Forming Fungi
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Supplementary Material for Nelson, P. R., B. Mccune & D. K. Swanson
Supplementary material for Nelson, P. R., B. McCune & D. K. Swanson. 2015. Lichen traits and species as indicators of vegetation and environment. The Bryologist 118(3): XX–XX. Supplementary Table S2. Trait matrix (alphabetical by species). “1” indicates a species possesses that trait. cladoniiform Filamentous Squamulose Cyano Erect Appressed 3D s branched Tripartite Fruticose Terricole Epiphyte Lignicole Saxicole p soredia lobules Foliose Simple foliose Green rawlin isida foliose Lichen Species Subspecies richly Only g Alectoria ochroleuca 1 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 Allantoparmelia almquistii 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 Allantoparmelia alpicola 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 Allocetraria madreporiformis 1 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 Anaptychia bryorum 1 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 Arctoparmelia centrifuga 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 Arctoparmelia incurva 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 1 0 0 Arctoparmelia separata 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 Arctoparmelia subcentrifuga 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 Asahinea chrysantha 1 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 Baeomyces carneus 1 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 Baeomyces placophyllus 1 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 Baeomyces rufus 1 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 Blennothallia crispa 0 1 0 0 1 0 0 1 0 0 0 0 0 0 1 0 1 0 Brodoa oroarctica 1 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 Bryocaulon divergens 1 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 Bryoria capillaris 1 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 Bryoria chalybeiformis 1 0 0 0 0 1 0 0 1 0 0 0 0 -
Phylogeny of the Cetrarioid Core (Parmeliaceae) Based on Five
The Lichenologist 41(5): 489–511 (2009) © 2009 British Lichen Society doi:10.1017/S0024282909990090 Printed in the United Kingdom Phylogeny of the cetrarioid core (Parmeliaceae) based on five genetic markers Arne THELL, Filip HÖGNABBA, John A. ELIX, Tassilo FEUERER, Ingvar KÄRNEFELT, Leena MYLLYS, Tiina RANDLANE, Andres SAAG, Soili STENROOS, Teuvo AHTI and Mark R. D. SEAWARD Abstract: Fourteen genera belong to a monophyletic core of cetrarioid lichens, Ahtiana, Allocetraria, Arctocetraria, Cetraria, Cetrariella, Cetreliopsis, Flavocetraria, Kaernefeltia, Masonhalea, Nephromopsis, Tuckermanella, Tuckermannopsis, Usnocetraria and Vulpicida. A total of 71 samples representing 65 species (of 90 worldwide) and all type species of the genera are included in phylogentic analyses based on a complete ITS matrix and incomplete sets of group I intron, -tubulin, GAPDH and mtSSU sequences. Eleven of the species included in the study are analysed phylogenetically for the first time, and of the 178 sequences, 67 are newly constructed. Two phylogenetic trees, one based solely on the complete ITS-matrix and a second based on total information, are similar, but not entirely identical. About half of the species are gathered in a strongly supported clade composed of the genera Allocetraria, Cetraria s. str., Cetrariella and Vulpicida. Arctocetraria, Cetreliopsis, Kaernefeltia and Tuckermanella are monophyletic genera, whereas Cetraria, Flavocetraria and Tuckermannopsis are polyphyletic. The taxonomy in current use is compared with the phylogenetic results, and future, probable or potential adjustments to the phylogeny are discussed. The single non-DNA character with a strong correlation to phylogeny based on DNA-sequences is conidial shape. The secondary chemistry of the poorly known species Cetraria annae is analyzed for the first time; the cortex contains usnic acid and atranorin, whereas isonephrosterinic, nephrosterinic, lichesterinic, protolichesterinic and squamatic acids occur in the medulla. -
Cryptic Species and Species Pairs in Lichens: a Discussion on the Relationship Between Molecular Phylogenies and Morphological Characters
cryptic species:07-Cryptic_species 10/12/2009 13:19 Página 71 Anales del Jardín Botánico de Madrid Vol. 66S1: 71-81, 2009 ISSN: 0211-1322 doi: 10.3989/ajbm.2225 Cryptic species and species pairs in lichens: A discussion on the relationship between molecular phylogenies and morphological characters by Ana Crespo & Sergio Pérez-Ortega Departamento de Biología Vegetal II, Facultad de Farmacia, Universidad Complutense de Madrid, E-28040 Madrid, Spain [email protected], [email protected] Abstract Resumen Crespo, A. & Pérez-Ortega, S. 2009. Cryptic species and species Crespo, A. & Pérez-Ortega, S. 2009. Especies crípticas y pares de pairs in lichens: A discussion on the relationship between mole- especies en líquenes: una discusión sobre la relación entre la fi- cular phylogenies and morphological characters. Anales Jard. logenia molecular y los caracteres morfológicos. Anales Jard. Bot. Madrid 66S1: 71-81. Bot. Madrid 66S1: 71-81 (en inglés). As with most disciplines in biology, molecular genetics has re- Como en otras disciplinas, el impacto producido por la filogenia volutionized our understanding of lichenized fungi. Nowhere molecular en el conocimiento de los hongos liquenizados ha has this been more true than in systematics, especially in the de- producido avances y cambios conceptuales importantes. Esto limitation of species. In many cases, molecular research has ve- ha sido especialmente cierto en la sistemática y ha afectado de rified long-standing hypotheses, but in others, results appear to una manera muy notable en aspectos -
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Sensitive Species # of Lichens Lichen, it’s a Lifestyle Lichens get their food from light, air and rain so they are easily damaged by pollutants in the 0 1-4 5-9 10-19 20-29 30-39 40+ Although lichens are diverse, lichens can be found in three major forms. air. Scientists study lichens to learn about air pollution. The healthier the air, the more species of lichen there will be. 1) On your hike, count how many different lichens you can find. Check the box next to each lichen form you find on your hike. 2) Based on your findings, would you consider the area to have good or bad air quality? Air Quality: Crustose Foliose Fruticose Crustose lichens are thin like crust. The lichen’s edges stay flat Foliose lichens look like dry, wavy foliage (leaves). The Fruticose lichens are the most three-dimensional against the object it is growing on. Crustose lichens grow slowly edges curl off the surface the lichen is growing on. lichens. Some look like mini fruit trees without and some are among the oldest living organisms on Earth! leaves while others hang down from branches like hair. Porpidia Porpidia cf. albocaerulescens Ramalina Punctelia Ramalina culbersoniorum Punctelia rudecta Many lichens don’t have a common name. What What would you would you name this lichen? James Lendemer name this lichen? _________________________ ______________ Andy Moroz Powdered Ruffle Lichen Script Lichen Parmotrema hypotropum Erin Tripp Andy Moroz Graphis scripta Look for little black Pixie Cup Lichen ‘hairs’ called cilia! Cladonia chlorophaea James Lendemer Kate Deregibus Kate Erin Tripp Old Man’s Beard Gold Dust Lichen Lungwort Lichen Usnea dasaea Chrysothryix xanthina Lobaria pulmonaria Lichens come in many shapes, sizes and.. -
A Preliminary Lichen Checklist of the Redstone Arsenal, Madison County, Alabama
Opuscula Philolichenum, 17: 351-361. 2018. *pdf effectively published online 12October2018 via (http://sweetgum.nybg.org/philolichenum/) A Preliminary Lichen Checklist of the Redstone Arsenal, Madison County, Alabama CURTIS J. HANSEN1 ABSTRACT. – Lichens were surveyed across nine ecologically sensitive areas of the U.S. Army’s Redstone Arsenal in Madison County, Alabama. From a total of 464 collections, 151 species in 64 genera were identified, including 12 state records and three new species currently being described. Prior to this study, only eight lichen species had been documented from the Redstone Arsenal and less than 40 were known from Madison County. Newly reported lichens for Alabama include Caloplaca pollinii, Clauzadea chondrodes, Enchylium coccophorum, Hypotrachyna dentella, Lepraria xanthonica, Phaeophyscia hirsuta, Phaeophyscia leana, Physciella chloantha, Physconia leucoleiptes, Physconia subpallida, Punctelia graminicola, and Usnea halei. Results from this study represent the first lichen survey of the Redstone Arsenal and will serve as a baseline for future studies. KEYWORDS. – Lichen biodiversity, North America, northern Alabama, southern Highland Rim, Tennessee Valley, United States. INTRODUCTION Lichens of northern Alabama are poorly studied and virtually no records have been published from Madison County. Though many papers documenting lichens from nearby regions exist, including the Great Smoky Mountains (Lendemer et al. 2013) and Southern Appalachian Mountains (Dey 1978), there are no published lichen reports from this area of northern Alabama. One state-wide checklist documented two lichen species from Madison County (Hansen 2003). A search of the Consortium of North American Lichen Herbaria (CNALH 2017) resulted in only 38 lichen specimens from Madison County, including eight from Redstone Arsenal (hereafter abbreviated RA). -
1307 Fungi Representing 1139 Infrageneric Taxa, 317 Genera and 66 Families ⇑ Jolanta Miadlikowska A, , Frank Kauff B,1, Filip Högnabba C, Jeffrey C
Molecular Phylogenetics and Evolution 79 (2014) 132–168 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families ⇑ Jolanta Miadlikowska a, , Frank Kauff b,1, Filip Högnabba c, Jeffrey C. Oliver d,2, Katalin Molnár a,3, Emily Fraker a,4, Ester Gaya a,5, Josef Hafellner e, Valérie Hofstetter a,6, Cécile Gueidan a,7, Mónica A.G. Otálora a,8, Brendan Hodkinson a,9, Martin Kukwa f, Robert Lücking g, Curtis Björk h, Harrie J.M. Sipman i, Ana Rosa Burgaz j, Arne Thell k, Alfredo Passo l, Leena Myllys c, Trevor Goward h, Samantha Fernández-Brime m, Geir Hestmark n, James Lendemer o, H. Thorsten Lumbsch g, Michaela Schmull p, Conrad L. Schoch q, Emmanuël Sérusiaux r, David R. Maddison s, A. Elizabeth Arnold t, François Lutzoni a,10, Soili Stenroos c,10 a Department of Biology, Duke University, Durham, NC 27708-0338, USA b FB Biologie, Molecular Phylogenetics, 13/276, TU Kaiserslautern, Postfach 3049, 67653 Kaiserslautern, Germany c Botanical Museum, Finnish Museum of Natural History, FI-00014 University of Helsinki, Finland d Department of Ecology and Evolutionary Biology, Yale University, 358 ESC, 21 Sachem Street, New Haven, CT 06511, USA e Institut für Botanik, Karl-Franzens-Universität, Holteigasse 6, A-8010 Graz, Austria f Department of Plant Taxonomy and Nature Conservation, University of Gdan´sk, ul. Wita Stwosza 59, 80-308 Gdan´sk, Poland g Science and Education, The Field Museum, 1400 S. -
Lichen Functional Trait Variation Along an East-West Climatic Gradient in Oregon and Among Habitats in Katmai National Park, Alaska
AN ABSTRACT OF THE THESIS OF Kaleigh Spickerman for the degree of Master of Science in Botany and Plant Pathology presented on June 11, 2015 Title: Lichen Functional Trait Variation Along an East-West Climatic Gradient in Oregon and Among Habitats in Katmai National Park, Alaska Abstract approved: ______________________________________________________ Bruce McCune Functional traits of vascular plants have been an important component of ecological studies for a number of years; however, in more recent times vascular plant ecologists have begun to formalize a set of key traits and universal system of trait measurement. Many recent studies hypothesize global generality of trait patterns, which would allow for comparison among ecosystems and biomes and provide a foundation for general rules and theories, the so-called “Holy Grail” of ecology. However, the majority of these studies focus on functional trait patterns of vascular plants, with a minority examining the patterns of cryptograms such as lichens. Lichens are an important component of many ecosystems due to their contributions to biodiversity and their key ecosystem services, such as contributions to mineral and hydrological cycles and ecosystem food webs. Lichens are also of special interest because of their reliance on atmospheric deposition for nutrients and water, which makes them particularly sensitive to air pollution. Therefore, they are often used as bioindicators of air pollution, climate change, and general ecosystem health. This thesis examines the functional trait patterns of lichens in two contrasting regions with fundamentally different kinds of data. To better understand the patterns of lichen functional traits, we examined reproductive, morphological, and chemical trait variation along precipitation and temperature gradients in Oregon. -
A New Species of Lecanora S. Lat., Growing on Lasallia Pustulata
The Lichenologist 40(2): 111–118 (2008) 2008 British Lichen Society doi:10.1017/S0024282908007469 Printed in the United Kingdom A new species of Lecanora s. lat., growing on Lasallia pustulata Sergio PEuREZ-ORTEGA and Javier ETAYO Abstract: The new species Lecanora lasalliae Pe´rez-Ortega & Etayo is described from Spain. It is included provisionally in Lecanora s. lat as characters such as Lecanora-type ascus, exciple composed of thick radiating hyphae and the usual presence of algal cells in the excipulum or its lichenicolous habitus on Lasallia pustulata, do not fit well within any known genus of lichenicolous or lichenized fungi. Its taxonomic affinities with several taxa are discussed, including the parasitic Lecanora gyrophorina. Key words: Carbonea, Lecidea, lichenicolous fungi, Nesolechia, Phacopsis, Protoparmelia, Ramboldia, Scoliciosporum, Spain Introduction and compare it to other genera with licheni- The umbilicate genus Lasallia Me´rat does colous species with Lecanora-type ascus with not host many species of fungi; so we were which the species could be related or surprised to find several healthy thalli of confused. Lasallia pustulata (L.) Me´rat. with small patches of apothecia growing on the thallus Material and Methods margins, mainly mixed with clusters of isidia. Because of the frequent presence of The material was examined using standard micro- scopical techniques. Photographs were taken with a dispersed algae in the exciple, thick excipu- Leica Mz75 stereomicroscope and a Zeiss Axioskop2 lar hyphae, the nature of the pigments in Plus microscope equipped with differential contrast. paraphyses and excipulum, and the Amyloid reactions were tested with Lugol’s reagent, Lecanora-type ascus, we hesitated to include either without or with a pre-treatment with KOH (I and K/I respectively). -
H. Thorsten Lumbsch VP, Science & Education the Field Museum 1400
H. Thorsten Lumbsch VP, Science & Education The Field Museum 1400 S. Lake Shore Drive Chicago, Illinois 60605 USA Tel: 1-312-665-7881 E-mail: [email protected] Research interests Evolution and Systematics of Fungi Biogeography and Diversification Rates of Fungi Species delimitation Diversity of lichen-forming fungi Professional Experience Since 2017 Vice President, Science & Education, The Field Museum, Chicago. USA 2014-2017 Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. Since 2014 Curator, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2013-2014 Associate Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2009-2013 Chair, Dept. of Botany, The Field Museum, Chicago, USA. Since 2011 MacArthur Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2006-2014 Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2005-2009 Head of Cryptogams, Dept. of Botany, The Field Museum, Chicago, USA. Since 2004 Member, Committee on Evolutionary Biology, University of Chicago. Courses: BIOS 430 Evolution (UIC), BIOS 23410 Complex Interactions: Coevolution, Parasites, Mutualists, and Cheaters (U of C) Reading group: Phylogenetic methods. 2003-2006 Assistant Curator, Dept. of Botany, The Field Museum, Chicago, USA. 1998-2003 Privatdozent (Assistant Professor), Botanical Institute, University – GHS - Essen. Lectures: General Botany, Evolution of lower plants, Photosynthesis, Courses: Cryptogams, Biology -
Lichens and Associated Fungi from Glacier Bay National Park, Alaska
The Lichenologist (2020), 52,61–181 doi:10.1017/S0024282920000079 Standard Paper Lichens and associated fungi from Glacier Bay National Park, Alaska Toby Spribille1,2,3 , Alan M. Fryday4 , Sergio Pérez-Ortega5 , Måns Svensson6, Tor Tønsberg7, Stefan Ekman6 , Håkon Holien8,9, Philipp Resl10 , Kevin Schneider11, Edith Stabentheiner2, Holger Thüs12,13 , Jan Vondrák14,15 and Lewis Sharman16 1Department of Biological Sciences, CW405, University of Alberta, Edmonton, Alberta T6G 2R3, Canada; 2Department of Plant Sciences, Institute of Biology, University of Graz, NAWI Graz, Holteigasse 6, 8010 Graz, Austria; 3Division of Biological Sciences, University of Montana, 32 Campus Drive, Missoula, Montana 59812, USA; 4Herbarium, Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824, USA; 5Real Jardín Botánico (CSIC), Departamento de Micología, Calle Claudio Moyano 1, E-28014 Madrid, Spain; 6Museum of Evolution, Uppsala University, Norbyvägen 16, SE-75236 Uppsala, Sweden; 7Department of Natural History, University Museum of Bergen Allégt. 41, P.O. Box 7800, N-5020 Bergen, Norway; 8Faculty of Bioscience and Aquaculture, Nord University, Box 2501, NO-7729 Steinkjer, Norway; 9NTNU University Museum, Norwegian University of Science and Technology, NO-7491 Trondheim, Norway; 10Faculty of Biology, Department I, Systematic Botany and Mycology, University of Munich (LMU), Menzinger Straße 67, 80638 München, Germany; 11Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK; 12Botany Department, State Museum of Natural History Stuttgart, Rosenstein 1, 70191 Stuttgart, Germany; 13Natural History Museum, Cromwell Road, London SW7 5BD, UK; 14Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43 Průhonice, Czech Republic; 15Department of Botany, Faculty of Science, University of South Bohemia, Branišovská 1760, CZ-370 05 České Budějovice, Czech Republic and 16Glacier Bay National Park & Preserve, P.O. -
Checklist of Lichens and Lichenicolous Fungi in Germany Version #2: 19 January 2011
Checklist of lichens and lichenicolous fungi in Germany Version #2: 19 January 2011 Volkmar Wirth, Markus Hauck, Wolfgang von Brackel, Rainer Cezanne, Uwe de Bruyn, Oliver Dürhammer, Marion Eichler, Andreas Gnüchtel, Birgit Litterski, Volker Otte, Ulf Schiefelbein, Peter Scholz, Matthias Schultz, Regine Stordeur, Tassilo Feuerer, Dieter Heinrich, Volker John Lichenicolous fungi (including parasitic fungi on algae, which are marked with an asterisk) Abrothallus acetabuli Diederich Abrothallus bertianus De Not. Abrothallus buellianus Diederich Abrothallus caerulescens C. Kotte Abrothallus cetrariae C. Kotte Abrothallus microspermus Tul. Abrothallus parmeliarum (Sommerf.) Arnold Abrothallus peyritschii (Stein) C. Kotte Abrothallus prodiens (Harm.) Diederich & Hafellner Abrothallus usneae Rabenh. Abrothallus welwitschii Mont. ex Tul. Acaroconium punctiforme Kocourk. & D. Hawksw. Acremonium antarcticum (Speg.) D. Hawksw. Acremonium hypholomatis (Boedijn) D. Hawksw. Acremonium lichenicola W. Gams Acremonium rhabdosporum W. Gams (von Brackel 2010a) Adelococcus alpestris (Zopf) Theiss & P. Syd. Adelococcus interlatens (Arnold) Matzer & Hafellner Arborillus llimonae Munt.-Cvetk. & Gómez-Bolea Arthonia almquistii Vain. Arthonia apotheciorum (A. Massal.) Almq. Arthonia coniocraeae Brackel (von Brackel 2010a) Arthonia destruens Rehm Arthonia digitatae Hafellner Arthonia epiphyscia Nyl. Arthonia ericetorum Rehm Arthonia farinacea (H. Olivier) R. Sant. Arthonia fuscopurpurea (Tul.) R. Sant. Arthonia galactinaria Leight. Arthonia intexta Almq. Arthonia -
A Multigene Phylogenetic Synthesis for the Class Lecanoromycetes (Ascomycota): 1307 Fungi Representing 1139 Infrageneric Taxa, 317 Genera and 66 Families
A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families Miadlikowska, J., Kauff, F., Högnabba, F., Oliver, J. C., Molnár, K., Fraker, E., ... & Stenroos, S. (2014). A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families. Molecular Phylogenetics and Evolution, 79, 132-168. doi:10.1016/j.ympev.2014.04.003 10.1016/j.ympev.2014.04.003 Elsevier Version of Record http://cdss.library.oregonstate.edu/sa-termsofuse Molecular Phylogenetics and Evolution 79 (2014) 132–168 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families ⇑ Jolanta Miadlikowska a, , Frank Kauff b,1, Filip Högnabba c, Jeffrey C. Oliver d,2, Katalin Molnár a,3, Emily Fraker a,4, Ester Gaya a,5, Josef Hafellner e, Valérie Hofstetter a,6, Cécile Gueidan a,7, Mónica A.G. Otálora a,8, Brendan Hodkinson a,9, Martin Kukwa f, Robert Lücking g, Curtis Björk h, Harrie J.M. Sipman i, Ana Rosa Burgaz j, Arne Thell k, Alfredo Passo l, Leena Myllys c, Trevor Goward h, Samantha Fernández-Brime m, Geir Hestmark n, James Lendemer o, H. Thorsten Lumbsch g, Michaela Schmull p, Conrad L. Schoch q, Emmanuël Sérusiaux r, David R. Maddison s, A. Elizabeth Arnold t, François Lutzoni a,10,