang4 and their prognostic role in stage I non-small cell lung cancer (NSCLC). Jinming Yu1,2 Patients and methods: A total of 142 surgically resected stage I NSCLC patients were enrolled and immunohistochemistry of IKBKE and TBK1 was performed. 1 Department of Oncology, Renmin Results: IKBKE and TBK1 were expressed in 121 (85.2%) and 114 (80.3%) of stage I Hospital of Wuhan University, Wuhan, fi Hubei 430060, People’s Republic of China; NSCLC patients respectively. IKBKE expression was signi cantly associated with TBK1 2Department of Radiation Oncology, expression (P=0.004). Furthermore, multivariate regression analyses showed there was a fi Shandong Cancer Hospital Af liated to significant relationship between patients with risk factors, the recurrence pattern of metas- Shandong University, Shandong Academy of Medical Sciences, Jinan, Shandong tasis and IKBKE+/TBK1+ co-expression (P=0.032 and P=0.022, respectively). In Kaplan– 250117, People’s Republic of China; Meier survival curve analyses, the IKBKE+/TBK1+ co-expression subgroup was signifi- 3Department of Neurosurgery, Shandong Province Qianfoshan Hospital of Shandong cantly associated with poor overall survival (P=0.014). -
Minority Percentages at Participating Newspapers
2012 Minority Percentages at Participating Newspapers American Asian Indian American Black Hispanic Multi-racial Total American Asian The News-Times, El Dorado 0.0 0.0 11.8 0.0 0.0 11.8 Indian American Black Hispanic Multi-racial Total Times Record, Fort Smith 0.0 0.0 0.0 0.0 3.3 3.3 ALABAMA Harrison Daily Times 0.0 0.0 0.0 0.0 0.0 0.0 The Alexander City Outlook 0.0 0.0 0.0 0.0 0.0 0.0 The Daily World, Helena 0.0 0.0 0.0 0.0 0.0 0.0 The Andalusia Star-News 0.0 0.0 0.0 0.0 0.0 0.0 The Sentinel-Record, Hot Springs National Park 0.0 0.0 0.0 0.0 0.0 0.0 The News-Courier, Athens 0.0 0.0 0.0 0.0 0.0 0.0 The Jonesboro Sun 0.0 0.0 0.0 0.0 0.0 0.0 The Birmingham News 0.0 0.0 20.2 0.0 0.0 20.2 Banner-News, Magnolia 0.0 0.0 15.4 0.0 0.0 15.4 The Cullman Times 0.0 0.0 0.0 0.0 0.0 0.0 Malvern Daily Record 0.0 0.0 0.0 0.0 0.0 0.0 The Decatur Daily 0.0 0.0 13.9 11.1 0.0 25.0 Paragould Daily Press 0.0 0.0 0.0 0.0 0.0 0.0 Enterprise Ledger 0.0 0.0 0.0 0.0 0.0 0.0 Pine Bluff Commercial 0.0 0.0 25.0 0.0 0.0 25.0 TimesDaily, Florence 0.0 0.0 4.8 0.0 0.0 4.8 The Daily Citizen, Searcy 0.0 0.0 0.0 0.0 0.0 0.0 Fort Payne Times-Journal 0.0 0.0 0.0 0.0 0.0 0.0 Stuttgart Daily Leader 0.0 0.0 0.0 0.0 0.0 0.0 Valley Times-News, Lanett 0.0 0.0 0.0 0.0 0.0 0.0 Evening Times, West Memphis 0.0 0.0 0.0 0.0 0.0 0.0 Press-Register, Mobile 0.0 0.0 8.7 0.0 1.4 10.1 CALIFORNIA Montgomery Advertiser 0.0 0.0 17.5 0.0 0.0 17.5 The Bakersfield Californian 0.0 2.4 2.4 16.7 0.0 21.4 The Selma Times-Journal 0.0 0.0 50.0 0.0 0.0 50.0 Desert Dispatch, Barstow 0.0 0.0 0.0 0.0 0.0 0.0 -
Full Petition Here
and several actually prohibit access to proceedings by anyone other than court personnel, parties, witnesses and lawyers, in direct violation of the Constitution. Because of this Court’s extensive work since March 13, 2020, to promote the safe operations of all Tennessee courts, including enabling and encouraging the use by courts of electronic communication tools such as teleconferences and video conferences, Petitioners now ask this Court to use its administrative and emergency power to protect the public’s Constitutional and common law right of access to court proceedings during the COVID-19 pandemic. Specifically, Petitioners ask that the Court, in adopting rules and plans for court operations throughout the pandemic: 1. Mandate that all Tennessee courts, judges, and judicial branch personnel preserve and honor the right of the public, including all Tennessee citizens, crime victims and their families, the criminal accused and their families, parties to civil actions and their families, and members of the press, to be personally present in court for in-person court proceedings, to the greatest extent possible. 2. Mandate that all Tennessee courts, judges, and judicial branch personnel, if electronic means are used to allow judges, court personnel, parties, counsel, court reporters, witnesses, or others to participate in court proceedings, accommodate the public’s right of access to proceedings by use of electronic means, such as listen- only or view-only access that allows members of the public to listen to or view court proceedings, with clear notice to the public of the availability of this access, regardless of the ability to be present in person, because of the constitutional nature of the rights of the public to access court proceedings. -
Workflows for Rapid Functional Annotation of Diverse
insects Article Workflows for Rapid Functional Annotation of Diverse Arthropod Genomes Surya Saha 1,2 , Amanda M. Cooksey 2,3, Anna K. Childers 4 , Monica F. Poelchau 5 and Fiona M. McCarthy 2,* 1 Boyce Thompson Institute, 533 Tower Rd., Ithaca, NY 14853, USA; [email protected] 2 School of Animal and Comparative Biomedical Sciences, University of Arizona, 1117 E. Lowell St., Tucson, AZ 85721, USA; [email protected] 3 CyVerse, BioScience Research Laboratories, University of Arizona, 1230 N. Cherry Ave., Tucson, AZ 85721, USA 4 Bee Research Laboratory, Beltsville Agricultural Research Center, Agricultural Research Service, USDA, 10300 Baltimore Ave., Beltsville, MD 20705, USA; [email protected] 5 National Agricultural Library, Agricultural Research Service, USDA, 10301 Baltimore Ave., Beltsville, MD 20705, USA; [email protected] * Correspondence: fi[email protected] Simple Summary: Genomic technologies are accumulating information about genes faster than ever before, and sequencing initiatives, such as the Earth BioGenome Project, i5k, and Ag100Pest Initiative, are expected to increase this rate of acquisition. However, if genomic sequencing is to be used for the improvement of human health, agriculture, and our understanding of biological systems, it is necessary to identify genes and understand how they contribute to biological outcomes. While there are several well-established workflows for assembling genomic sequences and identifying genes, understanding gene function is essential to create actionable knowledge. Moreover, this functional annotation process must be easily accessible and provide information at a genomic scale to keep up Citation: Saha, S.; Cooksey, A.M.; with new sequence data. We report a well-defined workflow for rapid functional annotation of whole Childers, A.K.; Poelchau, M.F.; proteomes to produce Gene Ontology and pathways information. -
December 2019 No
Volume 83 December 2019 No. 6 2020 TPA Winter Convention set for Feb. 12-13 in Nashville INSIDE the DoubleTree by calling (800) ROBYN GENTILE Vass: Time to close Tennessee Press Association 222-8733. The TPA rate is $239 November 10, 2019 plus tax and parking per night. The generation gaps deadline for hotel reservations is The Tennessee Press Associa- Jan. 8. Registration materials will Page 2 tion’s 2020 Winter Convention be available online at www.tnpress. will again be a two-day, one-night News com on Dec. 12. Page 4 event, and it will focus on the sen- atorial candidates, TPA business, Tracks government affairs and students. Convention schedule: Page 5 The convention will return to the Wednesday, Feb. 12 DoubleTree Hotel on Fourth Ave- 1 p.m. TPA Government Affairs Reader trust in local nue in downtown Nashville, Feb. Committee Meeting news is risky business 12-13. 2 p.m. TPA Board of Directors Meeting & Concurrent Business Page 6 Opening Reception— Session TPA joins with Paulson legislators invited 3 p.m. TPA Foundation Board of on ‘1 for All Campaign’ Members of the Tennessee Trustees Meeting General Assembly will be invited 5 p.m. Opening Reception (all Page 7 to attend the Feb. 12 convention state legislators to be invited to Zinser: NLRB has fi nal OT opening reception; however, the TPA fi le photo attend) 7 p.m. Dinner on one’s own rule for salary exemption TPA Government Affairs Com- Tennessee Gov. Bill Lee spoke at the 2019 TPA Winter Convention and has mittee also asks you to extend a been invited back to be keynote speaker for the 2020 Convention luncheon. -
Molecular Basis of Tank-Binding Kinase 1 Activation by Transautophosphorylation
Molecular basis of Tank-binding kinase 1 activation by transautophosphorylation Xiaolei Maa,1, Elizabeth Helgasonb,1, Qui T. Phungc, Clifford L. Quanb, Rekha S. Iyera, Michelle W. Leec, Krista K. Bowmana, Melissa A. Starovasnika, and Erin C. Dueberb,2 Departments of aStructural Biology, bEarly Discovery Biochemistry, and cProtein Chemistry, Genentech, South San Francisco, CA 94080 Edited by Tony Hunter, Salk Institute for Biological Studies, La Jolla, CA, and approved April 25, 2012 (received for review December 30, 2011) Tank-binding kinase (TBK)1 plays a central role in innate immunity: it the C-terminal scaffolding/dimerization domain (SDD), a do- serves as an integrator of multiple signals induced by receptor- main arrangement that appears to be shared among the IKK mediated pathogen detection and as a modulator of IFN levels. family of kinases (3). Deletion or mutation of the ULD in TBK1 Efforts to better understand the biology of this key immunological or IKKε severely impairs kinase activation and substrate phos- factor have intensified recently as growing evidence implicates phorylation in cells (22, 23). Furthermore, the integrity of the aberrant TBK1 activity in a variety of autoimmune diseases and ULD in IKKβ is not only required for kinase activity (24) but was fi cancers. Nevertheless, key molecular details of TBK1 regulation and shown also to confer substrate speci city in conjunction with the β substrate selection remain unanswered. Here, structures of phos- adjacent SDD (25). Recent crystal structures of the IKK phorylated and unphosphorylated human TBK1 kinase and ubiq- homodimer demonstrate that the ULD and SDD form a joint, uitin-like domains, combined with biochemical studies, indicate three-way interface with the KD within each protomer of the a molecular mechanism of activation via transautophosphorylation. -
Downloaded As a CSV Dump file
cells Article Transcriptome and Methylome Analysis Reveal Complex Cross-Talks between Thyroid Hormone and Glucocorticoid Signaling at Xenopus Metamorphosis Nicolas Buisine 1,† , Alexis Grimaldi 1,†, Vincent Jonchere 1,† , Muriel Rigolet 1, Corinne Blugeon 2 , Juliette Hamroune 2 and Laurent Marc Sachs 1,* 1 UMR7221 Molecular Physiology and Adaption, CNRS, Museum National d’Histoire Naturelle, 57 Rue Cuvier, CEDEX 05, 75231 Paris, France; [email protected] (N.B.); [email protected] (A.G.); [email protected] (V.J.); [email protected] (M.R.) 2 Genomics Core Facility, Département de Biologie, Institut de Biologie de l’ENS (IBENS), École Normale Supérieure, CNRS, INSERM, Université PSL, 75005 Paris, France; [email protected] (C.B.); [email protected] (J.H.) * Correspondence: [email protected] † Co-first authors, alphabetic order. Abstract: Background: Most work in endocrinology focus on the action of a single hormone, and very little on the cross-talks between two hormones. Here we characterize the nature of interactions between thyroid hormone and glucocorticoid signaling during Xenopus tropicalis metamorphosis. Methods: We used functional genomics to derive genome wide profiles of methylated DNA and measured changes of gene expression after hormonal treatments of a highly responsive tissue, tailfin. Clustering classified the data into four types of biological responses, and biological networks were Citation: Buisine, N.; Grimaldi, A.; modeled by system biology. Results: We found that gene expression is mostly regulated by either Jonchere, V.; Rigolet, M.; Blugeon, C.; T or CORT, or their additive effect when they both regulate the same genes. A small but non- Hamroune, J.; Sachs, L.M. -
Mechanisms of IKBKE Activation in Cancer Sridevi Challa University of South Florida, [email protected]
University of South Florida Scholar Commons Graduate Theses and Dissertations Graduate School 1-29-2017 Mechanisms of IKBKE Activation in Cancer Sridevi Challa University of South Florida, [email protected] Follow this and additional works at: http://scholarcommons.usf.edu/etd Part of the Biochemistry Commons, Biology Commons, and the Cell Biology Commons Scholar Commons Citation Challa, Sridevi, "Mechanisms of IKBKE Activation in Cancer" (2017). Graduate Theses and Dissertations. http://scholarcommons.usf.edu/etd/6617 This Dissertation is brought to you for free and open access by the Graduate School at Scholar Commons. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. Mechanisms of IKBKE Activation in Cancer by Sridevi Challa A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy Department of Cell Biology, Microbiology, and Molecular Biology College of Arts and Sciences University of South Florida Major Professor: Mokenge P. Malafa, M.D. Gary Reuther, Ph.D. Eric Lau, Ph.D. Domenico Coppola, M.D. Date of Approval: January 12, 2017 Keywords: EGFR, Olaparib, resistance Copyright © 2017, Sridevi Challa DEDICATION This dissertation is dedicated to my kind and courageous mother. ACKNOWLEDGMENTS I would like to acknowledge Dr. Cheng for trusting me with completion of the projects. I would like to thank him for giving me the freedom to explore any aspect of research and always willing to provide the necessary resources and guidance for my projects. I want to also acknowledge Ted and the Cheng lab personnel for their support. -
Filed a Lawsuit Against the Tennessee Registry of Election Finance
E-FILED 4/29/2020 12:36 PM CLERK & MASTER DAVIDSON CO. CHANCERY CT. IN THE CHANCERY COURT OF TENNESSEE FOR THE TWENTIETH JUDICIAL DISTRICT AT NASHVILLE THE ASSOCIATED PRESS, KIMBERLEE KRUESI, CHATTANOOGA PUBLISHING COMPANY, GANNETT GP MEDIA, INC., MICHAEL ANASTASI, GOULD ENTERPRISES, INC., MEMPHIS FOURTH ESTATE, INC., MEREDITH CORPORATION, JEREMY FINLEY, No. __________________ SCRIPPS MEDIA, INC., BEN HALL, TEGNA, INC., JEREMY CAMPBELL, LISA LOVELL, TENNESSEE ASSOCIATION OF BROADCASTERS, TENNESSEE COALITION FOR OPEN GOVERNMENT, INC., and TENNESSEE PRESS ASSOCIATION, Plaintiffs, v. THE TENNESSEE REGISTRY OF ELECTION FINANCE, and PAIGE BURCHAM-DENNIS, HANK FINCHER, DAVID GOLDIN, PAZ HAYNES, TOM LAWLESS, and TOM MORTON, in their Official Capacities as Members of the Tennessee Registry of Election Finance, and BILL YOUNG, in his Official Capacity as Executive Director of the Bureau of Ethics and Campaign Finance, Defendants. COMPLAINT TO ENFORCE THE TENNESSEE OPEN MEETINGS ACT 1 Plaintiffs The Associated Press and its reporter Kimberlee Kruesi, Chattanooga Publishing Company, Gannett GP Media, Inc. and its editor Michael Anastasi, Gould Enterprises, Inc., Meredith Corporation and its reporter, Jeremy Finley, Memphis Fourth Estate, Inc., Scripps Media, Inc. and its reporter Ben Hall, TEGNA, Inc. and its news directors Jeremy Campbell and Lisa Lovell, the Tennessee Association of Broadcasters, the Tennessee Coalition for Open Government, Inc., and the Tennessee Press Association (collectively, “Plaintiffs”), for their complaint to enforce the Tennessee Open Meetings Act against the Tennessee Registry of Election Finance, its members, in their official capacities, Paige Burcham-Dennis, Hank Fincher, David Goldin, Paz Haynes, Tom Lawless, and Tom Morton, and Executive Director of the Bureau of Ethics and Campaign Finance Bill Young, in his official capacity, state as follows: PARTIES, JURISDICTION, AND VENUE 1. -
Supp Material.Pdf
Supplemental Material STRESS-INDUCED H3S28 PHOSPHORYLATION MODULATES LOCAL HISTONE ACETYLATION LEVELS Anna Sawicka, Dominik Hartl, Malgorzata Goiser, Oliver Pusch, Roman R Stocsits, Ido M Tamir, Karl Mechtler, Christian Seiser Supplemental Methods Supplemental Figure Legends Supplemental Tables (SUPPL. TABLES 1-2, 4-5) Supplemental Tables (SUPPL. TABLES 3, 6-9, provided as txt files) References Supplemental Figures (SUPPL. FIGURES 1-21) Supplemental Methods Histone peptides used for the pull-down assay and mass spectrometry analysis: H3unmodified (3-20): H2N-TKQTARKSTGGKAPRKQLC-CONH2 H3S10phK14ac (3-20): H2N-TKQTARKS(ph)TGGK(Ac)APRKQLC -CONH2 H3unmodified (19-36): H2N-QLATKAARKSAPATGGVKKC-CONH2 H3S28ph (19-36): H2N-QLATKAARKS(ph)APATGGVKKC-CONH2 Histone peptide pull-down assay For histone peptide pull down assays, 0.1 mg of synthetic peptides (peptide sequences are given above), corresponding to amino acids 3-20 and 19-36 of histone H3 (numbered from N-terminus of histone H3) with a C-terminal cysteine added were coupled to 40 µl (bed volume) of SulfoLink Coupling Resin (Thermo Scientific) according to the manufacturerʼs instructions. Peptide-coupled resin was incubated overnight at 4oC on a roller with 500 µg of nuclear extract (isolated from proliferating HeLa cells treated with 188.5 nM Anisomycin for 1 hour) diluted to 0.5 µg/µl in the binding buffer (20 mM Tris-HCl pH 8.0, 135 mM NaCl, 0.5% NP40, 10% glycerol). The beads were washed 3 times 20 mM Tris-HCl pH 8.0, 135 mM NaCl, 0.5% NP40, 10% glycerol, followed by two washes with 200 mM NaCl, 50 mM Tris-HCl pH 8.0, 0.1 % SDS, 0.1% NP40, 0.5% sodium deoxycholate. -
After 82 Years, Tennessean's Pressroom Goes Quiet
Volume 82 April 2019 No. 10 INSIDE Plan now for 2019 Summer Convention in Chattanooga ROBYN GENTILE tising/Circulation Conference and Horne: Many in TN rural Member Services Manager, TPA Ideas Contest Awards Luncheon, March 18, 2019 as well as sessions for the news- areas lack health care room. Page 2 TPA members should plan now The convention will be held at for the Summer Convention, July The Read House Hotel, a luxury Daniels: Readers ready 18-19, in Chattanooga. historic hotel in the heart of down- The packed agenda includes town. The hotel underwent reno- to be engaged the State Press Contests Awards vations in 2018. TPA convention Page 3 Luncheon, Advertising/Circulation attendees may make reservations Conference, a reception and TPA by contacting the hotel at (423) Collierville Herald Presidential installation at the 266-4121. The convention rate is celebrates 90 years Tennessee Aquarium and a Ten- $159 plus tax per night. The hotel nessee Newspaper Hall of Fame offers valet parking. Page 5 Induction Ceremony. Chattanooga Convention & Visitors Bureau The convention schedule fol- Major weather events Hall of Fame An aerial view of Chattanooga, host city for the 2019 TPA Summer Con- lows: Induction vention, July 18-19. Thursday, July 18 confront newspapers Noon. State Press Contests Awards Luncheon Pages 6-7, 10 Selected for of USA Today; presentation of the State Press 2:30 p.m. TPA Board of Directors Sheriff Bart: Need help? posthumous and George T. Contests Awards. Winners will Meeting & Concurrent Business induction into Whitley, long- be notifi ed of an award, but not Session Get another source the Tennessee time publisher placement, by May 24. -
The Human Gene Connectome As a Map of Short Cuts for Morbid Allele Discovery
The human gene connectome as a map of short cuts for morbid allele discovery Yuval Itana,1, Shen-Ying Zhanga,b, Guillaume Vogta,b, Avinash Abhyankara, Melina Hermana, Patrick Nitschkec, Dror Friedd, Lluis Quintana-Murcie, Laurent Abela,b, and Jean-Laurent Casanovaa,b,f aSt. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY 10065; bLaboratory of Human Genetics of Infectious Diseases, Necker Branch, Paris Descartes University, Institut National de la Santé et de la Recherche Médicale U980, Necker Medical School, 75015 Paris, France; cPlateforme Bioinformatique, Université Paris Descartes, 75116 Paris, France; dDepartment of Computer Science, Ben-Gurion University of the Negev, Beer-Sheva 84105, Israel; eUnit of Human Evolutionary Genetics, Centre National de la Recherche Scientifique, Unité de Recherche Associée 3012, Institut Pasteur, F-75015 Paris, France; and fPediatric Immunology-Hematology Unit, Necker Hospital for Sick Children, 75015 Paris, France Edited* by Bruce Beutler, University of Texas Southwestern Medical Center, Dallas, TX, and approved February 15, 2013 (received for review October 19, 2012) High-throughput genomic data reveal thousands of gene variants to detect a single mutated gene, with the other polymorphic genes per patient, and it is often difficult to determine which of these being of less interest. This goes some way to explaining why, variants underlies disease in a given individual. However, at the despite the abundance of NGS data, the discovery of disease- population level, there may be some degree of phenotypic homo- causing alleles from such data remains somewhat limited. geneity, with alterations of specific physiological pathways under- We developed the human gene connectome (HGC) to over- come this problem.