Transcription Factor TEAD4 Specifies the Trophectoderm Lineage at the Beginning of Mammalian Development Rieko Yagi1,*, Matthew J
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Human Pluripotent Stem Cells As a Model of Trophoblast Differentiation in Both Normal Development and Disease
Human pluripotent stem cells as a model of trophoblast differentiation in both normal development and disease Mariko Horiia,b,1, Yingchun Lia,b,1, Anna K. Wakelanda,b,1, Donald P. Pizzoa, Katharine K. Nelsona,b, Karen Sabatinib,c, Louise Chang Laurentb,c, Ying Liud,e,f, and Mana M. Parasta,b,2 aDepartment of Pathology, University of California, San Diego, La Jolla, CA 92093; bSanford Consortium for Regenerative Medicine, University of California, San Diego, La Jolla, CA 92093; cDepartment of Reproductive Medicine, University of California, San Diego, La Jolla, CA 92093; dDepartment of Neurosurgery, Center for Stem Cell and Regenerative Medicine, University of Texas Health Sciences Center, Houston, TX 77030; eThe Senator Lloyd and B. A. Bentsen Center for Stroke Research, University of Texas Health Sciences Center, Houston, TX 77030; and fThe Brown Foundation Institute of Molecular Medicine for the Prevention of Human Diseases, University of Texas Health Sciences Center, Houston, TX 77030 Edited by R. Michael Roberts, University of Missouri–Columbia, Columbia, MO, and approved May 25, 2016 (received for review March 24, 2016) Trophoblast is the primary epithelial cell type in the placenta, a Elf5 (Ets domain transcription factor) and Eomes (Eomeso- transient organ required for proper fetal growth and develop- dermin), also have been shown to be required for maintenance of ment. Different trophoblast subtypes are responsible for gas/nutrient the TSC fate in the mouse (8, 9). exchange (syncytiotrophoblasts, STBs) and invasion and maternal Significantly less is known about TE specification and the TSC vascular remodeling (extravillous trophoblasts, EVTs). Studies of niche in the human embryo (10, 11). -
A Molecular Switch for Photoperiod Responsiveness in Mammals
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Current Biology 20, 2193–2198, December 21, 2010 ª2010 Elsevier Ltd All rights reserved DOI 10.1016/j.cub.2010.10.048 Report A Molecular Switch for Photoperiod Responsiveness in Mammals Hugues Dardente,1,* Cathy A. Wyse,1 Mike J. Birnie,1 type 2 thyroid hormone deiodinase (Dio2) expression in the Sandrine M. Dupre´,2 Andrew S.I. Loudon,2 hypothalamus [6]. This enzyme is a gatekeeper for the effects Gerald A. Lincoln,3 and David G. Hazlerigg1,* of thyroid hormone in the hypothalamus, controlling the avail- 1Institute of Biological and Environmental Sciences, Zoology ability of the active form of thyroid hormone, triiodothyronine, Building, Tillydrone Avenue, University of Aberdeen, and dictating the expression of summer phenotypes [7, 8]. Aberdeen AB24 2TZ, UK A unique feature of mammalian seasonal biology [2–5] is that 2Faculty of Life Sciences, University of Manchester, these effects of day length on PT function depend on the pineal Manchester M13 9PT, UK hormone melatonin, which acts via a high density of melatonin 3Queen’s Medical Research Institute, University of Edinburgh, receptors localized in the PT [ 9, 10]. Melatonin is a circadian Edinburgh EH16 4SB, UK signal, with a nocturnal waveform proportional to the length of the night, and consequently, in the PT, melatonin controls the rhythmical expression of multiple transcription factors Summary implicated in circadian function [11–15]. Hence, we hypothe- sized that photoperiodic effects on TSHb expression in the Seasonal synchronization based on day length (photope- PT are initiated through melatonin’s effects on circadian tran- riod) allows organisms to anticipate environmental change. -
Structural and Numerical Changes of Chromosome X in Patients with Esophageal Atresia
European Journal of Human Genetics (2014) 22, 1077–1084 & 2014 Macmillan Publishers Limited All rights reserved 1018-4813/14 www.nature.com/ejhg ARTICLE Structural and numerical changes of chromosome X in patients with esophageal atresia Erwin Brosens*,1,2,5, Elisabeth M de Jong1,2,5, Tahsin Stefan Barakat3, Bert H Eussen1, Barbara D’haene4, Elfride De Baere4, Hannah Verdin4, Pino J Poddighe1, Robert-Jan Galjaard1, Joost Gribnau3, Alice S Brooks1, Dick Tibboel2 and Annelies de Klein1 Esophageal atresia with or without tracheoesophageal fistula (EA/TEF) is a relatively common birth defect often associated with additional congenital anomalies such as vertebral, anal, cardiovascular, renal and limb defects, the so-called VACTERL association. Yet, little is known about the causal genetic factors. Rare case reports of gastrointestinal anomalies in children with triple X syndrome prompted us to survey the incidence of structural and numerical changes of chromosome X in patients with EA/TEF. All available (n ¼ 269) karyotypes of our large (321) EA/TEF patient cohort were evaluated for X-chromosome anomalies. If sufficient DNA material was available, we determined genome-wide copy number profiles with SNP array and identified subtelomeric aberrations on the difficult to profile PAR1 region using telomere-multiplex ligation-dependent probe amplification. In addition, we investigated X-chromosome inactivation (XCI) patterns and mode of inheritance of detected aberrations in selected patients. Three EA/TEF patients had an additional maternally inherited X chromosome. These three female patients had normal random XCI patterns. Two male EA/TEF patients had small inherited duplications of the XY-linked SHOX (Short stature HOmeoboX-containing) locus. -
Transcription Mediated Insulation and Interference Direct Gene Cluster
1 Transcription mediated insulation and interference direct gene 2 cluster expression switches 3 Tania Nguyen1, Harry Fischl1#, Françoise S. Howe1#, Ronja Woloszczuk1#, Ana Serra 4 Barros1*, Zhenyu Xu2*, David Brown1, Struan C. Murray1, Simon Haenni1, James M. 5 Halstead1, Leigh O’Connor1, Gergana Shipkovenska1, Lars M. Steinmetz2 and Jane Mellor1§ 6 1Department of Biochemistry, South Parks Road, Oxford, OX1 3QU, UK 7 2European Molecular Biology Laboratory (EMBL), Genome Biology Unit, 69117 Heidelberg, 8 Germany 9 10 . 11 # , * Equal contribution 12 § Corresponding author: [email protected] 13 14 Competing interests statement: JM is an advisor to Oxford Biodynamics Ltd and Sibelius Ltd and sits 15 on the board of Chronos Therapeutics Ltd. OBD supported this work but have no commercial 16 interest in the study design, data collection and interpretation, or the decision to submit the work 17 for publication. 1 18 Abstract 19 In yeast, many tandemly arranged genes show peak expression in different phases of the 20 metabolic cycle (YMC) or in different carbon sources, indicative of regulation by a bi- 21 modal switch, but it is not clear how these switches are controlled. Using native 22 elongating transcript analysis (NET-seq), we show that transcription itself is a component 23 of bi-modal switches, facilitating reciprocal expression in gene clusters. HMS2, encoding a 24 growth-regulated transcription factor, switches between sense- or antisense-dominant 25 states that also coordinate up- and down-regulation of transcription at neighbouring 26 genes. Engineering HMS2 reveals alternative mono-, di- or tri-cistronic and antisense 27 transcription units (TUs), using different promoter and terminator combinations, that 28 underlie state-switching. -
273.Full-Text.Pdf
Copyright 2001 by the Genetics Society of America The te¯on Gene Is Required for Maintenance of Autosomal Homolog Pairing at Meiosis I in Male Drosophila melanogaster John E. Tomkiel,* Barbara T. Wakimoto² and Albert Briscoe, Jr.* *Center for Molecular Medicine and Genetics, Wayne State University, Detroit, Michigan 48202 and ²Departments of Zoology and Genetics, University of Washington, Seattle, Washington 98195 Manuscript received July 10, 2000 Accepted for publication September 29, 2000 ABSTRACT In recombination-pro®cient organisms, chiasmata appear to mediate associations between homologs at metaphase of meiosis I. It is less clear how homolog associations are maintained in organisms that lack recombination, such as male Drosophila. In lieu of chiasmata and synaptonemal complexes, there must be molecules that balance poleward forces exerted across homologous centromeres. Here we describe the genetic and cytological characterization of four EMS-induced mutations in te¯on (tef), a gene involved in this process in Drosophila melanogaster. All four alleles are male speci®c and cause meiosis I-speci®c nondisjunction of the autosomes. They do not measurably perturb sex chromosome segregation, suggesting that there are differences in the genetic control of autosome and sex chromosome segregation in males. Meiotic transmission of univalent chromosomes is unaffected in tef mutants, implicating the tef product in a pairing-dependent process. The segregation of translocations between sex chromosomes and autosomes is altered in tef mutants in a manner that supports this hypothesis. Consistent with these genetic observations, cytological examination of meiotic chromosomes suggests a role of tef in regulating or mediating pairing of autosomal bivalents at meiosis I. -
NUMB and Syncytiotrophoblast Development and Function: Investigation Using Bewo Choriocarcinoma Cells by Julie Carey This Thesis
NUMB and Syncytiotrophoblast Development and Function: Investigation Using BeWo Choriocarcinoma Cells By Julie Carey This thesis is submitted as a partial fulfillment of the M.Sc. program in Cellular and Molecular Medicine Faculty of Medicine, University of Ottawa May, 2012 © Julie Carey, Ottawa, Canada, 2012 ABSTRACT The role of NUMB, a protein important for cellular differentiation and endocytosis in non-placental cells, was investigated in syncytiotrophoblast development and function in the human placenta. The BeWo choriocarcinoma cell line was used as a model for villous cytotrophoblast cells and syncytiotrophoblast to investigate NUMB’s involvement in differentiation and epidermal growth factor receptor (EGFR) endocytosis. NUMB isoforms 1 and 3 were found to be the predominant isoforms and were upregulated following forskolin-induced differentiation. Overexpression of NUMB isoforms 1 and 3 did not mediate differentiation or EGFR signaling. Immunofluorescence analysis revealed that NUMB colocalized with EGFR at perinuclear late endosomes and lysosomes following EGF stimulation. We have demonstrated for the first time that NUMB isoforms 1 and 3 are expressed in BeWo cells, are upregulated in forskolin- differentiated BeWo cells and are involved in ligand-dependent EGFR endocytosis in BeWo cells. ii TABLE OF CONTENTS ABSTRACT …………………………………………………………………………….. ii LIST OF TABLES ……………………………………………………………………... v LIST OF FIGURES ………………………………………………………………...…. vi LIST OF ABBREVIATIONS ………………………………………………...……… vii ACKNOWLEDGEMENTS ……………………………………………...…..………. -
A Detailed Genome-Wide Reconstruction of Mouse Metabolism Based on Human Recon 1
UC San Diego UC San Diego Previously Published Works Title A detailed genome-wide reconstruction of mouse metabolism based on human Recon 1 Permalink https://escholarship.org/uc/item/0ck1p05f Journal BMC Systems Biology, 4(1) ISSN 1752-0509 Authors Sigurdsson, Martin I Jamshidi, Neema Steingrimsson, Eirikur et al. Publication Date 2010-10-19 DOI http://dx.doi.org/10.1186/1752-0509-4-140 Supplemental Material https://escholarship.org/uc/item/0ck1p05f#supplemental Peer reviewed eScholarship.org Powered by the California Digital Library University of California Sigurdsson et al. BMC Systems Biology 2010, 4:140 http://www.biomedcentral.com/1752-0509/4/140 RESEARCH ARTICLE Open Access A detailed genome-wide reconstruction of mouse metabolism based on human Recon 1 Martin I Sigurdsson1,2,3, Neema Jamshidi4, Eirikur Steingrimsson1,3, Ines Thiele3,5*, Bernhard Ø Palsson3,4* Abstract Background: Well-curated and validated network reconstructions are extremely valuable tools in systems biology. Detailed metabolic reconstructions of mammals have recently emerged, including human reconstructions. They raise the question if the various successful applications of microbial reconstructions can be replicated in complex organisms. Results: We mapped the published, detailed reconstruction of human metabolism (Recon 1) to other mammals. By searching for genes homologous to Recon 1 genes within mammalian genomes, we were able to create draft metabolic reconstructions of five mammals, including the mouse. Each draft reconstruction was created in compartmentalized and non-compartmentalized version via two different approaches. Using gap-filling algorithms, we were able to produce all cellular components with three out of four versions of the mouse metabolic reconstruction. -
The Placenta: Transcriptional, Epigenetic, and Physiological Integration During Development
The placenta: transcriptional, epigenetic, and physiological integration during development Emin Maltepe, … , Anna I. Bakardjiev, Susan J. Fisher J Clin Invest. 2010;120(4):1016-1025. https://doi.org/10.1172/JCI41211. Review Series The placenta provides critical transport functions between the maternal and fetal circulations during intrauterine development. Formation of this interface relies on coordinated interactions among transcriptional, epigenetic, and environmental factors. Here we describe these mechanisms in the context of the differentiation of placental cells (trophoblasts) and synthesize current knowledge about how they interact to generate a functional placenta. Developing an understanding of these pathways contributes to an improvement of our models for studying trophoblast biology and sheds light on the etiology of pregnancy complications and the in utero programming of adult diseases. Find the latest version: https://jci.me/41211/pdf Review series The placenta: transcriptional, epigenetic, and physiological integration during development Emin Maltepe,1,2,3,4 Anna I. Bakardjiev,1,2,5 and Susan J. Fisher2,3,4,6,7 1Department of Pediatrics, 2Biomedical Sciences Program, 3Center for Reproductive Sciences and the Department of Obstetrics, Gynecology and Reproductive Sciences, 4Eli and Edythe Broad Center for Regeneration Medicine and Stem Cell Research, 5Program in Microbial Pathogenesis and Host Defense, 6Department of Anatomy, and 7Human Embryonic Stem Cell Program, University of California, San Francisco. The placenta provides critical transport functions between the maternal and fetal circulations during intrauterine development. Formation of this interface relies on coordinated interactions among transcriptional, epigenetic, and environmental factors. Here we describe these mechanisms in the context of the differentiation of placental cells (tro- phoblasts) and synthesize current knowledge about how they interact to generate a functional placenta. -
Mechanisms of Human Embryo Development: from Cell Fate to Tissue Shape and Back Marta N
© 2020. Published by The Company of Biologists Ltd | Development (2020) 147, dev190629. doi:10.1242/dev.190629 REVIEW Mechanisms of human embryo development: from cell fate to tissue shape and back Marta N. Shahbazi* ABSTRACT activated ion channels (Coste et al., 2010), mechanosensitive Gene regulatory networks and tissue morphogenetic events drive the transcription factors (Dupont et al., 2011) or directly by the nucleus emergence of shape and function: the pillars of embryo development. (Kirby and Lammerding, 2018). Once sensed, mechanical cues – Although model systems offer a window into the molecular biology of are transduced into biochemical signals a process known as cell fate and tissue shape, mechanistic studies of our own mechanotransduction (Chan et al., 2017). The conversion of development have so far been technically and ethically challenging. mechanical cues into biochemical signals leads to changes in However, recent technical developments provide the tools to gene expression and protein activity that control cell behaviour, cell describe, manipulate and mimic human embryos in a dish, thus fate specification and tissue patterning. opening a new avenue to exploring human development. Here, I Current consensus focuses on two main ideas to explain the discuss the evidence that supports a role for the crosstalk between emergence of tissue patterns in response to morphogen (see Glossary, ‘ ’ cell fate and tissue shape during early human embryogenesis. This is Box1)signals.Inthe positional information model (Wolpert, a critical developmental period, when the body plan is laid out and 1969), the concentration of a morphogen serves as a coordinate of the many pregnancies fail. Dissecting the basic mechanisms that position of a cell within a tissue. -
Revisedental.Com Implantation
Embryology Sumamry This lesson will cover fertilisation, implantation, gastrulation and neurulation. The first 4 weeks of embryology. Pregnancy is split into three trimesters. Semesters one and two contribute to the embryonic period and semester three becomes the fetal period. The first of these trimesters is a critical time period, because this is when all the main organ systems begin to develop. The second trimester is when we start to look more human and our organ systems are near complete ready to move into the third trimester, which shows rapid fetal growth and organ function. This process takes between 38-40 weeks, which is when birth occurs. Week 1: Key Words: Fertilisation Zygote Cleavage Blastomere Morula Blastocyst Trophoblast EmbryoblastsReviseDental.com Implantation Cell actions: Proliferate, Migrate and Differentiate. Fertilisation: The optimum time for fertilisation to occur is between 12-24hrs after ovulation (when the secondary oocyst leaves the ovary). However, due to the ability of sperm being able to remain viable for 48hrs, there is a 3 day window around the time of ovulation for fertilisation to take place. Sperm and ova are haploid cells. This means they have half the amount of chromosomes of a human cell. Therefore, on fusion (syngamy) a diploid cell is created, now known as a zygote. The Zygote now has the correct number of chromosomes: 46. Diagram schematicReviseDental.com of a sperm and ova The sperm cells are specially equipped to enter the ova, having acrosome enzymes to penetrate the cell wall and a powerful flagella (tail) for motility. On entrance, to prevent polyspermy (multiple sperm entering), the ova cell wall depolarises alongside deactivation of cell receptor, making the ova's zona pellucida impenetrable. -
Early Embryonic Development Till Gastrulation (Humans)
Gargi College Subject: Comparative Anatomy and Developmental Biology Class: Life Sciences 2 SEM Teacher: Dr Swati Bajaj Date: 17/3/2020 Time: 2:00 pm to 3:00 pm EARLY EMBRYONIC DEVELOPMENT TILL GASTRULATION (HUMANS) CLEAVAGE: Cleavage in mammalian eggs are among the slowest in the animal kingdom, taking place some 12-24 hours apart. The first cleavage occurs along the journey of the embryo from oviduct toward the uterus. Several features distinguish mammalian cleavage: 1. Rotational cleavage: the first cleavage is normal meridional division; however, in the second cleavage, one of the two blastomeres divides meridionally and the other divides equatorially. 2. Mammalian blastomeres do not all divide at the same time. Thus the embryo frequently contains odd numbers of cells. 3. The mammalian genome is activated during early cleavage and zygotically transcribed proteins are necessary for cleavage and development. (In humans, the zygotic genes are activated around 8 cell stage) 4. Compaction: Until the eight-cell stage, they form a loosely arranged clump. Following the third cleavage, cell adhesion proteins such as E-cadherin become expressed, and the blastomeres huddle together and form a compact ball of cells. Blatocyst: The descendents of the large group of external cells of Morula become trophoblast (trophoblast produce no embryonic structure but rather form tissues of chorion, extraembryonic membrane and portion of placenta) whereas the small group internal cells give rise to Inner Cell mass (ICM), (which will give rise to embryo proper). During the process of cavitation, the trophoblast cells secrete fluid into the Morula to create blastocoel. As the blastocoel expands, the inner cell mass become positioned on one side of the ring of trophoblast cells, resulting in the distinctive mammalian blastocyst. -
Antagonistic Role of E4BP4 and PAR Proteins in the Circadian Oscillatory Mechanism
Downloaded from genesdev.cshlp.org on September 26, 2021 - Published by Cold Spring Harbor Laboratory Press Antagonistic role of E4BP4 and PAR proteins in the circadian oscillatory mechanism Shigeru Mitsui,1,3 Shun Yamaguchi,1,3 Takuya Matsuo,1,2 Yoshiki Ishida,1 and Hitoshi Okamura1,4 1Department of Anatomy and Brain Science, Kobe University School of Medicine, Chuo-ku, Kobe 650-0017, Japan; 2Department of Physics, Informatics and Biology, Yamaguchi University, Yamaguchi 753-8512, Japan E4BP4, a basic leucine zipper transcription factor, contains a DNA-binding domain closely related to DBP, HLF, and TEF, which are PAR proteins. Here, we show that the phase of e4bp4 mRNA rhythm is opposite to that of the dbp, hlf, and tef rhythms in the suprachiasmatic nucleus (SCN), the mammalian circadian center, and the liver. The protein levels of E4BP4 and DBP also fluctuate in almost the opposite phase. Moreover, all PAR proteins activate, whereas E4BP4 suppresses, the transcriptional activity of the reporter gene containing a common binding sequence in transcriptional assays in vitro. An electrophoretic mobility shift assay demonstrated that E4BP4 is not able to dimerize with the PAR proteins, but is able to compete for the same binding sites with them. Furthermore, we showed sustained low e4bp4 and high dbp mRNA levels in mCry-deficient mice. These results indicate that the E4BP4 and PAR proteins are paired components of a reciprocating mechanism wherein E4BP4 suppresses the transcription of target genes during the time of day when E4BP4 is abundant, and the PAR proteins activate them at another time of day. E4BP4 and the PAR proteins may switch backand forth between the on-off conditions of the target genes.