Anomeric O-Functionalization of Carbohydrates for Chemical Conjugation to Vaccine Constructs
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STEREOSELECTIVE GLYCOSYLATIONS and SYNTHESIS of HYALURONAN BIOSYNTHESIS INHIBITORS by Gilbert Ochieng Wasonga a THESIS Submitted
STEREOSELECTIVE GLYCOSYLATIONS AND SYNTHESIS OF HYALURONAN BIOSYNTHESIS INHIBITORS By Gilbert Ochieng Wasonga A THESIS Submitted to Michigan State University in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE CHEMISTRY 2010 1 ABSTRACT STEREOSELECTIVE GLYCOSYLATIONS AND SYNTHESIS OF HYALURONAN SYNTHESIS INHIBITORS By Gilbert Ochieng Wasonga Stereochemical control is an important issue in carbohydrate synthesis. Glycosyl donors with participating acyl protective groups on 2-O have been shown to give 1,2-trans glycosides reliably under the pre-activation based reaction condition. In this work, the effects of additives and reaction solvent on stereoselectivity was examined using donors without participating protective groups on 2-O. We have established that the stereoselectivity could be directed by reaction solvent. The trend of stereochemical dependence on reaction solvent was applicable to a variety of reactions including the selective formation of β-mannosides. In the second part, 3-MeO-GlcNAc is efficiently prepared using a furanose oxazoline intermediate which is well suited for large scale synthesis without the need for extensive column chromatography. In addition, we have developed a robust and rapid procedure for the synthesis of 3-F-GlcNAc derivative required for inhibition studies of hyaluronan biosynthesis. In the course of our synthesis, we have shown the expanded utility of Lattrell-Dax method for carbohydrate epimerization reactions. II ACKNOWLEDGMENTS I would like to thank my advisor Professor Xuefei Huang for his guidance and support that have been instrumental in my graduate studies. Along the way, I have had the opportunity to be mentored by Doctor Youlin Zeng who was a very helpful mentor at the beginning of my chemistry research experience and I will always be grateful to him. -
The First General Electron Transfer Reductions of Carboxylic Acid Derivatives Using Samarium Diiodide
The First General Electron Transfer Reductions of Carboxylic Acid Derivatives Using Samarium Diiodide A thesis submitted to The University of Manchester for the degree of Doctor of Philosophy In the faculty of Engineering and Physical Sciences 2014 Malcolm Peter Spain School of Chemistry Malcolm Spain PhD Thesis Contents Abstract .................................................................................................................... 5 Declaration................................................................................................................ 6 Copyright statement .................................................................................................. 7 Acknowledgements ................................................................................................... 9 Abbreviations .......................................................................................................... 10 Chapter 1. Introduction ........................................................................................... 13 1.1 Introduction to samarium diiodide .................................................................. 13 1.2 Reduction of ketones and aldehydes ............................................................. 15 1.3 Reduction of carboxylic acid derivatives ....................................................... 23 Chapter 2. Investigations of the SmI2–H2O system ................................................. 27 2.0 Preliminary studies of the SmI2–H2O system ................................................ -
Reductions and Reducing Agents
REDUCTIONS AND REDUCING AGENTS 1 Reductions and Reducing Agents • Basic definition of reduction: Addition of hydrogen or removal of oxygen • Addition of electrons 9:45 AM 2 Reducible Functional Groups 9:45 AM 3 Categories of Common Reducing Agents 9:45 AM 4 Relative Reactivity of Nucleophiles at the Reducible Functional Groups In the absence of any secondary interactions, the carbonyl compounds exhibit the following order of reactivity at the carbonyl This order may however be reversed in the presence of unique secondary interactions inherent in the molecule; interactions that may 9:45 AM be activated by some property of the reacting partner 5 Common Reducing Agents (Borohydrides) Reduction of Amides to Amines 9:45 AM 6 Common Reducing Agents (Borohydrides) Reduction of Carboxylic Acids to Primary Alcohols O 3 R CO2H + BH3 R O B + 3 H 3 2 Acyloxyborane 9:45 AM 7 Common Reducing Agents (Sodium Borohydride) The reductions with NaBH4 are commonly carried out in EtOH (Serving as a protic solvent) Note that nucleophilic attack occurs from the least hindered face of the 8 carbonyl Common Reducing Agents (Lithium Borohydride) The reductions with LiBH4 are commonly carried out in THF or ether Note that nucleophilic attack occurs from the least hindered face of the 9:45 AM 9 carbonyl. Common Reducing Agents (Borohydrides) The Influence of Metal Cations on Reactivity As a result of the differences in reactivity between sodium borohydride and lithium borohydride, chemoselectivity of reduction can be achieved by a judicious choice of reducing agent. 9:45 AM 10 Common Reducing Agents (Sodium Cyanoborohydride) 9:45 AM 11 Common Reducing Agents (Reductive Amination with Sodium Cyanoborohydride) 9:45 AM 12 Lithium Aluminium Hydride Lithium aluminiumhydride reacts the same way as lithium borohydride. -
CHE202 Reductions and Heterocycles
CHE202 Structure & Reactivity in Organic Chemistry: ! Reduction Reactions and Heterocyclic Chemistry! 9 lectures, Semester B 2014! Dr. Chris Jones! ! [email protected]! Office: 1.07 Joseph Priestley Building! ! Office hours:! 9.30-10.30 am Tuesday! 1.30-2.30 pm Thursday (by appointment only)! Course structure and recommended texts! 2! §" Coursework:! !Semester B – week 9 ! !5% (‘Coursework 7’)! !Semester B – week 11! !5% (‘Coursework 8’)! ! §" Test:! !Semester B – week 12! !15% (‘Test 4’)! §" Recommended text books:! ‘Organic Chemistry’, Clayden, ‘Oxidation & Reduction in ‘Heterocyclic Chemistry’, Greeves & Warren, OUP, 2012.! Organic Chemistry’, Donohoe, Joule & Mills, Wiley, 2010.! OUP, 2000.! Don’t forget clickers! Overview of Reduction Chemistry lecture material! 3! §" Reduction:! - Definition (recap.)! - Reduction of carbon-carbon double and triple bonds! - Heterogeneous hydrogenation! - Homogeneous hydrogenation, including stereoselective hydrogenation! - Dissolved metal reductions! - Other methods of reduction! - Reduction of carbon-heteroatom double and triple bonds! - Reduction of carbonyl derivatives, addressing chemoselectivity! - Stereoselective reduction of carbonyl derivatives! - Reduction of imines and nitriles! - Reductive cleavage reactions! - Hydrogenolysis of benzyl and allyl groups! - Dissolved metal reduction! - Deoxygenation reactions! - Reduction of heteroatom functional groups! e.g. azides, nitro groups, N-O bond cleavage! Reduction: definition! 4! §" Reduction of an organic substrate can be defined as:! - The concerted -
Chemical Modification of Single-Walled Carbon Nanotubes Via Alkali Metal Reduction
A 677 OULU 2016 A 677 UNIVERSITY OF OULU P.O. Box 8000 FI-90014 UNIVERSITY OF OULU FINLAND ACTA UNIVERSITATISUNIVERSITATIS OULUENSISOULUENSIS ACTA UNIVERSITATIS OULUENSIS ACTAACTA SCIENTIAESCIENTIAEA A RERUMRERUM Elina Pulkkinen NATURALIUMNATURALIUM Elina Pulkkinen Professor Esa Hohtola CHEMICAL MODIFICATION University Lecturer Santeri Palviainen OF SINGLE-WALLED CARBON Postdoctoral research fellow Sanna Taskila NANOTUBES VIA ALKALI METAL REDUCTION Professor Olli Vuolteenaho University Lecturer Veli-Matti Ulvinen Director Sinikka Eskelinen Professor Jari Juga University Lecturer Anu Soikkeli Professor Olli Vuolteenaho UNIVERSITY OF OULU GRADUATE SCHOOL; UNIVERSITY OF OULU, FACULTY OF SCIENCE Publications Editor Kirsti Nurkkala ISBN 978-952-62-1243-2 (Paperback) ISBN 978-952-62-1244-9 (PDF) ISSN 0355-3191 (Print) ISSN 1796-220X (Online) ACTA UNIVERSITATIS OULUENSIS A Scientiae Rerum Naturalium 677 ELINA PULKKINEN CHEMICAL MODIFICATION OF SINGLE-WALLED CARBON NANOTUBES VIA ALKALI METAL REDUCTION Academic dissertation to be presented with the assent of the Doctoral Training Committee of Technology and Natural Sciences of the University of Oulu for public defence in the Arina auditorium (TA105), Linnanmaa, on 15 June 2016, at 12 noon UNIVERSITY OF OULU, OULU 2016 Copyright © 2016 Acta Univ. Oul. A 677, 2016 Supervised by Professor Marja Lajunen Doctor Janne Asikkala Reviewed by Professor Markku Leskelä Professor Mika Pettersson Opponent Professor Tuula Pakkanen ISBN 978-952-62-1243-2 (Paperback) ISBN 978-952-62-1244-9 (PDF) ISSN 0355-3191 (Printed) ISSN 1796-220X (Online) Cover Design Raimo Ahonen JUVENES PRINT TAMPERE 2016 Pulkkinen, Elina, Chemical modification of single-walled carbon nanotubes via alkali metal reduction. University of Oulu Graduate School; University of Oulu, Faculty of Science Acta Univ. -
2 Reactions Observed with Alkanes Do Not Occur with Aromatic Compounds 2 (SN2 Reactions Never Occur on Sp Hybridized Carbons!)
Reactions of Aromatic Compounds Aromatic compounds are stabilized by this “aromatic stabilization” energy Due to this stabilization, normal SN2 reactions observed with alkanes do not occur with aromatic compounds 2 (SN2 reactions never occur on sp hybridized carbons!) In addition, the double bonds of the aromatic group do not behave similar to alkene reactions Aromatic Substitution While aromatic compounds do not react through addition reactions seen earlier Br Br Br2 Br2 FeBr3 Br With an appropriate catalyst, benzene will react with bromine The product is a substitution, not an addition (the bromine has substituted for a hydrogen) The product is still aromatic Electrophilic Aromatic Substitution Aromatic compounds react through a unique substitution type reaction Initially an electrophile reacts with the aromatic compound to generate an arenium ion (also called sigma complex) The arenium ion has lost aromatic stabilization (one of the carbons of the ring no longer has a conjugated p orbital) Electrophilic Aromatic Substitution In a second step, the arenium ion loses a proton to regenerate the aromatic stabilization The product is thus a substitution (the electrophile has substituted for a hydrogen) and is called an Electrophilic Aromatic Substitution Energy Profile Transition states Transition states Intermediate Potential E energy H Starting material Products E Reaction Coordinate The rate-limiting step is therefore the formation of the arenium ion The properties of this arenium ion therefore control electrophilic aromatic substitutions (just like any reaction consider the stability of the intermediate formed in the rate limiting step) 1) The rate will be faster for anything that stabilizes the arenium ion 2) The regiochemistry will be controlled by the stability of the arenium ion The properties of the arenium ion will predict the outcome of electrophilic aromatic substitution chemistry Bromination To brominate an aromatic ring need to generate an electrophilic source of bromine In practice typically add a Lewis acid (e.g. -
Carbohydrates: Occurrence, Structures and Chemistry
Carbohydrates: Occurrence, Structures and Chemistry FRIEDER W. LICHTENTHALER, Clemens-Schopf-Institut€ fur€ Organische Chemie und Biochemie, Technische Universit€at Darmstadt, Darmstadt, Germany 1. Introduction..................... 1 6.3. Isomerization .................. 17 2. Monosaccharides ................. 2 6.4. Decomposition ................. 18 2.1. Structure and Configuration ...... 2 7. Reactions at the Carbonyl Group . 18 2.2. Ring Forms of Sugars: Cyclic 7.1. Glycosides .................... 18 Hemiacetals ................... 3 7.2. Thioacetals and Thioglycosides .... 19 2.3. Conformation of Pyranoses and 7.3. Glycosylamines, Hydrazones, and Furanoses..................... 4 Osazones ..................... 19 2.4. Structural Variations of 7.4. Chain Extension................ 20 Monosaccharides ............... 6 7.5. Chain Degradation. ........... 21 3. Oligosaccharides ................. 7 7.6. Reductions to Alditols ........... 21 3.1. Common Disaccharides .......... 7 7.7. Oxidation .................... 23 3.2. Cyclodextrins .................. 10 8. Reactions at the Hydroxyl Groups. 23 4. Polysaccharides ................. 11 8.1. Ethers ....................... 23 5. Nomenclature .................. 15 8.2. Esters of Inorganic Acids......... 24 6. General Reactions . ............ 16 8.3. Esters of Organic Acids .......... 25 6.1. Hydrolysis .................... 16 8.4. Acylated Glycosyl Halides ........ 25 6.2. Dehydration ................... 16 8.5. Acetals ....................... 26 1. Introduction replacement of one or more hydroxyl group (s) by a hydrogen atom, an amino group, a thiol Terrestrial biomass constitutes a multifaceted group, or similar heteroatomic groups. A simi- conglomeration of low and high molecular mass larly broad meaning applies to the word ‘sugar’, products, exemplified by sugars, hydroxy and which is often used as a synonym for amino acids, lipids, and biopolymers such as ‘monosaccharide’, but may also be applied to cellulose, hemicelluloses, chitin, starch, lignin simple compounds containing more than one and proteins. -
Total Synthesis of Zwitterionic Bacterial Polysaccharide (PS A1) Antigen Fragments
A Dissertation Titled: Total Synthesis of Zwitterionic Bacterial Polysaccharide (PS A1) Antigen Fragments from B. fragilis ATCC 25285/NCTC 9343 with Alternating Charges on Adjacent Monosaccharides by Pradheep Eradi Submitted to the Graduate Faculty as partial fulfillment of the requirements for the Doctor of Philosophy Degree in Chemistry ___________________________________________ Dr. Peter R. Andreana, PhD, Committee Chair ___________________________________________ Dr. Steve Sucheck, PhD, Committee Member ___________________________________________ Dr. Jianglong Zhu, PhD, Committee Member ___________________________________________ Dr. Amanda C. Bryant-Freidrich, PhD, Committee Member ___________________________________________ Dr. Cyndee Gruden, Dean College of Graduate Studies The University of Toledo May 2019 Copyright 2019 Pradheep Eradi This document is copyrighted material. Under copyright law, no parts of this document may be reproduced without the expressed permission of the author. An Abstract of Total Synthesis of Zwitterionic Bacterial Polysaccharide (PS A1) Antigen Fragments from B. fragilis ATCC 25285/NCTC 9343 with Alternating Charges on Adjacent Monosaccharides by Pradheep Eradi Submitted to the Graduate Faculty as partial fulfillment of the requirements for the Doctor of Philosophy Degree in Chemistry The University of Toledo May 2019 Zwitterionic polysaccharides (ZPSs) are a relatively new class of carbohydrate antigens, with a paradigm shifting property; they can activate CD4+ T-cells in the absence of lipids, peptide(s) or protein(s) upon MHC class II presentation. Up until now, various anaerobic bacteria are known to express ZPSs, for example, PS A1, PS A2 and PS B (Bacteroides fragilis), Sp1 (Streptococcus pneumoniae), CP5 and CP8 (Staphylococcus aureus) and O-chain antigen (Morganella morgani). Among all the afore mentioned ZPSs, Sp1 and PS A1 polysaccharides were the prime focus of research for the past few decades and their biological properties are very well-understood. -
A Versatile Glycosylation Strategy Via Au(III) Catalyzed Activation of Thioglycoside Donors† Cite This: Chem
Chemical Science View Article Online EDGE ARTICLE View Journal | View Issue A versatile glycosylation strategy via Au(III) catalyzed activation of thioglycoside donors† Cite this: Chem. Sci.,2016,7,4259 Amol M. Vibhute, Arun Dhaka, Vignesh Athiyarath and Kana M. Sureshan* Among various methods of chemical glycosylations, glycosylation by activation of thioglycoside donors using a thiophilic promoter is an important strategy. Many promoters have been developed for the activation of thioglycosides. However, incompatibility with substrates having alkenes and the requirement of a stoichiometric amount of promoters, co-promoters and extreme temperatures are some of the limitations. We have developed an efficient methodology for glycosylation via the activation of thioglycoside donors using a catalytic amount of AuCl3 and without any co-promoter. The reaction is Received 10th February 2016 very fast, high-yielding and very facile at room temperature. The versatility of this method is evident from Accepted 4th March 2016 the facile glycosylation with both armed and disarmed donors and sterically demanding substrates DOI: 10.1039/c6sc00633g (acceptors/donors) at ambient conditions, from the stability of the common protecting groups, and from www.rsc.org/chemicalscience the compatibility of alkene-containing substrates during the reaction. Creative Commons Attribution 3.0 Unported Licence. Introduction alkenes;8 and (iv) the requirement of extremely low temperatures for the reaction. Development of novel and milder methods of Various forms of carbohydrates play important biological roles thioglycoside activation that overcome these limitations is an 5 ,6 and hence the chemical synthesis of glycoconjugates and agenda of utmost importance among chemists. g a Pohl et al. -
AP Biology Summer Assignment Holy Spirit Prep 2019
AP Biology Summer Assignment Holy Spirit Prep 2019 Textbook: “Principle of Life” 2nd edition, for the AP course 2018 Chapters 1-3 (pages 1-59) This summer assignment will cover the introduction to biology, chemistry of life, and essential macromolecules for life. The concepts covered in these chapters are either review from previous classes or relatively easy enough to allow you to work through them on your own. The more complex connections between these chapters will be discussed during the first two weeks of the school year. Biozone Workbook: “AP Biology 1” Student edition, 2nd edition 2017 and Biozone Workbook: “AP Biology 2” Student edition, 2nd edition 2017 Read each chapter in the text book, answer all the questions listed below, and complete the corresponding pages in the biozone workbooks covering those topics. The answers can be typed or handwritten for the questions below and written in the workbook for the biozone pages listed. Do not tear out the biozone workbook pages. I will check your answers directly from the workbook. This assignment will be due on Wednesday, Aug 21, 2019. We will have a test over the material during the second week of the school year. For questions, contact Mr. Harrison at [email protected] Chapter 1: Principles of Life Answer the following: 1. Organisms share many conserved biological, chemical, and structural characteristics. Briefly outline the 8 distinctive characteristics of life shared by all living organisms. 2. How do the shared characteristics on your list (in #1) provide evidence for evolution? 3. There are several competing hypotheses about the evolution of early life on Earth, but as life evolved, all cells clearly had requirements for raw materials and energy transfers. -
Aerospace Medicine & Biology Space Medicine & Biology Aero 9
Aerospace Medicine NASA SP-7011 (232) and Biology May 1982 IWNSA A Continuing Bibliography with Indexes (NASA-SP-701 1 (232) ) AT. CE MEDICINE AND N82-2898U BIOLOGY: A CONTINUING BIBLIOGRAPHY WITH INDEXES (SUPPLEMENT 232) (National Aeronautics and Space Administration) 137 p Unclas Hc <7.QQ CSCL Ofa£ 00/52 25483 National Aeronautics and Space Administration Aerospace Medicine & Biology space Medicine & Biology Aero 9 Medicine & Biology Aerospao dicine & Biology Aerospace M ne & Biology AerosjatoiMedici Biology Aerospace Medicine & gy Aerospace Medicine & Biolo 3rospace Medicine & Biology / pace Medicine & Biology Aeros Medicine & Biology Aerospace cine & Biology Aerospace Med & Biology Aerospace Medicine < ACCESSION NUMBER RANGES Accession numbers cited in this Supplement fall within the following ranges. STAR (N-10000 Series) N82-16040 - N82-18118 IAA (A-10000 Series) A82-18840 - A82-22250 This bibliography was prepared by the NASA Scientific and Technical Information Facility operated for the National Aeronautics and Space Administration by PRC Government Information Systems. NASA SP-7011(232) AEROSPACE MEDICINE AND BIOLOGY A CONTINUING BIBLIOGRAPHY WITH INDEXES (Supplement 232) A selection of annotated references to unclassified reports and journal articles that were introduced into the NASA scientific and technical information sys- tem and announced in April 1982 in Scientific and Technical Aerospace Reports (STAR) International Aerospace Abstracts (IA A). Scientific and Technical Information Branch 1982 National Aeronautics and Space Administration Washington, DC NASA SP-7011 and its supplements are available from the National Technical Information Service (NTIS). Questions on the availability of the predecessor publications, Aerospace Medicine and Biology (Volumes I - XI) should be directed to NTIS. This supplement is available as NTISUB/123/093 from the National Technical Information Service (NTIS), Springfield, Virginia 22161 at the price of $7.00 domestic; $14.00 foreign. -
Effect of Glycosylation on Protein Folding: a Close Look at Thermodynamic Stabilization
Effect of glycosylation on protein folding: A close look at thermodynamic stabilization Dalit Shental-Bechor and Yaakov Levy* Department of Structural Biology, Weizmann Institute of Science, Rehovot 76100, Israel Edited by Jose´N. Onuchic, University of California at San Diego, La Jolla, CA, and approved May 1, 2008 (received for review February 10, 2008) Glycosylation is one of the most common posttranslational mod- ical functioning of proteins in the cell. Understanding the effects ifications to occur in protein biosynthesis, yet its effect on the of posttranslational modifications to the protein energy land- thermodynamics and kinetics of proteins is poorly understood. A scape is valuable in understanding protein function and how minimalist model based on the native protein topology, in which protein thermodynamics and kinetics can be modulated by the each amino acid and sugar ring was represented by a single bead, formation of a conjugate or through an external stimulus. In this was used to study the effect of glycosylation on protein folding. article, we explore the effects of glycosylation on the biophysical We studied in silico the folding of 63 engineered SH3 domain properties of proteins with the main goal of understanding variants that had been glycosylated with different numbers of folding mechanisms, thermodynamics, and kinetics in the conjugated polysaccharide chains at different sites on the protein’s context of the cell. surface. Thermal stabilization of the protein by the polysaccharide Glycosylation [i.e., the attachment of polysaccharide chains chains was observed in proportion to the number of attached (also termed ‘‘glycans’’) to proteins] is regarded as one of the chains.