Intermolecular Radical Carboamination of Alkenes
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NBO Applications, 2020
NBO Bibliography 2020 2531 publications – Revised and compiled by Ariel Andrea on Aug. 9, 2021 Aarabi, M.; Gholami, S.; Grabowski, S. J. S-H ... O and O-H ... O Hydrogen Bonds-Comparison of Dimers of Thiocarboxylic and Carboxylic Acids Chemphyschem, (21): 1653-1664 2020. 10.1002/cphc.202000131 Aarthi, K. V.; Rajagopal, H.; Muthu, S.; Jayanthi, V.; Girija, R. Quantum chemical calculations, spectroscopic investigation and molecular docking analysis of 4-chloro- N-methylpyridine-2-carboxamide Journal of Molecular Structure, (1210) 2020. 10.1016/j.molstruc.2020.128053 Abad, N.; Lgaz, H.; Atioglu, Z.; Akkurt, M.; Mague, J. T.; Ali, I. H.; Chung, I. M.; Salghi, R.; Essassi, E.; Ramli, Y. Synthesis, crystal structure, hirshfeld surface analysis, DFT computations and molecular dynamics study of 2-(benzyloxy)-3-phenylquinoxaline Journal of Molecular Structure, (1221) 2020. 10.1016/j.molstruc.2020.128727 Abbenseth, J.; Wtjen, F.; Finger, M.; Schneider, S. The Metaphosphite (PO2-) Anion as a Ligand Angewandte Chemie-International Edition, (59): 23574-23578 2020. 10.1002/anie.202011750 Abbenseth, J.; Goicoechea, J. M. Recent developments in the chemistry of non-trigonal pnictogen pincer compounds: from bonding to catalysis Chemical Science, (11): 9728-9740 2020. 10.1039/d0sc03819a Abbenseth, J.; Schneider, S. A Terminal Chlorophosphinidene Complex Zeitschrift Fur Anorganische Und Allgemeine Chemie, (646): 565-569 2020. 10.1002/zaac.202000010 Abbiche, K.; Acharjee, N.; Salah, M.; Hilali, M.; Laknifli, A.; Komiha, N.; Marakchi, K. Unveiling the mechanism and selectivity of 3+2 cycloaddition reactions of benzonitrile oxide to ethyl trans-cinnamate, ethyl crotonate and trans-2-penten-1-ol through DFT analysis Journal of Molecular Modeling, (26) 2020. -
Structural Chemistry and Molecular Biology Edited by A. Rich and N
1218 BOOK REVIEWS original references when specific numbers or critical inter- The theme of the chemistry of proteins section is the pretations are required. However, on balance the book attempt to predict the conformation of a protein molecule should be a valuable adjunct to the library of anyone con- from its amino-acid sequence. The apparent ease with which, templating work in the field of nonmetallic magnetic solids in nature, the molecule finds its way from disorder to order and I would recommend its purchase subject to the quali- makes Edsall optimistic that we can learn how it is done. fications noted above. In the same section Hamilton and McConnell review the W. L. ROTI-I use of spin labels to investigate conformational detail. Inorganic and Structures Branch A group of papers on inherited diseases which are as- Physical Chemistry Laboratory sociated with defective proteins is appropriate: Pauling was General Electric Company the first to recognize that human sickle-cell anaemia must P.O. Box 1088 reflect a difference in haemoglobin molecules. Among many Schenectady similar variants of haemoglobin and other proteins disco- New York 12301 vered since, not all are disadvantageous to the organism; U.S.A. some offer useful variety in activity or in the rate of their synthesis. The papers on hydrogen bonding are sufficiently closely related to show some 'resonance' between them. Donohue effectively criticizes four common assumptions: (1) that H- Structural chemistry and molecular biology. Edited bond geometry around the acceptor atom correlates well by ALEXANDER RICH and NORMAN DAVIDSON. Pp. with the arrangement of orbitals occupied by unshared elec- iv + 907. -
The Reactivity of Fluorinated Radicals in Liquid Phase
THE REACnVITY OF FLUORINATED RADICALS IN LIQUID PHASE By XIAOXINRONG A DISSERTATION PRESENTED TO THE GRADUATE SCHOOL OF THE UNIVERSITY OF FLORIDA IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY UNIVERSITY OF FLORIDA . TO MOM, DAD AND XIAO JUN ACKNOWLEDGMENTS I wish to express my gratitude for the excellent guidance and friendship of my research advisor. Dr. William R. Dolbier, Jr. It is he who has made the fulfillment of this dream come true. His enthusiasm for chemistry and his understanding nature have been an inspiration to me throughout the course of my graduate studies. With Professor Dolbier, the chemistry is always surmountable and one comes away with a positive feeling towards oneself and the tasks ahead, which has led to an enjoyable and rewarding experience. I would like to give my special thanks to my committee members, especially. Dr. David H. Powell for giving me a chance to work in the mass-spectrum lab. in the early years of my graduate studies, which made me learn mass spectrometry systematically. Such knowledge has given me a lot of benefits in my research work. It is a pleasure to thank the many friends and colleagues I have met and worked with at the University of Florida. Due to my extended stay in the Dolbier group, thanks are required to a number of lab-mates; Conrad Burkholder for stimulating discussions, Michael Bartberger for his help in lab-management, Michelle Fletcher for her help in English to write this dissertation, Lu Lian, Rogelio Ocampo, Melvin Wagner, Luz Amalia, and more recently Xu Yuelian, Hao Jian, all for providing valuable friendships. -
Intramolecular Bridges
Electronic Supplementary Material (ESI) for Analytical Methods. This journal is © The Royal Society of Chemistry 2017 Supplementary material Figure S1 The IMS-MS instrument A small sample of experiments, in chronological order, that calculated K0 with respect to the given chemical standard 2,4-lutidine (107 Da) Lubman DM, Kronick MN (1983) Multiwavelength-selective ionization of organic-compounds in an ion mobility spectrometer. Anal Chem 55(6):867–873 Lubman DM (1984) Temperature-dependence of plasma chromatography of aromatic-hydrocarbons. Anal Chem 56(8):1298–1302 Karpas Z (1989) Ion mobility spectrometry of aliphatic and aromatic-amines. Anal Chem 61(7):684–689 Karpas, Z. (1989). Evidence of proton-induced cyclization of α, ω-diamines from ion mobility measurements. International journal of mass spectrometry and ion processes, 93(2), 237-242. Karpas, Z., Berant, Z., & Stimac, R. M. (1990). An ion mobility spectrometry/mass spectrometry (IMS/MS) study of the site of protonation in anilines. Structural Chemistry, 1(2), 201-204. Morrissey, M. A., & Widmer, H. M. (1991). Ion-mobility spectrometry as a detection method for packed-column supercritical fluid chromatography. Journal of Chromatography A, 552, 551-561. Bell, S. E., Ewing, R. G., Eiceman, G. A., & Karpas, Z. (1994). Atmospheric pressure chemical ionization of alkanes, alkenes, and cycloalkanes. Journal of the American Society for Mass Spectrometry, 5(3), 177-185. Snyder AP, Maswadeh WM, Eiceman GA, Wang YF, Bell SE (1995) Multivariate statistical-analysis characterization of application-based ion mobility spectra. Anal Chim Acta 316 (1):1–14 Wessel, M. D., Sutter, J. M., & Jurs, P. C. (1996). Prediction of reduced ion mobility constants of organic compounds from molecular structure. -
Effects of Metal Ions in Free Radical Reactions Richard Duane Kriens Iowa State University
Iowa State University Capstones, Theses and Retrospective Theses and Dissertations Dissertations 1963 Effects of metal ions in free radical reactions Richard Duane Kriens Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/rtd Part of the Organic Chemistry Commons Recommended Citation Kriens, Richard Duane, "Effects of metal ions in free radical reactions " (1963). Retrospective Theses and Dissertations. 2544. https://lib.dr.iastate.edu/rtd/2544 This Dissertation is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Retrospective Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. This dissertation has been 64—3880 microfilmed exactly as received KRIENS, Richard Duane, 1932- EFFECTS OF METAL IONS IN FREE RADICAL REACTIONS. Iowa State University of Science and Technology Ph.D„ 1963 Chemistry, organic University Microfilms, Inc., Ann Arbor, Michigan EFFECTS OF METAL IONS IN FREE RADICAL REACTIONS by Richard Duane Kriens A Dissertation Submitted to the Graduate Faculty in Partial Fulfillment of The Requirements for the Degree of DOCTOR OF PHILOSOPHY Major Subject: Organic Chemistry Approved: Signature was redacted for privacy. In Charge of Major Work Signature was redacted for privacy. ead of Major Departmei^ Signature was redacted for privacy. Iowa State University Of Science and Technology Ames, Iowa 1963 11 TABLE OF CONTENTS Page PART I. REACTIONS OF RADICALS WITH METAL SALTS. ... 1 INTRODUCTION 2 REVIEW OF LITERATURE 3 RESULTS AND DISCUSSION 17 EXPERIMENTAL 54 Chemicals 54 Apparatus and Procedure 66 Reactions of compounds with the 2-cyano-2-propyl radical 66 Reactions of compounds with the phenyl radical 67 Procedure for Sandmeyer type reaction. -
Structural Inorganic Chemistry
Structural Inorganic Chemistry A. F. WELLS FIFTH EDITION \ CLARENDON PRESS • OXFORD Contents ABBREVIATIONS xxix PARTI 1. INTRODUCTION 3 The importance of the solid State 3 Structural formulae of inorganic Compounds 11 Geometrical and topological limitations on the structures of v molecules and crystals 20 The complete structural chemistry of an element or Compound 23 Structure in the solid State 24 Structural changes on melting 24 Structural changes in the liquid State 25 Structural changes on boiling or Sublimation 26 A Classification of crystals 27 Crystals consisting of infinite 3-dimensional complexes 29 Layer structures 30 Chain structures 33 Crystals containing finite complexes 36 Relations between crystal structures 36 2. SYMMETRY 38 Symmetry elements 38 Repeating patterns, unit cells, and lattices 38 One- and two-dimensional lattices; point groups 39 Three-dimensional lattices; space groups 42 Point groups; crystal Systems 47 Equivalent positions in space groups 50 Examples of 'anomalous' symmetry 5 1 Isomerism 52 Structural (topological) isomerism 54 Geometrical isomerism 56 Optical activity 57 3. POLYHEDRA AND NETS 63 Introduction 63 The basic Systems of connected points 65 viii Contents Polyhedra 68 Coordination polyhedra: polyhedral d'omains 68 The regulär solids 69 Semi-regular polyhedra 71 Polyhedra related to the pentagonal dodecahedron and icosahedron 72 Some less-regular polyhedra 74 5-coordination 76 7-coordination 77 8-coordination 78 9-coordination 79 10-and 11-coordination 80 Plane nets 81 Derivation of plane nets -
The Two Faces of the Guanyl Radical: Molecular Context and Behavior
molecules Review The Two Faces of the Guanyl Radical: Molecular Context and Behavior Chryssostomos Chatgilialoglu 1,2 1 ISOF, Consiglio Nazionale delle Ricerche, 40129 Bologna, Italy; [email protected]; Tel.: +39-051-6398309 2 Center of Advanced Technologies, Adam Mickiewicz University, 61-712 Pozna´n,Poland Abstract: The guanyl radical or neutral guanine radical G(-H)• results from the loss of a hydrogen atom (H•) or an electron/proton (e–/H+) couple from the guanine structures (G). The guanyl radical exists in two tautomeric forms. As the modes of formation of the two tautomers, their relationship and reactivity at the nucleoside level are subjects of intense research and are discussed in a holistic manner, including time-resolved spectroscopies, product studies, and relevant theoretical calculations. Particular attention is given to the one-electron oxidation of the GC pair and the complex mechanism of the deprotonation vs. hydration step of GC•+ pair. The role of the two G(-H)• tautomers in single- and double-stranded oligonucleotides and the G-quadruplex, the supramolecular arrangement that attracts interest for its biological consequences, are considered. The importance of biomarkers of guanine DNA damage is also addressed. Keywords: guanine; guanyl radical; tautomerism; guanine radical cation; oligonucleotides; DNA; G-quadruplex; time-resolved spectroscopies; reactive oxygen species (ROS); oxidation 1. The Guanine Sink Citation: Chatgilialoglu, C. The Two The free radical chemistry associated with guanine (Gua) and its derivatives, guano- Faces of the Guanyl Radical: sine (Guo), 2’-deoxyguanosine (dGuo), guanosine-50-monophosphate (GMP), and 20- Molecular Context and Behavior. deoxyguanosine-50-monophosphate (dGMP), is of particular interest due to its biological Molecules 2021, 26, 3511. -
Radical Hydroacylation of C-C and N-N Double Bonds in Air
University College London Radical Hydroacylation of C-C and N-N Double Bonds in Air by Jenna Marie Ahern Submitted in partial fulfilment of the requirements for the degree of Doctor of Philosophy Declaration I, Jenna Marie Ahern, confirm that the work presented in this thesis is my own. Where information has been derived from other sources, I confirm that this has been indicated in the thesis. Jenna Marie Ahern October 2010 Radical Hydroacylation of C-C and N-N Double Bonds in Air Jenna Marie Ahern Abstract The formation of C-C and C-N bonds in modern organic synthesis is a key target for methodological advancement. Current methods of C-C and C-N bond formation often involve the use of expensive catalysts, or sub-stoichiometric reagents, which can lead to the generation of undesirable waste products. This thesis describes a novel and environmentally benign set of reaction conditions for the formation of C-C and C-N bonds by hydroacylation and this is promoted by mixing two reagents, an aldehyde and an electron-deficient double bond, under freely available atmospheric oxygen at room temperature Chapter 1 will provide an introduction to the thesis and mainly discusses methods for C-C bond formation, in particular, radical chemistry and hydroacylation. Chapter 2 describes the hydroacylation of vinyl sulfonates and vinyl sulfones (C-C double bonds) with aliphatic and aromatic aldehydes with a discussion and evidence for the mechanism of the transformation. Chapter 3 details the synthesis of precursors for intramolecular cyclisations and studies into aerobic intramolecular cyclisations. Chapter 4 describes the hydroacylation of vinyl phosphonates (C-C double bonds) and diazocarboxylates (N-N double bonds) with aliphatic and aromatic aldehydes bearing functional groups. -
Conjugated, Carbon-Centered Radicals
molecules Review Synthesis, Physical Properties, and Reactivity of Stable, π-Conjugated, Carbon-Centered Radicals Takashi Kubo Department of Chemistry, Graduate School of Science, Osaka University, Toyonaka, Osaka 560-0043, Japan; [email protected] Received: 26 January 2019; Accepted: 11 February 2019; Published: 13 February 2019 Abstract: Recently, long-lived, organic radical species have attracted much attention from chemists and material scientists because of their unique electronic properties derived from their magnetic spin and singly occupied molecular orbitals. Most stable and persistent organic radicals are heteroatom-centered radicals, whereas carbon-centered radicals are generally very reactive and therefore have had limited applications. Because the physical properties of carbon-centered radicals depend predominantly on the topology of the π-electron array, the development of new carbon-centered radicals is key to new basic molecular skeletons that promise novel and diverse applications of spin materials. This account summarizes our recent studies on the development of novel carbon-centered radicals, including phenalenyl, fluorenyl, and triarylmethyl radicals. Keywords: π-conjugated radicals; hydrocarbon radicals; persistent; anthryl; phenalenyl; fluorenyl 1. Introduction Organic radical species are generally recognized as highly reactive, intermediate species. However, recently, functional materials taking advantage of the feature of open-shell electronic structure have attracted much attention from chemists and material scientists; therefore, the development of novel, long-lived, organic, radical species becomes more important [1–7]. Nitronyl nitroxides, galvinoxyl, and DPPH are well known as stable, organic, radical species, which are commercially available chemicals. These stable radical species are “heteroatom-centered radicals”, in which unpaired electrons are mainly distributed on heteroatoms. -
New Blatter-Type Radicals from a Bench-Stable Carbene
ARTICLE Received 6 Aug 2016 | Accepted 28 Feb 2017 | Published 15 May 2017 DOI: 10.1038/ncomms15088 OPEN New Blatter-type radicals from a bench-stable carbene Jacob A. Grant1, Zhou Lu2, David E. Tucker1, Bryony M. Hockin1, Dmitry S. Yufit1, Mark A. Fox1, Ritu Kataky1, Victor Chechik2 & AnnMarie C. O’Donoghue1 Stable benzotriazinyl radicals (Blatter’s radicals) recently attracted considerable interest as building blocks for functional materials. The existing strategies to derivatize Blatter’s radicals are limited, however, and synthetic routes are complex. Here, we report that an inexpensive, commercially available, analytical reagent Nitron undergoes a previously unrecognized transformation in wet acetonitrile in the presence of air to yield a new Blatter-type radical with an amide group replacing a phenyl at the C(3)-position. This one-pot reaction of Nitron provides access to a range of previously inaccessible triazinyl radicals with excellent benchtop stabilities. Mechanistic investigation suggests that the reaction starts with a hydrolytic cleavage of the triazole ring followed by oxidative cyclization. Several derivatives of Nitron were prepared and converted into Blatter-type radicals to test the synthetic value of the new reaction. These results significantly expand the scope of using functionalized benzotriazinyls as stable radical building blocks. 1 Department of Chemistry, Durham University, South Road, Durham DH1 3LE, UK. 2 Department of Chemistry, University of York, Heslington, York YO10 5DD, UK. Correspondence and requests for materials should be addressed to V.C. (email: [email protected]) or to A.M.C.O’D. (email: [email protected]). NATURE COMMUNICATIONS | 8:15088 | DOI: 10.1038/ncomms15088 | www.nature.com/naturecommunications 1 ARTICLE NATURE COMMUNICATIONS | DOI: 10.1038/ncomms15088 1 latter’s radical 1 (Fig. -
"Radical Stability --- Thermochemical Aspects" In
Radical Stability—Thermochemical Aspects Johnny Hioe and Hendrik Zipse Department of Chemistry, LMU M¨unchen, M¨unchen, Germany 1 INTRODUCTION is quite challenging. Kinetic data, in contrast, are much more difficult to predict by theory, while the The terms “transient” and “persistent” are used determination of reaction rates can be approached frequently in the scientific literature to describe experimentally with a variety of direct or indirect the kinetic properties of open shell systems in methods, at least for sufficiently fast reactions homogeneous solution.1–5 The hydroxyl radical (see Radical Kinetics and Clocks). Theory and (HO•, 1), for example, is a transient species of experiment pair up nicely in this respect, as a central importance in atmospheric chemistry (see combination of these approaches is able to provide Atmospheric Radical Chemistry), as well as one a comprehensive picture of thermodynamic and of the most important reactive oxygen species kinetic data. (ROS) in aqueous solution, whereas the nitroxide 2,2,6,6-tetramethylpiperidine-1-oxyl, TEMPO (2)is a persistent radical stable enough to be bottled and 2 DEFINITIONS OF RADICAL STABILITY sold in bulk (Figure 1) (see Nitroxides in Synthetic Radical Chemistry). The thermodynamic stability of C-centered radicals However, despite their widespread use, these can be defined in various ways and several options terms are not too helpful for a quantitative approach are discussed in the following.6–10 One of the to radical chemistry as they do not reflect the most often used definitions is based on hydrogen influence of thermochemical driving force and transfer reactions as shown in Scheme 1 for reaction • intrinsic reaction barrier on the observed lifetime. -
Characterization of the Vinyloxy Radical by Ns Time
PCCP View Article Online PAPER View Journal | View Issue Fragmentation of a dioxolanyl radical via nonstatistical reaction dynamics: characterization Cite this: Phys. Chem. Chem. Phys., 2018, 20,19819 of the vinyloxy radical by ns time-resolved laser flash photolysis† a b b b Go¨tz Bucher, ‡* Mukul Lal, Anup Rana and Michael Schmittel * The photochemistry of two Barton esters, one derived from a dioxolane carboxylic acid and the other from pivalic acid, was investigated by product analysis and nanosecond laser flash photolysis (LFP). As expected, photolysis of the pivalate ester resulted in formation of the pyridine-2-thiyl and the t-butyl radical. Photolysis of the Barton ester of 2,2-dimethyl-1,3-dioxolane-4-carboxylic acid, on the other hand, revealed a complex multi-step fragmentation. In addition to the pyridine-2-thiyl and dioxolanyl radical, we gained evidence for the formation of the vinyloxy radical, CH2QCHO . The latter was identified in the Creative Commons Attribution 3.0 Unported Licence. LFP by its p-complexes with benzene and diphenylether, its rapid quenching by electron-rich arenes and tri-n-butyl tin hydride, and its oxidative power in presence of trifluoroacetic acid as demonstrated by the oxidation of ferrocene to ferrocenium. Formation of CH2QCHO can be rationalized via Received 24th May 2018, fragmentation of the dioxolanyl radical. As the calculated barriers are too high for the reaction sequence Accepted 14th July 2018 to occur on the LFP time scale, we investigated the fragmentation of the photoexcited Barton ester via DOI: 10.1039/c8cp03311k Born–Oppenheimer molecular dynamics simulations. In one trajectory, we could observe all reaction steps including ring opening of the dioxolanyl radical, suggesting that the excess energy gained in the ester rsc.li/pccp cleavage and decarboxylation may lead to fragmentation of the hot dioxolanyl radical.