The Kingdom Fungi: A. Chytridiomycota: Synchytrium, B
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Supplementary Table S2: New Taxonomic Assignment of Sequences of Basal Fungal Lineages
Supplementary Table S2: New taxonomic assignment of sequences of basal fungal lineages. Fungal sequences were subjected to BLAST-N analysis and checked for their taxonomic placement in the eukaryotic guide-tree of the SILVA release 111. Sequences were classified depending on combined results from the methods mentioned above as well as literature searches. Accession Name New classification Clustering of the sequence in the Best BLAST-N hit number based on combined results eukaryotic guide tree of SILVA Name Accession number E.value Identity AB191431 Uncultured fungus Chytridiomycota Chytridiomycota Basidiobolus haptosporus AF113413.1 0.0 91 AB191432 Unculltured eukaryote Blastocladiomycota Blastocladiomycota Rhizophlyctis rosea NG_017175.1 0.0 91 AB252775 Uncultured eukaryote Chytridiomycota Chytridiomycota Blastocladiales sp. EF565163.1 0.0 91 AB252776 Uncultured eukaryote Fungi Nucletmycea_Fonticula Rhizophydium sp. AF164270.2 0.0 87 AB252777 Uncultured eukaryote Chytridiomycota Chytridiomycota Basidiobolus haptosporus AF113413.1 0.0 91 AB275063 Uncultured fungus Chytridiomycota Chytridiomycota Catenomyces sp. AY635830.1 0.0 90 AB275064 Uncultured fungus Chytridiomycota Chytridiomycota Endogone lactiflua DQ536471.1 0.0 91 AB433328 Nuclearia thermophila Nuclearia Nucletmycea_Nuclearia Nuclearia thermophila AB433328.1 0.0 100 AB468592 Uncultured fungus Basal clone group I Chytridiomycota Physoderma dulichii DQ536472.1 0.0 90 AB468593 Uncultured fungus Basal clone group I Chytridiomycota Physoderma dulichii DQ536472.1 0.0 91 AB468594 Uncultured -
Synchytrium Endobioticum (Schilb.) Percival Pest Risk Assessment for Oregon
Synchytrium endobioticum (Schilb.) Percival Pest Risk Assessment for Oregon This pest risk assessment follows the format used by the Exotic Forest Pest Information System for North America. For a description of the evaluation process used, see http://spfnic.fs.fed.us/exfor/download.cfm. IDENTITY Name: Synchytrium endobioticum (Schilb.) Percival Taxonomic Position: Chytridiales: Synchytriaceae Common Name: Potato wart disease RISK RATING SUMMARY Numerical Score: 6 Relative Risk Rating: HIGH Uncertainty: Very Certain Uncertainty in this assessment results from: Potato wart has been extensively studied in the countries in which it is established. RISK RATING DETAILS Establishment potential is HIGH Justification: Potato wart is apparently native to the Andes Mountains and has subsequently been spread throughout the world through the movement of infected or contaminated tubers. It has become successfully established in several countries in Europe, Asia, Africa, North America, South America, and Oceania. Previous detections in Maryland, Pennsylvania, and West Virginia had reportedly been eradicated by 1974, although surveys conducted in Maryland revealed the presence of resting spores of the pathogen were still present in one home garden. The spores were reportedly non-viable. Spread potential is MODERATE Justification: Potato wart has been spread throughout the world through the movement of infested tubers. Local spread is primarily through the movement of contaminated soil on equipment, vehicle tires, tubers, and plants. Spores may also be spread by wind. Symptoms in the field may not manifest until after repeated cultivation of susceptible hosts within a field or garden. Infected tubers may not manifest symptoms until in storage; however, meristematic tissue (sprouts) may be so severely affected plants will not emerge from infected seed tubers. -
Fossil Fungi with Suggested Affinities to the Endogonaceae from the Middle Triassic of Antarctica
KU ScholarWorks | http://kuscholarworks.ku.edu Please share your stories about how Open Access to this article benefits you. Fossil fungi with suggested affinities to the Endogonaceae from the Middle Triassic of Antarctica by Michael Krings. Thomas N. Taylor, Nora Dotzler, and Gianna Persichini 2012 This is the published version of the article, made available with the permission of the publisher. The original published version can be found at the link below. [Citation] Published version: http://www.dx.doi.org/10.3852/11-384 Terms of Use: http://www2.ku.edu/~scholar/docs/license.shtml KU ScholarWorks is a service provided by the KU Libraries’ Office of Scholarly Communication & Copyright. Mycologia, 104(4), 2012, pp. 835–844. DOI: 10.3852/11-384 # 2012 by The Mycological Society of America, Lawrence, KS 66044-8897 Fossil fungi with suggested affinities to the Endogonaceae from the Middle Triassic of Antarctica Michael Krings1 INTRODUCTION Department fu¨ r Geo- und Umweltwissenschaften, Pala¨ontologie und Geobiologie, Ludwig-Maximilians- Documenting the evolutionary history of fungi based Universita¨t, and Bayerische Staatssammlung fu¨r on fossils is generally hampered by the incompleteness Pala¨ontologie und Geologie, Richard-Wagner-Straße 10, of the fungal fossil record (Taylor et al. 2011). Only a 80333 Munich, Germany, and Department of Ecology few geologic deposits have yielded fungal fossils and Evolutionary Biology, and Natural History preserved in sufficient detail to permit assignment to Museum and Biodiversity Research Institute, University of Kansas, Lawrence, Kansas 66045 any one of the major lineages of fungi with any degree of confidence. Perhaps the most famous of these Thomas N. -
Fungal Evolution: Major Ecological Adaptations and Evolutionary Transitions
Biol. Rev. (2019), pp. 000–000. 1 doi: 10.1111/brv.12510 Fungal evolution: major ecological adaptations and evolutionary transitions Miguel A. Naranjo-Ortiz1 and Toni Gabaldon´ 1,2,3∗ 1Department of Genomics and Bioinformatics, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain 2 Department of Experimental and Health Sciences, Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain 3ICREA, Pg. Lluís Companys 23, 08010 Barcelona, Spain ABSTRACT Fungi are a highly diverse group of heterotrophic eukaryotes characterized by the absence of phagotrophy and the presence of a chitinous cell wall. While unicellular fungi are far from rare, part of the evolutionary success of the group resides in their ability to grow indefinitely as a cylindrical multinucleated cell (hypha). Armed with these morphological traits and with an extremely high metabolical diversity, fungi have conquered numerous ecological niches and have shaped a whole world of interactions with other living organisms. Herein we survey the main evolutionary and ecological processes that have guided fungal diversity. We will first review the ecology and evolution of the zoosporic lineages and the process of terrestrialization, as one of the major evolutionary transitions in this kingdom. Several plausible scenarios have been proposed for fungal terrestralization and we here propose a new scenario, which considers icy environments as a transitory niche between water and emerged land. We then focus on exploring the main ecological relationships of Fungi with other organisms (other fungi, protozoans, animals and plants), as well as the origin of adaptations to certain specialized ecological niches within the group (lichens, black fungi and yeasts). -
Synchytrium-2
Synchytrium: Synchytrium is represented by about 200 species reported from all over the world, occurs as parasite on aquatic alga, bryophytes (mosses), pteridophytes (ferns) and mostly on flowering plants. About 80 species have been reported from India, of which S. rytzii on the members of Lamiaceae, S. trichosanthoides and S. laginariae on the members of Cucurbitaceae, S. taraxicola on Taraxacum officinale, S. sisamicola on Sesamum indicum and S. endobioticum is a well-known species which causes wart disease or black wart of potato, available in the main potato growing regions of the world, mostly in mountains with moist and cold climate. In India, this disease was first recorded at Rangbul in Darjeeling district of West Bengal in 1953. Symptoms of Disease Caused by Synchytrium: The disease is characterised by cauliflower-like black warty growth on tubers (Fig. 4.16), stolons and stem bases (Fig. 4.15). Sometimes, the size of the warts is more than the size of the tuber. Life History of Synchytrium: The life history of the most common species i.e., S. endobioticum has been studied by Miss K. M. Curtis, 1921; followed by Kohler (1923, 1931). The representation of the life cycle has been given in the Fig. 4.17. Vegetative Structure of Synchytrium: The vegetative body of Synchytrium consists of minute endobiotic holocarpic thallus, represented by naked uniflagellate zoospore with whiplash flagellum. Reproduction in Synchytrium: Synchytrium endobioticum reproduces both asexually and sexually. Vegetative reproduction is absent. During reproduction, the entire thallus transforms into a reproductive unit i.e., holocarpic. 1. Asexual Reproduction: Asexual reproduction generally occurs during favourable condition, i.e., in spring season. -
Causal Organism of Black Wart Disease of Potato)
Online class- TDC Part I Date-19.4.21 Synchytrium (Causal Organism of Black Wart Disease of Potato) Classification- (Alexpoulos and Mims,1979) Division- Mycota Sub division- Eumycotina Class- - Chytridiomycetes Order- Chytridiales Family- Synchytriaceae Genus- Synchytrium Species- endobioticum Synchytrium is a soil borne fungus which do not possess mycelium and is designated as holocarpic. It is placed under the order Chytridiales, series Uniflagellatae of Class Phycomycetes (Lower fungi) as classified by Sparrow (1960). It is worldwide in distribution, occurring in tropical, temperate and arctic zones. It has been found present even at higher altitudes of above 11000 ft. All the species are parasitic and infect algae, mosses, ferns and most commonly flowering plants. It causes Black wart disease in Potato. As a result potato tubers are affected and become malformed due to formation of warts on them. There are 200 species of Synchytrium, but about 60 species have been reported from India. The most common species is S. endobioticum, well known for disease on potato. It mainly infects solanaceous plants. Some important species are S. anemones; S.cajani; S.phaseoli-radiati; S. cyperi; S. fistulosus; S. luffae; S. indicum; S.meliloti etc. Somatic structure- The body of the fungus is composed of a single uninucleate cell with definite cell wall. The fungus resides in the potato tuber in most part of its life cycle and produces many uniflagellate motile zoospores. These zoospores are the carrier of fresh infection in healthy tubers. The fungus induces the host tissue to multiply in number and to grow in size. Due to this, many warts develop in the tubers; hence the disease is known as wart disease. -
Biology of Fungi, Lecture 2: the Diversity of Fungi and Fungus-Like Organisms
Biology of Fungi, Lecture 2: The Diversity of Fungi and Fungus-Like Organisms Terms You Should Understand u ‘Fungus’ (pl., fungi) is a taxonomic term and does not refer to morphology u ‘Mold’ is a morphological term referring to a filamentous (multicellular) condition u ‘Mildew’ is a term that refers to a particular type of mold u ‘Yeast’ is a morphological term referring to a unicellular condition Special Lecture Notes on Fungal Taxonomy u Fungal taxonomy is constantly in flux u Not one taxonomic scheme will be agreed upon by all mycologists u Classical fungal taxonomy was based primarily upon morphological features u Contemporary fungal taxonomy is based upon phylogenetic relationships Fungi in a Broad Sense u Mycologists have traditionally studied a diverse number of organisms, many not true fungi, but fungal-like in their appearance, physiology, or life style u At one point, these fungal-like microbes included the Actinomycetes, due to their filamentous growth patterns, but today are known as Gram-positive bacteria u The types of organisms mycologists have traditionally studied are now divided based upon phylogenetic relationships u These relationships are: Q Kingdom Fungi - true fungi Q Kingdom Straminipila - “water molds” Q Kingdom Mycetozoa - “slime molds” u Kingdom Fungi (Mycota) Q Phylum: Chytridiomycota Q Phylum: Zygomycota Q Phylum: Glomeromycota Q Phylum: Ascomycota Q Phylum: Basidiomycota Q Form-Phylum: Deuteromycota (Fungi Imperfecti) Page 1 of 16 Biology of Fungi Lecture 2: Diversity of Fungi u Kingdom Straminiplia (Chromista) -
S41467-021-25308-W.Pdf
ARTICLE https://doi.org/10.1038/s41467-021-25308-w OPEN Phylogenomics of a new fungal phylum reveals multiple waves of reductive evolution across Holomycota ✉ ✉ Luis Javier Galindo 1 , Purificación López-García 1, Guifré Torruella1, Sergey Karpov2,3 & David Moreira 1 Compared to multicellular fungi and unicellular yeasts, unicellular fungi with free-living fla- gellated stages (zoospores) remain poorly known and their phylogenetic position is often 1234567890():,; unresolved. Recently, rRNA gene phylogenetic analyses of two atypical parasitic fungi with amoeboid zoospores and long kinetosomes, the sanchytrids Amoeboradix gromovi and San- chytrium tribonematis, showed that they formed a monophyletic group without close affinity with known fungal clades. Here, we sequence single-cell genomes for both species to assess their phylogenetic position and evolution. Phylogenomic analyses using different protein datasets and a comprehensive taxon sampling result in an almost fully-resolved fungal tree, with Chytridiomycota as sister to all other fungi, and sanchytrids forming a well-supported, fast-evolving clade sister to Blastocladiomycota. Comparative genomic analyses across fungi and their allies (Holomycota) reveal an atypically reduced metabolic repertoire for sanchy- trids. We infer three main independent flagellum losses from the distribution of over 60 flagellum-specific proteins across Holomycota. Based on sanchytrids’ phylogenetic position and unique traits, we propose the designation of a novel phylum, Sanchytriomycota. In addition, our results indicate that most of the hyphal morphogenesis gene repertoire of multicellular fungi had already evolved in early holomycotan lineages. 1 Ecologie Systématique Evolution, CNRS, Université Paris-Saclay, AgroParisTech, Orsay, France. 2 Zoological Institute, Russian Academy of Sciences, St. ✉ Petersburg, Russia. 3 St. -
Microbial Community Structure in Rice, Crops, and Pastures Rotation Systems with Different Intensification Levels in the Temperate Region of Uruguay
Supplementary Material Microbial community structure in rice, crops, and pastures rotation systems with different intensification levels in the temperate region of Uruguay Sebastián Martínez Table S1. Relative abundance of the 20 most abundant bacterial taxa of classified sequences. Relative Taxa Phylum abundance 4,90 _Bacillus Firmicutes 3,21 _Bacillus aryabhattai Firmicutes 2,76 _uncultured Prosthecobacter sp. Verrucomicrobia 2,75 _uncultured Conexibacteraceae bacterium Actinobacteria 2,64 _uncultured Conexibacter sp. Actinobacteria 2,14 _Nocardioides sp. Actinobacteria 2,13 _Acidothermus Actinobacteria 1,50 _Bradyrhizobium Proteobacteria 1,23 _Bacillus Firmicutes 1,10 _Pseudolabrys_uncultured bacterium Proteobacteria 1,03 _Bacillus Firmicutes 1,02 _Nocardioidaceae Actinobacteria 0,99 _Candidatus Solibacter Acidobacteria 0,97 _uncultured Sphingomonadaceae bacterium Proteobacteria 0,94 _Streptomyces Actinobacteria 0,91 _Terrabacter_uncultured bacterium Actinobacteria 0,81 _Mycobacterium Actinobacteria 0,81 _uncultured Rubrobacteria Actinobacteria 0,77 _Xanthobacteraceae_uncultured forest soil bacterium Proteobacteria 0,76 _Streptomyces Actinobacteria Table S2. Relative abundance of the 20 most abundant fungal taxa of classified sequences. Relative Taxa Orden abundance. 20,99 _Fusarium oxysporum Ascomycota 11,97 _Aspergillaceae Ascomycota 11,14 _Chaetomium globosum Ascomycota 10,03 _Fungi 5,40 _Cucurbitariaceae; uncultured fungus Ascomycota 5,29 _Talaromyces purpureogenus Ascomycota 3,87 _Neophaeosphaeria; uncultured fungus Ascomycota -
Downloaded from by IP: 199.133.24.106 On: Mon, 18 Sep 2017 10:43:32 Spatafora Et Al
UC Riverside UC Riverside Previously Published Works Title The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies. Permalink https://escholarship.org/uc/item/4485m01m Journal Microbiology spectrum, 5(5) ISSN 2165-0497 Authors Spatafora, Joseph W Aime, M Catherine Grigoriev, Igor V et al. Publication Date 2017-09-01 DOI 10.1128/microbiolspec.funk-0053-2016 License https://creativecommons.org/licenses/by-nc-nd/4.0/ 4.0 Peer reviewed eScholarship.org Powered by the California Digital Library University of California The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies JOSEPH W. SPATAFORA,1 M. CATHERINE AIME,2 IGOR V. GRIGORIEV,3 FRANCIS MARTIN,4 JASON E. STAJICH,5 and MEREDITH BLACKWELL6 1Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331; 2Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN 47907; 3U.S. Department of Energy Joint Genome Institute, Walnut Creek, CA 94598; 4Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1136 Interactions Arbres/Microorganismes, Laboratoire d’Excellence Recherches Avancés sur la Biologie de l’Arbre et les Ecosystèmes Forestiers (ARBRE), Centre INRA-Lorraine, 54280 Champenoux, France; 5Department of Plant Pathology and Microbiology and Institute for Integrative Genome Biology, University of California–Riverside, Riverside, CA 92521; 6Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803 and Department of Biological Sciences, University of South Carolina, Columbia, SC 29208 ABSTRACT The kingdom Fungi is one of the more diverse INTRODUCTION clades of eukaryotes in terrestrial ecosystems, where they In 1996 the genome of Saccharomyces cerevisiae was provide numerous ecological services ranging from published and marked the beginning of a new era in decomposition of organic matter and nutrient cycling to beneficial and antagonistic associations with plants and fungal biology (1). -
A List of the Terrestrial Fungi, Flora and Fauna of Madeira and Selvagens Archipelagos
Listagem dos fungos, flora e fauna terrestres dos arquipélagos da Madeira e Selvagens A list of the terrestrial fungi, flora and fauna of Madeira and Selvagens archipelagos Coordenadores | Coordinators Paulo A. V. Borges, Cristina Abreu, António M. Franquinho Aguiar, Palmira Carvalho, Roberto Jardim, Ireneia Melo, Paulo Oliveira, Cecília Sérgio, Artur R. M. Serrano e Paulo Vieira Composição da capa e da obra | Front and text graphic design DPI Cromotipo – Oficina de Artes Gráficas, Rua Alexandre Braga, 21B, 1150-002 Lisboa www.dpicromotipo.pt Fotos | Photos A. Franquinho Aguiar; Dinarte Teixeira João Paulo Mendes; Olga Baeta (Jardim Botânico da Madeira) Impressão | Printing Tipografia Peres, Rua das Fontaínhas, Lote 2 Vendas Nova, 2700-391 Amadora. Distribuição | Distribution Secretaria Regional do Ambiente e dos Recursos Naturais do Governo Regional da Madeira, Rua Dr. Pestana Júnior, n.º 6 – 3.º Direito. 9054-558 Funchal – Madeira. ISBN: 978-989-95790-0-2 Depósito Legal: 276512/08 2 INICIATIVA COMUNITÁRIA INTERREG III B 2000-2006 ESPAÇO AÇORES – MADEIRA - CANÁRIAS PROJECTO: COOPERACIÓN Y SINERGIAS PARA EL DESARROLLO DE LA RED NATURA 2000 Y LA PRESERVACIÓN DE LA BIODIVERSIDAD DE LA REGIÓN MACARONÉSICA BIONATURA Instituição coordenadora: Dirección General de Política Ambiental del Gobierno de Canarias Listagem dos fungos, flora e fauna terrestres dos arquipélagos da Madeira e Selvagens A list of the terrestrial fungi, flora and fauna of Madeira and Selvagens archipelagos COORDENADO POR | COORDINATED BY PAULO A. V. BORGES, CRISTINA ABREU, -
Potato Wart Disease
Potato Wart Disease Why the concern? Potato wart disease, caused by the soil-borne fungus Synchytrium endobioticum, affects cultivated potato and a number of wild Solanum species. It was once the most serious disease of potato but has now been controlled by statutory measures and the development of ‘immune’ varieties. However, it still poses a significant threat to potato production because the spores of the fungus can remain viable in contaminated soil for many years. Also, new strains of the fungus, capable of attacking potato varieties that were previously resistant, have developed in several European countries. Preventing the spread of these strains to the UK is especially important. Severe infection of potato tuber Where is it found? It is thought that the disease was first introduced to Europe with breeding material from the South American Andes in the aftermath of the 1840–50 potato blight disaster. Potato wart disease then spread to nearly all potato growing countries in Europe, until statutory measures finally restricted its spread. In most European countries, including the UK, it is now found only locally. Its distribution is very limited in other parts of the world. What does it look like? Potato tubers showing outgrowths from the eyes Symptoms usually appear only on tubers and stolons (underground stems), therefore the disease is often not noticed until the tubers are lifted; true roots are never affected. However, infected plants may occasionally produce symptoms above ground including a reduction in vigour and with small, greenish-yellow warty growths at the stem base. On infected tubers, the eyes develop into characteristic warty, cauliflower-like swellings.