Silyl-Protective Groups Influencing the Reactivity and Selectivity in Glycosylations
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A Thesis Entitled Thio-Arylglycosides with Various Aglycon Para-Substituents, a Useful Tool for Mechanistic Investigation Of
A Thesis entitled Thio-arylglycosides with Various Aglycon Para-Substituents, a Useful Tool for Mechanistic Investigation of Chemical Glycosylations by Xiaoning Li Submitted as partial fulfillment of the requirements for the Master of Science Degree in Chemistry ___________________________ Advisor: Dr. Xuefei Huang ___________________________ College of Graduate Studies The University of Toledo August 2007 An Abstract of Thio-arylglycosides with Various Aglycon Para-Substituents, a Useful Tool for Mechanistic Investigation of Chemical Glycosylations by Xiaoning Li Submitted as partial fulfillment of the requirements for the Master of Science Degree in Chemistry The University of Toledo August 2007 Oligosaccharides are usually found as protein or lipid conjugates in cellular systems. They play crucial roles in many biological processes. Among many approaches, organic synthesis is a very important way to obtain the desired oligosaccharides for biological studies. To date, no general synthetic procedures are available for oligosaccharide synthesis. Laborious synthetic transformations are generally required in order to obtain the desired regio- and/or stereo-selective control in oligosaccharide synthesis, due to their diverse and complex structures and many chemical equivalent ii hydroxyl functional groups. To achieve a rapid synthetic routine with high yields, a key step - glycosylation in oligosaccharide synthesis needs to be well understood. Thus an insight into the mechanism of glycosylation will provide valuable information potentially leading to the development of generalized glycosylation method. In this work, kinetic properties of glycosylation were evaluated by model reactions between three different series of glycosyl donors and three different glycosyl acceptors. The glycosylation mechanism was analyzed in the context of a linear-free energy relationship. -
1 General Aspects of the Glycosidic Bond Formation Alexei V
j1 1 General Aspects of the Glycosidic Bond Formation Alexei V. Demchenko 1.1 Introduction Since the first attempts at the turn of the twentieth century, enormous progress has been made in the area of the chemical synthesis of O-glycosides. However, it was only in the past two decades that the scientificworldhadwitnessedadramatic improvement the methods used for chemical glycosylation. The development of new classes of glycosyl donors has not only allowed accessing novel types of glycosidic linkages but also led to the discovery of rapid and convergent strategies for expeditious oligosaccharide synthesis. This chapter summarizes major prin- ciples of the glycosidic bond formation and strategies to obtain certain classes of compounds, ranging from glycosides of uncommon sugars to complex oligosac- charide sequences. 1.2 Major Types of O-Glycosidic Linkages There are two major types of O-glycosides, which are, depending on nomen- clature, most commonly defined as a-andb-, or 1,2-cis and 1,2-trans glycosides. The 1,2-cis glycosyl residues, a-glycosides for D-glucose, D-galactose, L-fucose, D-xylose or b-glycosides for D-mannose, L-arabinose, as well as their 1,2-trans counter- parts (b-glycosides for D-glucose, D-galactose, a-glycosides for D-mannose,etc.),are equally important components in a variety of natural compounds. Representative examples of common glycosides are shown in Figure 1.1. Some other types of glycosides, in particular 2-deoxyglycosides and sialosides, can be defined neither as 1,2-cis nor as 1,2-trans derivatives, yet are important targets because of their com- mon occurrence as components of many classes of natural glycostructures. -
Application of the Picoloyl Group in Carbohydrate Chemistry
University of Missouri, St. Louis IRL @ UMSL Dissertations UMSL Graduate Works 4-5-2019 Application of the Picoloyl Group in Carbohydrate Chemistry Michael Mannino University of Missouri-St. Louis, [email protected] Follow this and additional works at: https://irl.umsl.edu/dissertation Part of the Organic Chemistry Commons Recommended Citation Mannino, Michael, "Application of the Picoloyl Group in Carbohydrate Chemistry" (2019). Dissertations. 818. https://irl.umsl.edu/dissertation/818 This Dissertation is brought to you for free and open access by the UMSL Graduate Works at IRL @ UMSL. It has been accepted for inclusion in Dissertations by an authorized administrator of IRL @ UMSL. For more information, please contact [email protected]. Application of the Picoloyl Group in Carbohydrate Chemistry By Michael P. Mannino Master of Science (Chemistry), University of Missouri-St. Louis, May 2016 Bachelor of Science (Chemistry), University of Missouri-St. Louis, May 2014 A Dissertation Submitted to the Graduate School of the UNIVERSITY OF MISSOURI – ST. LOUIS in Partial Fulfillment of the Requirements for the Degree of DOCTOR OF PHILOSOPHY in CHEMISTRY May, 2019 Dissertation Committee Prof. Alexei V. Demchenko, Ph.D. (Chair) Prof. Cynthia M. Dupureur, Ph.D. Prof. Christopher D. Spilling, Ph.D. Prof. Michael R. Nichols, Ph.D. ABSTRACT Application of the Picoloyl Substituent in Carbohydrate Chemistry Michael P. Mannino Doctor of Philosophy, University of Missouri – St. Louis Prof. Alexei V. Demchenko, Advisor Stereocontrol of glycosylation reactions is a constant struggle in the field of synthetic carbohydrate chemistry. The application of the picoloyl (Pico) substituent can offer numerous stereocontrolling avenues. The most popular application is the Hydrogen-bond-mediated Aglycone Delivery (HAD) method that provides excellent selectivity in the glycosylation of a variety of sugar substrates. -
3.7 Anomeric Anhydro Sugars 737 Nathan W
Table of Contents Volume 1 1 General Principles 1 1.1 Structure and Conformation of Carbohydrates 3 T. Bruce Grindley 1.2 General Properties, Occurrence, and Preparation of Carbohydrates 57 John F. Robyt 2 General Synthetic Methods 101 2.1 Reactions at Oxygen Atoms 103 Ana M. Gomez 2.2 Oxidation, Reduction, and Deoxygenation 179 Robert Madsen 2.3 Heteroatom Exchange 227 Yuhang Wang, Xin-Shan Ye 2.4 Anhydrosugars 271 Slawomir Jarosz, Marcin Nowogmdzki 2.5 C-C Bond Formation 305 Yuguo Du, Qi Chen, Jim Liu 2.6 C=C Bond Formation 343 Slawomir Jarosz, Marcin Nowogrodzki 2.7 Degradations and Rearrangement Reactions 375 Jianbo Zhang Bibliografische Informationen digitalisiert durch http://d-nb.info/980124565 gescannt durch Table of Contents 3 Chemical Glycosylation Reactions 427 3.1 Glycosyl Halides 429 Kazunobu Toshima 3.2 Glycosyl Trichloroacetimidates 451 Richard R. Schmidt, Xiangming Zhu 3.3 Further Anomeric Esters 525 Kwan Soo Kim, Heung Bae Jeon 3.4 O-Glycosyl Donors 565 J. Cristobal Lopez 3.5 S-Glycosylation 661 Stefan Oscarson 3.6 Glycal Derivatives 699 Waldemar Priebe, Izabela Fokt, Grzegorz Grynkiewicz 3.7 Anomeric Anhydro Sugars 737 Nathan W. McGill, Spencer J. Williams 3.8 C-Glycosylation 755 Toshio Nishikawa, Masaatsu Adachi, Minoru Isobe Volume 2 4 Monosaccharides 813 4.1 Monosaccharides: Occurrence, Significance, and Properties . 815 Zbigniew J. Witczak 4.2 Monosaccharides and Polyols in Foods 841 Robert B. Friedman 4.3 De novo Synthesis of Monosaccharides 857 Pierre Vogel, Inmaculada Robina 4.4 Monosaccharides as Chiral Pools for the Synthesis of Complex Natural Compounds 957 Masaya Nakata Table of Contents XI 4.5 Monosaccharides as Scaffolds for the Synthesis of Novel Compounds 995 Paul V. -
A Propos of Glycosyl Cations and the Mechanism of Chemical Glycosylation; the Current State of The
Carbohydrate Research 403 (2015) 48–59 Contents lists available at ScienceDirect Carbohydrate Research journal homepage: www.elsevier.com/locate/carres A propos of glycosyl cations and the mechanism of chemical glycosylation; the current state of the art ⇑ Luis Bohé a, David Crich b, a Centre de Recherche de Gif, CNRS, Institut de Chimie des Substances Naturelles, Avenue de la Terrasse, 91198 Gif-sur-Yvette, France b Department of Chemistry, Wayne State University, 5101 Cass Ave, Detroit, MI 48202, USA article info abstract Article history: An overview of recent advances in glycosylation with particular emphasis on mechanism is presented. Received 25 April 2014 The mounting evidence for both the existence of glycosyl oxocarbenium ions as fleeting intermediates Received in revised form 16 June 2014 in some reactions, and the crucial role of the associated counterion in others is discussed. The extremes Accepted 19 June 2014 of the S 1 and S 2 manifolds for the glycosylation reaction are bridged by a continuum of mechanisms in Available online 1 July 2014 N N which it appears likely that most examples are located. Ó 2014 Elsevier Ltd. All rights reserved. Keywords: Oxocarbenium ions Counter ions Hydrogen bonding Kinetics 1. Introduction characteristics of one or the other of the two extremes without meeting the entire set of Ingoldian criteria that establish the In 2010, a propos of glycosyl cations and the mechanism of limiting mechanisms. chemical glycosylation, we surveyed critically the evidence for and against the existence of glycosyl oxocarbenium ions as inter- 2. Generation of glycosyl oxocarbenium ions and spectroscopic mediates in glycosylation reactions and discussed the influence evidence for them of a number of factors, including protecting groups, solvents, and additives on these reactions which are fundamental to glyco- Continuing their work on the generation of carbocations in 1 science. -
Thioglycoside Activation Using Bismuth(V) Chemistry Manibarsha Goswami Iowa State University
Iowa State University Capstones, Theses and Graduate Theses and Dissertations Dissertations 2014 Thioglycoside activation using bismuth(V) chemistry Manibarsha Goswami Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/etd Part of the Organic Chemistry Commons Recommended Citation Goswami, Manibarsha, "Thioglycoside activation using bismuth(V) chemistry" (2014). Graduate Theses and Dissertations. 14139. https://lib.dr.iastate.edu/etd/14139 This Dissertation is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. Thioglycoside activation using bismuth(V) chemistry by Manibarsha Goswami A dissertation submitted to the graduate faculty in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY Major: Chemistry (Organic Chemistry) Program of Study Committee: Nicola L. B. Pohl, Co-major Professor Jason S. Chen, Co-major Professor Surya K. Mallapragada Levi M. Stanley Arthur H. Winter Iowa State University Ames, Iowa 2014 Copyright © Manibarsha Goswami, 2014. All rights reserved. ii TABLE OF CONTENTS Page ACKNOWLEDGEMENTS iv LIST OF ABBREVIATIONS vii ABSTRACT ix CHAPTER 1: THIOGLYCOSIDES AS IMPORTANT GLYCOSYL DONORS 1 Introduction 1 Oligosaccharides 1 Thioglycosides: synthesis, advantages -
Abstract Book [PDF]
Table of Contents The 37th Steenbock Symposium Page 1 General Information e Future of Chemical Biology 2 Support Staff 3 About Harry Steenbock e symposium will bring together leading 3 Area Map scientists in the eld of chemical biology to discuss their most recent research activities. 4 - 5 Schedule 6 Sponsors Presentations will cover topics including: 7 Symposium Organizer • Natural Products 8 - 9 Speaker Index • Small Molecule Modulators 9 Chair Index • Post-translational Modification 10 - 57 Speaker Bios & Abstracts • Imaging 58 - 62 Poster Presenter Index • Protein Quality Control 64 - 149 Poster Abstracts • Chemistry for Chemical Biology 151- 155 Attendees General Information Name Badges Symposium participants are requested to wear the name badge during all conference activities. Registration Pick up conference materials on Thursday, June 5th, 5:00-6:50 pm Ebling Symposium Center Lobby, Microbial Sciences Building, 1550 Linden Drive. Opening Reception Thursday, June 5th, 5:00-6:50 pm. Welcoming and Keynote speakers starting at 7:00 pm. Ebling Symposium Center Lobby, Microbial Sciences Building, 1550 Linden Drive. Scientific Talks All talks will be in the Ebling Symposium Center, Microbial Sciences Building, 1550 Linden Drive. Talks begin at 8:55 am on Friday and conclude by 5:00 pm Saturday. Breakfast & Lunches Friday and Saturday. Please wear your name badge. Registration fee includes breakfasts, breaks and lunches. See schedule for locations. Poster Sessions Poster Session 1: Friday 12:30-1:40 pm, HF DeLuca Biochemistry Laboratories, 433 Babcock Drive Posters can go up starting at 7:00 am Friday. To be taken down at the end of the poster session. -
Sugar Silanes: Versatile Reagents for Stereocontrolled Glycosylation Via Intramolecular Delivery by Jordan Thomas Walk
Sugar Silanes: Versatile Reagents for Stereocontrolled Glycosylation via Intramolecular Delivery by Jordan Thomas Walk A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy (Chemistry) in the University of Michigan 2015 Doctoral Committee: Professor John Montgomery, Chair Assistant Professor Amanda L. Garner Assistant Professor Pavel Nagorny Professor John P. Wolfe Dedication To my mother and my grandparents. Without their strength, character, and support, I could never have accomplished the things that I have. ii Acknowledgments First and foremost, I am most grateful for my family. I have been surrounded by incredible people my entire life. It was only with your love that I have achieved what I have. My success is your success. John Montgomery has provided wonderful guidance and mentorship as my career has developed. I’d also like to thank John Wolfe, Pavel Nagorny, Amanda Garner, and Jason Gestwicki for their insights into the sugar silane project. I’ve had the great pleasure of working next to wonderful people in the Montgomery Lab. More than coworkers, these friends have enriched my life and helped to create memories that I will always cherish. Last but not least, I love Kelli Sullivan with all of my heart. iii Table of Contents Dedication .......................................................................................................................... ii Acknowledgements ........................................................................................................ -
Selective Glycosylations: Synthetic Methods and Catalysts
Selective Glycosylations: Synthetic Methods and Catalysts Selective Glycosylations Synthetic Methods and Catalysts Edited by Clay S. Bennett Editor All books published by Wiley-VCH are carefully produced. Nevertheless, authors, editors, and Prof. Clay S. Bennett publisher do not warrant the information contained Tufts University in these books, including this book, to be free of Department of Chemistry errors. Readers are advised to keep in mind that 62 Talbot Ave. statements, data, illustrations, procedural details or Medford, MA 02155 other items may inadvertently be inaccurate. United States Cover Library of Congress Card No.: applied for British Library Cataloguing-in-Publication Data The cover image was kindly provided by the Editor A catalogue record for this book is available from the British Library. Bibliographic information published by the Deutsche Nationalbibliothek The Deutsche Nationalbibliothek lists this publication in the Deutsche Nationalbibliografie; detailed bibliographic data are available on the Internet at http://dnb.d-nb.de. © 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Boschstr. 12, 69469 Weinheim, Germany All rights reserved (including those of translation into other languages). No part of this book may be reproduced in any form – by photoprinting, microfilm, or any other means – nor transmitted or translated into a machine language without written permission from the publishers. Registered names, trademarks, etc. used in this book, even when not specifically marked as such, are not to be considered unprotected by law. Print ISBN: 978-3-527-33987-7 ePDF ISBN: 978-3-527-69622-2 ePub ISBN: 978-3-527-69624-6 Mobi ISBN: 978-3-527-69625-3 oBook ISBN: 978-3-527-69623-9 Cover Design Schulz Grafik-Design, Fußgönheim, Germany Typesetting SPi Global, Chennai, India Printed on acid-free paper v Contents List of Contributors xi Preface xv Part I Introduction 1 1 Stereoselective Glycosylations – Additions to Oxocarbenium Ions 3 Bas Hagen, Stefan van der Vorm, Thomas Hansen, Gijs A. -
Aspects of Chemical Transglycosylations in Modern Glycoside Synthesis† Anupama Das and N
Special Issue on "Synthetic Carbohydrate Chemistry" J. Indian Chem. Soc., Vol. 97, February 2020, pp. 135-156 Aspects of chemical transglycosylations in modern glycoside synthesis† Anupama Das and N. Jayaraman* Department of Organic Chemistry, Indian Institute of Science, Bangalore- 560 012, India E-mail: [email protected] Manuscript received online 08 November 2019, revised and accepted 23 December 2019 Application of chemical methods forms as a powerful approach to achieve synthesis of custom-designed oligosaccharides. Chemical glycosylation methods continue to evolve till date even when the first such method dates back more than a century ago. The recent past has witnessed the emergence of the transglycosylations, wherein a preponderant O-glycoside acts as a glycosyl donor to afford yet another O-glycoside product bearing the newly introduced glycan/aglycan at the reducing end. Critical requirements of the aglycan portion of a glycoside donor are discussed, as also the mechanistic formulations based on a set of experimental observations. A critical review of the expanding facets of transglycosylations in the garb of modern glycosylation methods is presented herein. Keywords: Carbohydrates, conformations, glycosylations, oligosaccharides, oxocarbenium ion. 1. Introduction of the anomeric substituent as the leaving moiety. The re- Chemical glycosylations constitute to be one of the ma- sulting oxocarbenium ion acts as the reactive intermediate jor concurrent advancements in the general area in carbohy- to react with a glycosyl acceptor nucleophile and yield the drate chemistry1. Multiple hydroxyl groups containing sug- glycoside product. Chemical glycosylations to date practi- ars present a plethora of challenges at the outset, yet a judi- cally relied on the generation of the oxocarbenium ion as the cious underpinning of the reactivities of each hydroxyl groups intermediate. -
Protecting Groups in Carbohydrate Chemistry: Influence on Stereoselectivity of Glycosylations
Molecules 2010, 15, 7235-7265; doi:10.3390/molecules15107235 OPEN ACCESS molecules ISSN 1420-3049 www.mdpi.com/journal/molecules Review Protecting Groups in Carbohydrate Chemistry: Influence on Stereoselectivity of Glycosylations Jian Guo and Xin-Shan Ye * State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Xue Yuan Rd No.38, Beijing 100191, China; E-Mail: [email protected] (J.G.) * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +86 10-82801570; Fax: +86-10-62014949. Received: 5 September 2010 / Accepted: 15 October 2010 / Published: 20 October 2010 Abstract: Saccharides are polyhydroxy compounds, and their synthesis requires complex protecting group manipulations. Protecting groups are usually used to temporarily mask a functional group which may interfere with a certain reaction, but protecting groups in carbohydrate chemistry do more than protecting groups usually do. Particularly, protecting groups can participate in reactions directly or indirectly, thus affecting the stereochemical outcomes, which is important for synthesis of oligosaccharides. Herein we present an overview of recent advances in protecting groups influencing stereoselectivity in glycosylation reactions, including participating protecting groups, and conformation- constraining protecting groups in general. Keywords: protecting group; stereoselectivity; glycosylation; carbohydrate Abbreviations Ac acetyl ADMB 4-acetoxy-2,2-dimethylbutanoyl Bac bacillosamine Bn benzyl -
Handbook of Chemical Glycosylation
Handbook of Chemical Glycosylation Advances in Stereoselectivity and Therapeutic Relevance Edited by Alexei V. Demchenko Handbook of Chemical Glycosylation Edited by Alexei V. Demchenko Further Reading Seeberger, P. H., Werz, D. (eds.) Automated Carbohydrate Synthesis 2008 ISBN: 978-3-527-31875-9 Kollár, L. (ed.) Modern Carbonylation Methods 2008 ISBN: 978-3-527-31896-4 Lindhorst, T. K.(ed.) Essentials of Carbohydrate Chemistry and Biochemistry 2007 ISBN: 978-3-527-31528-4 Kinzel, T., Major, F., Raith, C., Redert, T. Stecker, F. Tölle, N., Zinngrebe, J. Organic Synthesis Workbook III 2007 ISBN: 978-3-527-31665-6 Yudin, A. K. (ed.) Aziridines and Epoxides in Organic Synthesis 2006 ISBN: 978-3-527-31213-9 Handbook of Chemical Glycosylation Advances in Stereoselectivity and Therapeutic Relevance Edited by Alexei V. Demchenko The Editor All books published by Wiley-VCH are carefully produced. Nevertheless, authors, editors, and Prof. Dr. Alexei V. Demchenko publisher do not warrant the information contained University of Missouri in these books, including this book, to be free of 434 Benton Hall (MC27) errors. Readers are advised to keep in mind that One University Boulevard statements, data, illustrations, procedural details or St. Louis, MO 63121-4499 other items may inadvertently be inaccurate. USA Library of Congress Card No.: applied for British Library Cataloguing-in-Publication Data A catalogue record for this book is available from the British Library. Bibliographic information published by the Deutsche Nationalbibliothek Die Deutsche Nationalbibliothek lists this publication in the Deutsche Nationalbibliografie; detailed bibliographic data are available on the Internet at <http://dnb.d-nb.de>. # 2008 WILEY-VCH Verlag GmbH & Co.