Functionalised Oximes: Emergent Precursors for Carbon-, Nitrogen- and Oxygen-Centred Radicals
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Nitroso and Nitro Compounds 11/22/2014 Part 1
Hai Dao Baran Group Meeting Nitroso and Nitro Compounds 11/22/2014 Part 1. Introduction Nitro Compounds O D(Kcal/mol) d (Å) NO NO+ Ph NO Ph N cellular signaling 2 N O N O OH CH3−NO 40 1.48 molecule in mammals a nitro compound a nitronic acid nitric oxide b.p = 100 oC (8 mm) o CH3−NO2 57 1.47 nitrosonium m.p = 84 C ion (pKa = 2−6) CH3−NH2 79 1.47 IR: υ(N=O): 1621-1539 cm-1 CH3−I 56 Nitro group is an EWG (both −I and −M) Reaction Modes Nitro group is a "sink" of electron Nitroso vs. olefin: e Diels-Alder reaction: as dienophiles Nu O NO − NO Ene reaction 3 2 2 NO + N R h 2 O e Cope rearrangement υ O O Nu R2 N N N R1 N Nitroso vs. carbonyl R1 O O O O O N O O hυ Nucleophilic addition [O] N R2 R O O R3 Other reaction modes nitrite Radical addition high temp low temp nitrolium EWG [H] ion brown color less ion Redox reaction Photochemical reaction Nitroso Compounds (C-Nitroso Compounds) R2 R1 O R3 R1 Synthesis of C-Nitroso Compounds 2 O R1 R 2 N R3 3 R 3 N R N R N 3 + R2 2 R N O With NO sources: NaNO2/HCl, NOBF4, NOCl, NOSbF6, RONO... 1 R O R R1 O Substitution trans-dimer monomer: blue color cis-dimer colorless colorless R R NOBF OH 4 - R = OH, OMe, Me, NR2, NHR N R2 R3 = H or NaNO /HCl - para-selectivity ΔG = 10 Kcal mol-1 Me 2 Me R1 NO oxime R rate determining step Blue color: n π∗ absorption band 630-790 nm IR: υ(N=O): 1621-1539 cm-1, dimer υ(N−O): 1300 (cis), 1200 (trans) cm-1 + 1 Me H NMR (α-C-H) δ = 4 ppm: nitroso is an EWG ON H 3 Kochi et al. -
Of Grignard Reagent Formation. the Surface Nature of the Reaction
286 Ace. Chem. Res. 1990,23, 286-293 Mechanism of Grignard Reagent Formation. The Surface Nature of the Reaction H. M. WALBORSKY Dittmer Laboratory of Chemistry, Florida State University, Tallahassee, Florida 32306 Received February 23, 1990 (Revised Manuscript Received May 7, 1990) The reaction of organic halides (Br, C1, I) with mag- Scheme I nesium metal to yield what is referred to today as a Kharasch-Reinmuth Mechanism for Grignard Reagent Grignard reagent has been known since the turn of the Formation century,' The name derives from its discoverer, Nobel (1)(Mg0)AMg*)2y + RX 4 [(M~'~(MQ')~~-,('MQX)+ R.] + laureate Victor Grignard. How this reagent is formed, (Mgo)x-2(MQ')2~MgX)(MgR) that is, how a magnesium atom is inserted into a car- bon-halogen bond, is the subject of this Account. ('4 (Ms0),-*(M9')2~MgX)(MgR) + + (Mg0)x-dMg*)2y+2 + 2RMgX RX + Mg - RMgX Kharasch and Reinmuth,, persuaded by the work of late under the same conditions gave Itl = 6.2 X s-l. Another system that meets the above criterion is the Gomberg and Bachmad as well as by product analyses of many Grignard formation reactions that existed in vinyl system. The lack of reactivity of vinyl halides toward SN1reactions is well-known and is exemplified the literature prior to 1954,speculated that the reaction involved radicals and that the radical reactions might by the low solvolysis rate of 2-propenyl triflate5 in 80% involve "surface adherent radicals, at least in part". The ethanol at 25 OC, kl being 9.8 X s-l. -
Acetaldehyde Oxime Hazard Summary Identification
Common Name: ACETALDEHYDE OXIME CAS Number: 107-29-9 RTK Substance number: 0003 DOT Number: UN 2332 Date: March 1987 Revision: August 1998 ------------------------------------------------------------------------- ------------------------------------------------------------------------- HAZARD SUMMARY WORKPLACE EXPOSURE LIMITS * Acetaldehyde Oxime can affect you when breathed in and No occupational exposure limits have been established for by passing through your skin. Acetaldehyde Oxime. This does not mean that this substance * Contact can irritate the eyes and skin. is not harmful. Safe work practices should always be * Breathing Acetaldehyde Oxime can irritate the nose and followed. throat. * Acetaldehyde Oxime is a FLAMMABLE LIQUID and a * It should be recognized that Acetaldehyde Oxime can be FIRE HAZARD. absorbed through your skin, thereby increasing your exposure. IDENTIFICATION Acetaldehyde Oxime is a colorless liquid or crystalline WAYS OF REDUCING EXPOSURE (needle-like) solid. It is used to make other chemicals. * Where possible, enclose operations and use local exhaust ventilation at the site of chemical release. If local exhaust REASON FOR CITATION ventilation or enclosure is not used, respirators should be * Acetaldehyde Oxime is on the Hazardous Substance List worn. because it is cited by DOT. * Wear protective work clothing. * This chemical is on the Special Health Hazard Substance * Wash thoroughly immediately after exposure to List because it is FLAMMABLE. Acetaldehyde Oxime and at the end of the workshift. * Definitions are provided on page 5. * Post hazard and warning information in the work area. In addition, as part of an ongoing education and training HOW TO DETERMINE IF YOU ARE BEING effort, communicate all information on the health and safety hazards of Acetaldehyde Oxime to potentially EXPOSED exposed workers. -
A Dictionary of Chinese Characters: Accessed by Phonetics
A dictionary of Chinese characters ‘The whole thrust of the work is that it is more helpful to learners of Chinese characters to see them in terms of sound, than in visual terms. It is a radical, provocative and constructive idea.’ Dr Valerie Pellatt, University of Newcastle. By arranging frequently used characters under the phonetic element they have in common, rather than only under their radical, the Dictionary encourages the student to link characters according to their phonetic. The system of cross refer- encing then allows the student to find easily all the characters in the Dictionary which have the same phonetic element, thus helping to fix in the memory the link between a character and its sound and meaning. More controversially, the book aims to alleviate the confusion that similar looking characters can cause by printing them alongside each other. All characters are given in both their traditional and simplified forms. Appendix A clarifies the choice of characters listed while Appendix B provides a list of the radicals with detailed comments on usage. The Dictionary has a full pinyin and radical index. This innovative resource will be an excellent study-aid for students with a basic grasp of Chinese, whether they are studying with a teacher or learning on their own. Dr Stewart Paton was Head of the Department of Languages at Heriot-Watt University, Edinburgh, from 1976 to 1981. A dictionary of Chinese characters Accessed by phonetics Stewart Paton First published 2008 by Routledge 2 Park Square, Milton Park, Abingdon, OX14 4RN Simultaneously published in the USA and Canada by Routledge 270 Madison Ave, New York, NY 10016 Routledge is an imprint of the Taylor & Francis Group, an informa business This edition published in the Taylor & Francis e-Library, 2008. -
The Two Faces of the Guanyl Radical: Molecular Context and Behavior
molecules Review The Two Faces of the Guanyl Radical: Molecular Context and Behavior Chryssostomos Chatgilialoglu 1,2 1 ISOF, Consiglio Nazionale delle Ricerche, 40129 Bologna, Italy; [email protected]; Tel.: +39-051-6398309 2 Center of Advanced Technologies, Adam Mickiewicz University, 61-712 Pozna´n,Poland Abstract: The guanyl radical or neutral guanine radical G(-H)• results from the loss of a hydrogen atom (H•) or an electron/proton (e–/H+) couple from the guanine structures (G). The guanyl radical exists in two tautomeric forms. As the modes of formation of the two tautomers, their relationship and reactivity at the nucleoside level are subjects of intense research and are discussed in a holistic manner, including time-resolved spectroscopies, product studies, and relevant theoretical calculations. Particular attention is given to the one-electron oxidation of the GC pair and the complex mechanism of the deprotonation vs. hydration step of GC•+ pair. The role of the two G(-H)• tautomers in single- and double-stranded oligonucleotides and the G-quadruplex, the supramolecular arrangement that attracts interest for its biological consequences, are considered. The importance of biomarkers of guanine DNA damage is also addressed. Keywords: guanine; guanyl radical; tautomerism; guanine radical cation; oligonucleotides; DNA; G-quadruplex; time-resolved spectroscopies; reactive oxygen species (ROS); oxidation 1. The Guanine Sink Citation: Chatgilialoglu, C. The Two The free radical chemistry associated with guanine (Gua) and its derivatives, guano- Faces of the Guanyl Radical: sine (Guo), 2’-deoxyguanosine (dGuo), guanosine-50-monophosphate (GMP), and 20- Molecular Context and Behavior. deoxyguanosine-50-monophosphate (dGMP), is of particular interest due to its biological Molecules 2021, 26, 3511. -
Lesson 3 Yet One More Proverb
Lesson 3 Yet One More Proverb 萬物得其本者生,百事得其道者成。道之所在,天下歸之。德之所 在,天下貴之。仁之所在,天下愛之。義之所在,天下畏之。屋漏 者,民去之。水淺者,魚逃之。樹高者,鳥宿之。德厚者,士趨之。 有禮者,民畏之。忠信者,士死之。 VOCABULARY (71–101) 71. 萬 M: wàn J: man, ban K: man Ten thousand. Radical 140 (艸). 72. 物 M: wù J: butsu, motsu, mono K: mul Thing; physical object. 萬物, “the ten thousand things,” is a common expression for all the things in the world. Radical 93 (牛, “cow”). 73. 其 M: qí J: ki, sore, sono K: gi 1. This; that; these; those; its; his; her; their. [possessive and demonstrative adjective]* 2. Perhaps, probably, should. [vague modal adverb] This character is extremely common in literary Chinese constructions. For details of the first meaning, see 3.1. The second meaning will be encountered and explained later (11.6). Radical 12 (八, “eight”). 74. 本 M: bĕn J: hon, moto K: bon [Tree] root; fundamental; basics. In Chinese philosophy, 本 is often used to express important things, first things, or the essential nature of things. Radical 75 (木). 75. 百 M: băi J: byaku, hyaku, momo K: baek One hundred. Radical 106 (白, “white”). Lesson 3 w 2 76. 事 M: shì J: ji, koto, tsukaeru K: sa 1. Thing, matter, affair, occupation, job.* 2. To serve, to work for; to employ, to have as a servant. In modern Mandarin Chinese, 物 (72) tends to apply to physical objects, whereas 事 applies to matters, affairs, and abstract things. This holds true to a certain extent in literary Chi- nese, but there is some confusion of the terms. -
Radical Hydroacylation of C-C and N-N Double Bonds in Air
University College London Radical Hydroacylation of C-C and N-N Double Bonds in Air by Jenna Marie Ahern Submitted in partial fulfilment of the requirements for the degree of Doctor of Philosophy Declaration I, Jenna Marie Ahern, confirm that the work presented in this thesis is my own. Where information has been derived from other sources, I confirm that this has been indicated in the thesis. Jenna Marie Ahern October 2010 Radical Hydroacylation of C-C and N-N Double Bonds in Air Jenna Marie Ahern Abstract The formation of C-C and C-N bonds in modern organic synthesis is a key target for methodological advancement. Current methods of C-C and C-N bond formation often involve the use of expensive catalysts, or sub-stoichiometric reagents, which can lead to the generation of undesirable waste products. This thesis describes a novel and environmentally benign set of reaction conditions for the formation of C-C and C-N bonds by hydroacylation and this is promoted by mixing two reagents, an aldehyde and an electron-deficient double bond, under freely available atmospheric oxygen at room temperature Chapter 1 will provide an introduction to the thesis and mainly discusses methods for C-C bond formation, in particular, radical chemistry and hydroacylation. Chapter 2 describes the hydroacylation of vinyl sulfonates and vinyl sulfones (C-C double bonds) with aliphatic and aromatic aldehydes with a discussion and evidence for the mechanism of the transformation. Chapter 3 details the synthesis of precursors for intramolecular cyclisations and studies into aerobic intramolecular cyclisations. Chapter 4 describes the hydroacylation of vinyl phosphonates (C-C double bonds) and diazocarboxylates (N-N double bonds) with aliphatic and aromatic aldehydes bearing functional groups. -
Synthesis and Biological Importance of Amide Analogues
REVIEW ARTICLE Synthesis and biological importance of amide analogues Preeti Rajput, Abhilekha Sharma* Rajput P, Sharma A. Synthesis and biological importance of amide amide linage containing compounds. The main purpose of article is to analogues. J Pharmacol Med Chem 2018;2(1):22-31. provide information on the development of novel amide derivatives to the scientific community. Doing so, it focuses on mechanisms of action and ABSTRACT adverse events, and suggests measures to be implemented in the clinical The present research article deals with the amide analogues prepared by practice according to bioethical principles. available very well-known name reactions. The author have studied the name reactions like Beckmann rearrangement, Schmidt reaction, Passerine reaction, Key Words: Novel amide derivatives; Amide analogues; Amide formation Willgerodt–Kindler reaction and UGI reaction, which involves preparation of routes starting from substrates other than carboxylic acids and their T he Amide bond formation reactions are among the most important derivatives (5). Thus, with the help of transition metals, a plethora of transformations in organic chemistry and biochemistry because of the functional groups, such as nitriles, aldehydes, ketones, oximes, primary widespread occurrence of amides in pharmaceuticals, natural products alcohols or amines, can be now conveniently employed as starting and biologically active compounds. The amide group is widely present in materials for the construction of the amide bond. There are three types of the drugs, intermediates, pharmaceuticals, and natural products. It is also amides available in Chemistry: (i) an organic amide which is also referred available in large number of industrial materials including polymers, as carboxamide, (ii) a sulfonamide, and (iii) a phosphoramide. -
Conjugated, Carbon-Centered Radicals
molecules Review Synthesis, Physical Properties, and Reactivity of Stable, π-Conjugated, Carbon-Centered Radicals Takashi Kubo Department of Chemistry, Graduate School of Science, Osaka University, Toyonaka, Osaka 560-0043, Japan; [email protected] Received: 26 January 2019; Accepted: 11 February 2019; Published: 13 February 2019 Abstract: Recently, long-lived, organic radical species have attracted much attention from chemists and material scientists because of their unique electronic properties derived from their magnetic spin and singly occupied molecular orbitals. Most stable and persistent organic radicals are heteroatom-centered radicals, whereas carbon-centered radicals are generally very reactive and therefore have had limited applications. Because the physical properties of carbon-centered radicals depend predominantly on the topology of the π-electron array, the development of new carbon-centered radicals is key to new basic molecular skeletons that promise novel and diverse applications of spin materials. This account summarizes our recent studies on the development of novel carbon-centered radicals, including phenalenyl, fluorenyl, and triarylmethyl radicals. Keywords: π-conjugated radicals; hydrocarbon radicals; persistent; anthryl; phenalenyl; fluorenyl 1. Introduction Organic radical species are generally recognized as highly reactive, intermediate species. However, recently, functional materials taking advantage of the feature of open-shell electronic structure have attracted much attention from chemists and material scientists; therefore, the development of novel, long-lived, organic, radical species becomes more important [1–7]. Nitronyl nitroxides, galvinoxyl, and DPPH are well known as stable, organic, radical species, which are commercially available chemicals. These stable radical species are “heteroatom-centered radicals”, in which unpaired electrons are mainly distributed on heteroatoms. -
Unimolecular N−OH Homolysis, Stepwise Dehydration, Or Triazene Ring-Opening Jian Yin,† Rainer Glaser,*,† and Kent S
Article pubs.acs.org/crt On the Reaction Mechanism of Tirapazamine Reduction Chemistry: Unimolecular N−OH Homolysis, Stepwise Dehydration, or Triazene Ring-Opening Jian Yin,† Rainer Glaser,*,† and Kent S. Gates*,†,‡ † ‡ Departments of Chemistry and Biochemistry, University of Missouri, Columbia, Missouri 65211, United States *S Supporting Information ABSTRACT: The initial steps of the activation of tirapazamine (TPZ, 1, 3-amino-1,2,4-benzotriazine 1,4-N,N-dioxide) under hypoxic con- ditions consist of the one-electron reduction of 1 to radical anion 2 and the protonation of 2 at O(N4) or O(N1) to form neutral radicals 3 and 4, respectively. There are some questions, however, as to whether radicals 3 and/or 4 will then undergo N−OH homolyses 3 → 5 + ·OH and 4 → 6 + ·OH or, alternatively, whether 3 and/or 4 may → react by dehydration and form aminyl radicals via 3 11 +H2O and 4 → → 12 +H2O or phenyl radicals via 3 17 +H2O. These outcomes might depend on the chemistry after the homolysis of 3 and/or 4, that is, dehydration may be the result of a two-step sequence that involves N−OH homolysis and formation of ·OH aggregates of 5 and 6 followed by H-abstraction within the ·OH aggregates to form hydrates of aminyls 11 and 12 or of phenyl 17. We studied these processes with configuration interaction theory, perturbation theory, and density functional theory. All stationary structures of OH aggregates of 5 and 6,ofH2O aggregates of 11, 12, and 17, and of the transition state structures for H-abstraction were located and characterized by vibrational analysis and with methods of electron and spin-density analysis. -
Deoxyuridine-5'-Phosphate, Uridine-5-Phosphate and Thymidine-5-Phosphate
The SO 4-induced Oxidation of 2'-Deoxyuridine-5'-phosphate, Uridine-5-phosphate and Thymidine-5-phosphate. An ESR Study in Aqueous Solution Knut Hildenbrand Max-Planck-Institut für Strahlenchemie, Stiftstraße 34, D-4330 Mülheim a. d. Ruhr, Bundesrepublik Deutschland Z. Naturforsch. 45c, 47-58 (1990); received August 9, 1989 In memoriam Professor Dr. O. E. Polansky Free Radicals, ESR, Pyrimidine-5'-nucleotides, Radical Cation Reactions of photolytically generated SOJ with 2'-deoxyuridine-5'-phosphate (5'-dUMP), uridine-5'-phosphate (5'-UMP) and thymidine-5'-phosphate (5'-dTMP) were studied by ESR spectroscopy in aqueous solution under anoxic conditions. From 5'-dUMP and 5'-UMP the 5',5-cyclic phosphate- 6-yl radicals 10 and 11 were generated (pH 2-11) whereas from 5'-dTMP at .pH 3-8 the 5,6-dihydro-6-hydroxy-5-yl radical 14 and at pH 7-11 the 5-methylene-2'-deoxyuridine-5'-phosphate radical 15 was produced. In the experiments with 5'-UMP in addition to radical 11 the signals of sugar radicals 12 and 13 were detected. It is assumed that the base radical cations act as intermediates in the SO^-induced radical reac tions. The 5'-phosphate group adds intramolecularly to the C(5)-C(6) bond of the uraclilyl radical cation whereas the thymidyl radical cation of 5'-dTMP reacts with H20 at pH < 8 to yield the 6-OH-5-yl adduct 14 and deprotonates at pH > 7 thus forming the allyl-type radical 15. In 5'-UMP transfer of the radical site from the base to the sugar moiety competes with intramolecular phosphate addition. -
Cyclohexanone Oxime
National Toxicology Program Toxicity Report Series Number 50 NTP Technical Report on Toxicity Studies of Cyclohexanone Oxime (CAS No. 100-64-1) Administered by Drinking Water to B6C3F1 Mice Leo T. Burka, Ph.D., Study Scientist National Toxicology Program Post Office Box 12233 Research Triangle Park, NC 27709 United States Department of Health and Human Services Public Health Service National Institutes of Health Note to the Reader The National Toxicology Program (NTP) is made up of four charter agencies of the United States Department of Health and Human Services (DHHS): the National Cancer Institute (NCI) of the National Institutes of Health; the National Institute of Environmental Health Sciences (NIEHS) of the National Institutes of Health; the National Center for Toxicological Research (NCTR) of the Food and Drug Administration; and the National Institute for Occupational Safety and Health (NIOSH) of the Centers for Disease Control. In July 1981, the Carcinogenesis Bioassay Testing Program was transferred from NCI to NIEHS. NTP coordinates the relevant Public Health Service programs, staff, and resources that are concerned with basic and applied research and with biological assay development and validation. NTP develops, evaluates, and disseminates scientific information about potentially toxic and hazardous chemicals. This knowledge is used for protecting the health of the American people and for the primary prevention of disease. NTP designs and conducts studies to characterize and evaluate the toxicologic potential of selected chemicals in laboratory animals (usually two species, rats and mice). Chemicals selected for NTP toxicology studies are chosen primarily on the bases of human exposure, level of production, and chemical structure.