New Blatter-Type Radicals from a Bench-Stable Carbene
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A Photoionization Reflectron Time‐Of‐Flight Mass Spectrometric
Articles ChemPhysChem doi.org/10.1002/cphc.202100064 A Photoionization Reflectron Time-of-Flight Mass Spectrometric Study on the Detection of Ethynamine (HCCNH2) and 2H-Azirine (c-H2CCHN) Andrew M. Turner,[a, b] Sankhabrata Chandra,[a, b] Ryan C. Fortenberry,*[c] and Ralf I. Kaiser*[a, b] Ices of acetylene (C2H2) and ammonia (NH3) were irradiated with 9.80 eV, and 10.49 eV were utilized to discriminate isomers energetic electrons to simulate interstellar ices processed by based on their known ionization energies. Results indicate the galactic cosmic rays in order to investigate the formation of formation of ethynamine (HCCNH2) and 2H-azirine (c-H2CCHN) C2H3N isomers. Supported by quantum chemical calculations, in the irradiated C2H2:NH3 ices, and the energetics of their experiments detected product molecules as they sublime from formation mechanisms are discussed. These findings suggest the ices using photoionization reflectron time-of-flight mass that these two isomers can form in interstellar ices and, upon spectrometry (PI-ReTOF-MS). Isotopically-labeled ices confirmed sublimation during the hot core phase, could be detected using the C2H3N assignments while photon energies of 8.81 eV, radio astronomy. 1. Introduction acetonitrile (CH3CN; 1) and methyl isocyanide (CH3NC; 2) ‘isomer doublet’ (Figure 2) – the methyl-substituted counterparts of For the last decade, the elucidation of the fundamental reaction hydrogen cyanide (HCN) and hydrogen isocyanide (HNC) – has pathways leading to structural isomers – molecules with the been detected toward the star-forming region SgrB2.[4,8–9] same molecular formula, but distinct connectivities of atoms – However, none of their higher energy isomers has ever been of complex organic molecules (COMs) in the interstellar identified in any astronomical environment: 2H-azirine (c- [10–14] [15–19] medium (ISM) has received considerable interest from the NCHCH2; 3), ethynamine (HCCNH2; 4), ketenimine [1–3] [20] [21] astrochemistry and physical chemistry communities. -
A Chemical Kinetics Network for Lightning and Life in Planetary Atmospheres P
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by St Andrews Research Repository The Astrophysical Journal Supplement Series, 224:9 (33pp), 2016 May doi:10.3847/0067-0049/224/1/9 © 2016. The American Astronomical Society. All rights reserved. A CHEMICAL KINETICS NETWORK FOR LIGHTNING AND LIFE IN PLANETARY ATMOSPHERES P. B. Rimmer and Ch Helling School of Physics and Astronomy, University of St Andrews, St Andrews, KY16 9SS, UK; [email protected] Received 2015 June 3; accepted 2015 October 22; published 2016 May 23 ABSTRACT There are many open questions about prebiotic chemistry in both planetary and exoplanetary environments. The increasing number of known exoplanets and other ultra-cool, substellar objects has propelled the desire to detect life andprebiotic chemistry outside the solar system. We present an ion–neutral chemical network constructed from scratch, STAND2015, that treats hydrogen, nitrogen, carbon, and oxygen chemistry accurately within a temperature range between 100 and 30,000 K. Formation pathways for glycine and other organic molecules are included. The network is complete up to H6C2N2O3. STAND2015 is successfully tested against atmospheric chemistry models for HD 209458b, Jupiter, and the present-day Earth using a simple one- dimensionalphotochemistry/diffusion code. Our results for the early Earth agree with those of Kasting for CO2,H2, CO, and O2, but do not agree for water and atomic oxygen. We use the network to simulate an experiment where varied chemical initial conditions are irradiated by UV light. The result from our simulation is that more glycine is produced when more ammonia and methane is present. -
The Two Faces of the Guanyl Radical: Molecular Context and Behavior
molecules Review The Two Faces of the Guanyl Radical: Molecular Context and Behavior Chryssostomos Chatgilialoglu 1,2 1 ISOF, Consiglio Nazionale delle Ricerche, 40129 Bologna, Italy; [email protected]; Tel.: +39-051-6398309 2 Center of Advanced Technologies, Adam Mickiewicz University, 61-712 Pozna´n,Poland Abstract: The guanyl radical or neutral guanine radical G(-H)• results from the loss of a hydrogen atom (H•) or an electron/proton (e–/H+) couple from the guanine structures (G). The guanyl radical exists in two tautomeric forms. As the modes of formation of the two tautomers, their relationship and reactivity at the nucleoside level are subjects of intense research and are discussed in a holistic manner, including time-resolved spectroscopies, product studies, and relevant theoretical calculations. Particular attention is given to the one-electron oxidation of the GC pair and the complex mechanism of the deprotonation vs. hydration step of GC•+ pair. The role of the two G(-H)• tautomers in single- and double-stranded oligonucleotides and the G-quadruplex, the supramolecular arrangement that attracts interest for its biological consequences, are considered. The importance of biomarkers of guanine DNA damage is also addressed. Keywords: guanine; guanyl radical; tautomerism; guanine radical cation; oligonucleotides; DNA; G-quadruplex; time-resolved spectroscopies; reactive oxygen species (ROS); oxidation 1. The Guanine Sink Citation: Chatgilialoglu, C. The Two The free radical chemistry associated with guanine (Gua) and its derivatives, guano- Faces of the Guanyl Radical: sine (Guo), 2’-deoxyguanosine (dGuo), guanosine-50-monophosphate (GMP), and 20- Molecular Context and Behavior. deoxyguanosine-50-monophosphate (dGMP), is of particular interest due to its biological Molecules 2021, 26, 3511. -
Radical Hydroacylation of C-C and N-N Double Bonds in Air
University College London Radical Hydroacylation of C-C and N-N Double Bonds in Air by Jenna Marie Ahern Submitted in partial fulfilment of the requirements for the degree of Doctor of Philosophy Declaration I, Jenna Marie Ahern, confirm that the work presented in this thesis is my own. Where information has been derived from other sources, I confirm that this has been indicated in the thesis. Jenna Marie Ahern October 2010 Radical Hydroacylation of C-C and N-N Double Bonds in Air Jenna Marie Ahern Abstract The formation of C-C and C-N bonds in modern organic synthesis is a key target for methodological advancement. Current methods of C-C and C-N bond formation often involve the use of expensive catalysts, or sub-stoichiometric reagents, which can lead to the generation of undesirable waste products. This thesis describes a novel and environmentally benign set of reaction conditions for the formation of C-C and C-N bonds by hydroacylation and this is promoted by mixing two reagents, an aldehyde and an electron-deficient double bond, under freely available atmospheric oxygen at room temperature Chapter 1 will provide an introduction to the thesis and mainly discusses methods for C-C bond formation, in particular, radical chemistry and hydroacylation. Chapter 2 describes the hydroacylation of vinyl sulfonates and vinyl sulfones (C-C double bonds) with aliphatic and aromatic aldehydes with a discussion and evidence for the mechanism of the transformation. Chapter 3 details the synthesis of precursors for intramolecular cyclisations and studies into aerobic intramolecular cyclisations. Chapter 4 describes the hydroacylation of vinyl phosphonates (C-C double bonds) and diazocarboxylates (N-N double bonds) with aliphatic and aromatic aldehydes bearing functional groups. -
The WMS Model
Electronic Supplementary Material (ESI) for Physical Chemistry Chemical Physics. This journal is © the Owner Societies 2018 S-1 ELECTRONIC SUPPLEMENTARY INFORMATION OCT. 8, 2018 Extrapolation of High-Order Correlation Energies: The WMS Model Yan Zhao,a Lixue Xia,a Xiaobin Liao,a Qiu He,a Maria X. Zhao,b and Donald G. Truhlarc aState Key Laboratory of Silicate Materials for Architectures,International School of Materials Science and Engineering, Wuhan University of Technology, Wuhan 430070, People’s Republic of China. bLynbrook High School, 1280 Johnson Avenue, San Jose, California 95129 cDepartment of Chemistry and Supercomputing Institute, University of Minnesota, 207 Pleasant Street S.E., Minneapolis, MN 55455-0431 TABLE OF CONTENTS Table S1: Calculated classical barrier heights (kcal/mol) for the DBH24-W4 database S-2 Table S2: RMSE of the scalar relativistic contribution in WMS (kcal/mol) S-3 Table S3: RMSE of the composite methods for the W4-17 database (kcal/mol) S-4 Table S4: Calculated Born-Oppenheimer atomization energy (kcal/mol) for the W4-17 database S-5 Table S5: Example input file for a WMS calculation: the H2O molecule S-11 Table S6: Example input file for a WMS calculation: the CH3 radical S-12 Table S7. perl scripts for performing WMS calculations S-13 S-2 Table S1: Calculated classical barrier heights (kcal/mol) for the DBH24-W4 database (The ZPE contributions are excluded.) Reactions Best Est. WMS Hydrogen Atom Transfers ! ∆E! 6.35 6.25 OH + CH4 → CH3 + H2O ! ∆E! 19.26 19.28 ! ∆E! 10.77 10.88 H + OH → O + H2 ! ∆E! 13.17 -
Conjugated, Carbon-Centered Radicals
molecules Review Synthesis, Physical Properties, and Reactivity of Stable, π-Conjugated, Carbon-Centered Radicals Takashi Kubo Department of Chemistry, Graduate School of Science, Osaka University, Toyonaka, Osaka 560-0043, Japan; [email protected] Received: 26 January 2019; Accepted: 11 February 2019; Published: 13 February 2019 Abstract: Recently, long-lived, organic radical species have attracted much attention from chemists and material scientists because of their unique electronic properties derived from their magnetic spin and singly occupied molecular orbitals. Most stable and persistent organic radicals are heteroatom-centered radicals, whereas carbon-centered radicals are generally very reactive and therefore have had limited applications. Because the physical properties of carbon-centered radicals depend predominantly on the topology of the π-electron array, the development of new carbon-centered radicals is key to new basic molecular skeletons that promise novel and diverse applications of spin materials. This account summarizes our recent studies on the development of novel carbon-centered radicals, including phenalenyl, fluorenyl, and triarylmethyl radicals. Keywords: π-conjugated radicals; hydrocarbon radicals; persistent; anthryl; phenalenyl; fluorenyl 1. Introduction Organic radical species are generally recognized as highly reactive, intermediate species. However, recently, functional materials taking advantage of the feature of open-shell electronic structure have attracted much attention from chemists and material scientists; therefore, the development of novel, long-lived, organic, radical species becomes more important [1–7]. Nitronyl nitroxides, galvinoxyl, and DPPH are well known as stable, organic, radical species, which are commercially available chemicals. These stable radical species are “heteroatom-centered radicals”, in which unpaired electrons are mainly distributed on heteroatoms. -
Photoredox Α‑Vinylation of Α‑Amino Acids and N‑Aryl Amines Adam Noble and David W
Communication pubs.acs.org/JACS Open Access on 07/14/2015 Photoredox α‑Vinylation of α‑Amino Acids and N‑Aryl Amines Adam Noble and David W. C. MacMillan* Merck Center for Catalysis at Princeton University, Princeton, New Jersey 08544, United States *S Supporting Information radicals to the direct synthesis of allylic amines from N-aryl ABSTRACT: A new coupling protocol has been amines or α-amino acids. Specifically, we hypothesized that allyl developed that allows the union of vinyl sulfones with amines should be accessible via exposure of α-amino radicals to photoredox-generated α-amino radicals to provide allylic olefins that can generically participate in radical-based vinylation amines of broad diversity. Direct C−H vinylations of N- mechanisms (i.e., incorporate leaving groups that are susceptible aryl tertiary amines, as well as decarboxylative vinylations to single-electron β-elimination pathways). As an overarching of N-Boc α-amino acids, proceed in high yield and with goal of this work we hoped to demonstrate that photoredox- excellent olefin geometry control. The utility of this new generated α-amino radicals provide a complementary approach allyl amine forming reaction has been demonstrated via the to allyl amine production in comparison to stoichiometric metal- syntheses of several natural products and a number of based technologies. Herein, we describe the successful execution established pharmacophores. of these ideals and present the first direct C−H vinylation of N- aryl tertiary amines and the first decarboxylative olefination of N- Boc α-amino acids using vinyl sulfones in the presence of isible light photoredox catalysis has recently emerged as a iridium-based MLCT catalysts. -
Nature of the First Electron Transfer in Electrochemical Ammonia Activation in a Nonaqueous Medium
Nature of the First Electron Transfer in Electrochemical Ammonia Activation in a Nonaqueous Medium The MIT Faculty has made this article openly available. Please share how this access benefits you. Your story matters. Citation Schiffer, Zachary et al. "Nature of the First Electron Transfer in Electrochemical Ammonia Activation in a Nonaqueous Medium." Journal of Physical Chemistry C 123, 15 (April 2019): 9713-9720 © 2019 American Chemical Society As Published http://dx.doi.org/10.1021/ACS.JPCC.9B00669 Publisher American Chemical Society (ACS) Version Author's final manuscript Citable link https://hdl.handle.net/1721.1/124016 Terms of Use Article is made available in accordance with the publisher's policy and may be subject to US copyright law. Please refer to the publisher's site for terms of use. Nature of the First Electron Transfer in Electrochemical Ammonia Activation in a Non-Aqueous Medium Zachary J Schiffer1, Nikifar Lazouski1, Nathan Corbin1, Karthish Manthiram1,* 1Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA *Corresponding Author: 617-715-5740, [email protected] 1 Abstract Decreasing costs of renewable sources of electricity will increase the viability of electrochemical processes in chemical manufacturing. To this end, improved understanding of electrochemical N-H bond activation is essential to develop electrochemical routes for nitrogen-containing chemicals. In this work, we investigate electrochemical ammonia activation in acetonitrile, a prototypical non-aqueous solvent for electro-organic syntheses. Non-aqueous environments are desirable for electro- organic syntheses due to large electrochemical stability windows and high solubility for organic products. We find that ammonia oxidation in acetonitrile proceeds through an outer-sphere mechanism involving an initial electron transfer as the rate-determining step, likely producing an ammonia radical cation. -
Photoredox Activation of Carbon Dioxide for Amino Acid Synthesis in Continuous Flow
Photoredox activation of carbon dioxide for amino acid synthesis in continuous flow The MIT Faculty has made this article openly available. Please share how this access benefits you. Your story matters. Citation Seo, Hyowon et al. “Photoredox Activation of Carbon Dioxide for Amino Acid Synthesis in Continuous Flow.” Nature Chemistry 9, 5 (December 2016): 453–456 © 2017 Macmillan Publisher Limited part of Springer Nature As Published http://dx.doi.org/10.1038/NCHEM.2690 Publisher Nature Publishing Group Version Author's final manuscript Citable link http://hdl.handle.net/1721.1/113316 Terms of Use Article is made available in accordance with the publisher's policy and may be subject to US copyright law. Please refer to the publisher's site for terms of use. HHS Public Access Author manuscript Author ManuscriptAuthor Manuscript Author Nat Chem Manuscript Author . Author manuscript; Manuscript Author available in PMC 2017 June 26. Published in final edited form as: Nat Chem. 2017 May ; 9(5): 453–456. doi:10.1038/nchem.2690. Photoredox activation of carbon dioxide for amino acid synthesis in continuous flow Hyowon Seo1, Matthew H. Katcher1, and Timothy F. Jamison1,* 1Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA Abstract Although carbon dioxide (CO2) is highly abundant, its low reactivity has limited its use in chemical synthesis. In particular, methods for carbon–carbon bond formation generally rely on two-electron mechanisms for CO2 activation and require highly activated reaction partners. Alternatively, radical pathways accessed via photoredox catalysis could provide new reactivity under milder conditions. Here we demonstrate the direct coupling of CO2 and amines via the single-electron reduction of CO2 for the photoredox-catalyzed, continuous flow synthesis of α- amino acids. -
Arxiv:1510.07052V1 [Astro-Ph.EP] 23 Oct 2015 99 Lae Ta.20,Adrfrne Therein)
A Chemical Kinetics Network for Lightning and Life in Planetary Atmospheres P. B. Rimmer1 and Ch Helling School of Physics and Astronomy, University of St Andrews, St Andrews, KY16 9SS, United Kingdom ABSTRACT There are many open questions about prebiotic chemistry in both planetary and exoplane- tary environments. The increasing number of known exoplanets and other ultra-cool, substellar objects has propelled the desire to detect life and prebiotic chemistry outside the solar system. We present an ion-neutral chemical network constructed from scratch, Stand2015, that treats hydrogen, nitrogen, carbon and oxygen chemistry accurately within a temperature range between 100 K and 30000 K. Formation pathways for glycine and other organic molecules are included. The network is complete up to H6C2N2O3. Stand2015 is successfully tested against atmo- spheric chemistry models for HD209458b, Jupiter and the present-day Earth using a simple 1D photochemistry/diffusion code. Our results for the early Earth agree with those of Kasting (1993) for CO2, H2, CO and O2, but do not agree for water and atomic oxygen. We use the network to simulate an experiment where varied chemical initial conditions are irradiated by UV light. The result from our simulation is that more glycine is produced when more ammonia and methane is present. Very little glycine is produced in the absence of any molecular nitrogen and oxygen. This suggests that production of glycine is inhibited if a gas is too strongly reducing. Possible applications and limitations of the chemical kinetics network are also discussed. Subject headings: astrobiology — atmospheric effects — molecular processes — planetary systems 1. Introduction The input energy source and the initial chem- istry have been varied across these different ex- The potential connection between a focused periments. -
"Radical Stability --- Thermochemical Aspects" In
Radical Stability—Thermochemical Aspects Johnny Hioe and Hendrik Zipse Department of Chemistry, LMU M¨unchen, M¨unchen, Germany 1 INTRODUCTION is quite challenging. Kinetic data, in contrast, are much more difficult to predict by theory, while the The terms “transient” and “persistent” are used determination of reaction rates can be approached frequently in the scientific literature to describe experimentally with a variety of direct or indirect the kinetic properties of open shell systems in methods, at least for sufficiently fast reactions homogeneous solution.1–5 The hydroxyl radical (see Radical Kinetics and Clocks). Theory and (HO•, 1), for example, is a transient species of experiment pair up nicely in this respect, as a central importance in atmospheric chemistry (see combination of these approaches is able to provide Atmospheric Radical Chemistry), as well as one a comprehensive picture of thermodynamic and of the most important reactive oxygen species kinetic data. (ROS) in aqueous solution, whereas the nitroxide 2,2,6,6-tetramethylpiperidine-1-oxyl, TEMPO (2)is a persistent radical stable enough to be bottled and 2 DEFINITIONS OF RADICAL STABILITY sold in bulk (Figure 1) (see Nitroxides in Synthetic Radical Chemistry). The thermodynamic stability of C-centered radicals However, despite their widespread use, these can be defined in various ways and several options terms are not too helpful for a quantitative approach are discussed in the following.6–10 One of the to radical chemistry as they do not reflect the most often used definitions is based on hydrogen influence of thermochemical driving force and transfer reactions as shown in Scheme 1 for reaction • intrinsic reaction barrier on the observed lifetime. -
Radical Aryl Migration Reactions and Synthetic Applications
Chemical Society Reviews Radical Aryl Migration Reactions and Synthetic Applications Journal: Chemical Society Reviews Manuscript ID: CS-REV-12-2014-000467.R1 Article Type: Review Article Date Submitted by the Author: 16-Mar-2015 Complete List of Authors: Chen, Zhi-Min; Shanghai Jiao Tong University, School of Chemistry and Chemical Engineering Zhang, Xiao-Ming; Lanzhou University, State Key Laboratory of Applied Organic Chemistry, Department of Chemistry Tu, Yong Qiang; Lanzhou University, State Key Laboratory of Applied Organic Chemistry + Department of Chemistry Page 1 of 43 Chemical Society Reviews Radical Aryl Migration Reactions and Synthetic Applications Zhi-Min Chen,a,† Xiao-Ming Zhangb,† and Yong-Qiang Tu*a,b a School of Chemistry and Chemical Engineering, Shanghai Jiao Tong University, Shanghai 200240, P. R. China bState Key Laboratory of Applied Organic Chemistry, Lanzhou University, Lanzhou 730000, P. R. China †These authors contributed equally to this work Radical aryl migration reactions are of particular interest to the chemical community due to their potential applications in radical chemistry and organic synthesis. The neophyl rearrangements used as radical clocks for examining the radical-molecular reactions have been known for decades. The combinations of these migrations with other radical reactions have provided a wide range of novel synthetic methodologies that are complementary to nucleophilic rearrangements. This review will give an overview of various types of radical aryl migrations, with an emphasis on their mechanistic studies from a historical point of view, as well as their applications in tandem radical reactions. 1. Introduction Radical aryl migration reactions represent a unique class of organic transformations standing at the intersection of both radical and rearrangement reactions.