Genetic Mosaic Dissection of Lis1 and Ndel1 in Neuronal Migration
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
PROTEOMIC ANALYSIS of HUMAN URINARY EXOSOMES. Patricia
ABSTRACT Title of Document: PROTEOMIC ANALYSIS OF HUMAN URINARY EXOSOMES. Patricia Amalia Gonzales Mancilla, Ph.D., 2009 Directed By: Associate Professor Nam Sun Wang, Department of Chemical and Biomolecular Engineering Exosomes originate as the internal vesicles of multivesicular bodies (MVBs) in cells. These small vesicles (40-100 nm) have been shown to be secreted by most cell types throughout the body. In the kidney, urinary exosomes are released to the urine by fusion of the outer membrane of the MVBs with the apical plasma membrane of renal tubular epithelia. Exosomes contain apical membrane and cytosolic proteins and can be isolated using differential centrifugation. The analysis of urinary exosomes provides a non- invasive means of acquiring information about the physiological or pathophysiological state of renal cells. The overall objective of this research was to develop methods and knowledge infrastructure for urinary proteomics. We proposed to conduct a proteomic analysis of human urinary exosomes. The first objective was to profile the proteome of human urinary exosomes using liquid chromatography-tandem spectrometry (LC- MS/MS) and specialized software for identification of peptide sequences from fragmentation spectra. We unambiguously identified 1132 proteins. In addition, the phosphoproteome of human urinary exosomes was profiled using the neutral loss scanning acquisition mode of LC-MS/MS. The phosphoproteomic profiling identified 19 phosphorylation sites corresponding to 14 phosphoproteins. The second objective was to analyze urinary exosomes samples isolated from patients with genetic mutations. Polyclonal antibodies were generated to recognize epitopes on the gene products of these genetic mutations, NKCC2 and MRP4. The potential usefulness of urinary exosome analysis was demonstrated using the well-defined renal tubulopathy, Bartter syndrome type I and using the single nucleotide polymorphism in the ABCC4 gene. -
Containing Interneurons in Hippocampus of a Murine
RESEARCH ARTICLE Emergence of non-canonical parvalbumin- containing interneurons in hippocampus of a murine model of type I lissencephaly Tyler G Ekins1,2, Vivek Mahadevan1, Yajun Zhang1, James A D’Amour1,3, Gu¨ lcan Akgu¨ l1, Timothy J Petros1, Chris J McBain1* 1Program in Developmental Neurobiology, Eunice Kennedy-Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, United States; 2NIH-Brown University Graduate Partnership Program, Providence, United States; 3Postdoctoral Research Associate Training Program, National Institute of General Medical Sciences, Bethesda, United States Abstract Type I lissencephaly is a neuronal migration disorder caused by haploinsuffiency of the PAFAH1B1 (mouse: Pafah1b1) gene and is characterized by brain malformation, developmental delays, and epilepsy. Here, we investigate the impact of Pafah1b1 mutation on the cellular migration, morphophysiology, microcircuitry, and transcriptomics of mouse hippocampal CA1 parvalbumin-containing inhibitory interneurons (PV+INTs). We find that WT PV+INTs consist of two physiological subtypes (80% fast-spiking (FS), 20% non-fast-spiking (NFS)) and four morphological subtypes. We find that cell-autonomous mutations within interneurons disrupts morphophysiological development of PV+INTs and results in the emergence of a non-canonical ‘intermediate spiking (IS)’ subset of PV+INTs. We also find that now dominant IS/NFS cells are prone to entering depolarization block, causing them to temporarily lose the ability to initiate action potentials and control network excitation, potentially promoting seizures. Finally, single-cell nuclear RNAsequencing of PV+INTs revealed several misregulated genes related to morphogenesis, cellular excitability, and synapse formation. *For correspondence: [email protected] Competing interests: The Introduction authors declare that no Excitation in neocortical and hippocampal circuits is balanced by a relatively small (10–15%) yet competing interests exist. -
Identification of a Novel PAFAH1B1 Missense Mutation As a Cause Of
Brain & Development xxx (2018) xxx–xxx www.elsevier.com/locate/braindev Original article Identification of a novel PAFAH1B1 missense mutation as a cause of mild lissencephaly with basal ganglia calcification Chang-he Shi a,1, Shuo Zhang a,b,1, Zhi-hua Yang a,1, Yu-sheng Li a, Yu-tao Liu a, Zhuo Li a, Zheng-wei Hu a,b, Yu-ming Xu a,⇑ a Department of Neurology, The First Affiliated Hospital of Zhengzhou University, Zhengzhou University, Zhengzhou, 450000 Henan, China b Academy of Medical Sciences, Zhengzhou University, Zhengzhou 450052, Henan, China Received 14 April 2018; received in revised form 8 July 2018; accepted 17 July 2018 Abstract Purpose: To investigate the genetic and clinical features of a Chinese family exhibiting an autosomal dominant inheritance pat- tern of lissencephaly. Methods: Clinical examinations and cranial imaging studies were performed for all members of the family (two unaffected mem- bers and three surviving members from a total of four affected members). In addition, whole-exome sequencing analysis was per- formed for DNA from an affected patient to scan for candidate mutations, followed by Sanger sequencing to verify these candidate mutations in the entire family. A total of 200 ethnicity-matched healthy controls without neuropsychiatric disorder were also included and analyzed. Results: We identified a novel missense mutation, c.412G > A, p.(E138K), that cosegregated with the disease in exon 6 of the platelet activating factor acetylhydrolase 1b regulatory subunit 1 (PAFAH1B1) gene in the affected members; this mutation was not found in the 200 controls. Multiple sequence alignments showed that codon 138, where the mutation (c.G412A) occurred, was located within a phylogenetically conserved region. -
A Genome-Wide Library of MADM Mice for Single-Cell Genetic Mosaic Analysis
bioRxiv preprint doi: https://doi.org/10.1101/2020.06.05.136192; this version posted June 6, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Contreras et al., A Genome-wide Library of MADM Mice for Single-Cell Genetic Mosaic Analysis Ximena Contreras1, Amarbayasgalan Davaatseren1, Nicole Amberg1, Andi H. Hansen1, Johanna Sonntag1, Lill Andersen2, Tina Bernthaler2, Anna Heger1, Randy Johnson3, Lindsay A. Schwarz4,5, Liqun Luo4, Thomas Rülicke2 & Simon Hippenmeyer1,6,# 1 Institute of Science and Technology Austria, Am Campus 1, 3400 Klosterneuburg, Austria 2 Institute of Laboratory Animal Science, University of Veterinary Medicine Vienna, Vienna, Austria 3 Department of Biochemistry and Molecular Biology, University of Texas, Houston, TX 77030, USA 4 HHMI and Department of Biology, Stanford University, Stanford, CA 94305, USA 5 Present address: St. Jude Children’s Research Hospital, Memphis, TN 38105, USA 6 Lead contact #Correspondence and requests for materials should be addressed to S.H. ([email protected]) 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.06.05.136192; this version posted June 6, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Contreras et al., SUMMARY Mosaic Analysis with Double Markers (MADM) offers a unique approach to visualize and concomitantly manipulate genetically-defined cells in mice with single-cell resolution. -
Activation of Aurora-A Is Essential for Neuronal Migration Via Modulation of Microtubule Organization
11050 • The Journal of Neuroscience, August 8, 2012 • 32(32):11050–11066 Cellular/Molecular Activation of Aurora-A Is Essential for Neuronal Migration via Modulation of Microtubule Organization Takako Takitoh,1 Kanako Kumamoto,1 Chen-Chi Wang,2,4 Makoto Sato,2,3,4 Shiori Toba,1 Anthony Wynshaw-Boris,5 and Shinji Hirotsune1 1Department of Genetic Disease Research, Osaka City University Graduate School of Medicine, Osaka 545-8585, Japan, 2Division of Cell Biology and Neuroscience, Department of Morphological and Physiological Sciences, Faculty of Medical Sciences, University of Fukui, 3Child Development Research Center, Graduate School of Medical Sciences, University of Fukui, 4Research and Education Program for Life Science, University of Fukui, Fukui 910-1193, Japan, and 5Department of Pediatrics and Institute for Human Genetics, University of California, San Francisco, School of Medicine, San Francisco, California 94143 Neuronal migration is a critical feature to ensure proper location and wiring of neurons during cortical development. Postmitotic neurons migrate from the ventricular zone into the cortical plate to establish neuronal lamina in an “inside-out” gradient of maturation. Here, we report that the mitotic kinase Aurora-A is critical for the regulation of microtubule organization during neuronal migration via an Aurora-A–NDEL1 pathway in the mouse. Suppression of Aurora-A activity by inhibitors or siRNA resulted in severe impairment of neuronal migration of granular neurons. In addition, in utero injection of the Aurora-A kinase-dead mutant provoked defective migra- tion of cortical neurons. Furthermore, we demonstrated that suppression of Aurora-A impaired microtubule modulation in migrating neurons. Interestingly, suppression of CDK5 by an inhibitor or siRNA reduced Aurora-A activity and NDEL1 phosphorylation by Aurora-A, which led to defective neuronal migration. -
PAFAH1B1 Antibody Cat
PAFAH1B1 Antibody Cat. No.: 45-104 PAFAH1B1 Antibody 45-104 (3.75ug/ml) staining of paraffin embedded Human 45-104 (3.75ug/ml) staining of paraffin embedded Human Thyroid. Steamed Cortex. Steamed antigen retrieval antigen retrieval with citrate buffer Ph 6, AP-staining. with citrate buffer pH 6, AP- staining. 45-104 (3.75ug/ml) staining of paraffin embedded Human Pancreas. Steamed antigen retrieval with citrate buffer Ph 6, AP-staining. Specifications HOST SPECIES: Goat September 25, 2021 1 https://www.prosci-inc.com/pafah1b1-antibody-45-104.html SPECIES REACTIVITY: Human, Rat IMMUNOGEN: The immunogen for this antibody is: TGSVDQTVKVWECR TESTED APPLICATIONS: ELISA, IHC, WB Peptide ELISA: antibody detection limit dilution 1:32000.Western Blot:Approx 40kDa band observed in Human Ovary and in Rat Ovary lysates (calculated MW of 46.6kDa APPLICATIONS: according to Human NP_000421.1 and to Rat NP_113951.1). Recommended concentration: 0.1-0.3ug/ml.Immunohistochemistry:Paraffin embedded Human Brain (Cortex), Thyroid and Pancreas. Recommended concentration: 3.75ug/ml. SPECIFICITY: #To_Delete#. POSITIVE CONTROL: 1) Cat. No. 21-468 - Rat Ovary Lysate Properties Purified from goat serum by ammonium sulphate precipitation followed by antigen PURIFICATION: affinity chromatography using the immunizing peptide. CLONALITY: Polyclonal CONJUGATE: Unconjugated PHYSICAL STATE: Liquid Supplied at 0.5 mg/ml in Tris saline, 0.02% sodium azide, pH7.3 with 0.5% bovine serum BUFFER: albumin. Aliquot and store at -20°C. Minimize freezing and thawing. CONCENTRATION: -
Forschungsbericht Science Report
FORSCHUNGSBERICHT SCIENCE REPORT2017/2018 ST. ANNA KINDERKREBSFORSCHUNG ST. ANNA CHILDREN’S CANCER RESEARCH INSTITUTE TUMOR BIOLOGY Understanding tumor heterogeneity and relapse in neuroblastoma patients to allow adequate treatment options. MOLECULAR MICROBIOLOGY LCH BIOLOGY Clinically important Targeted resistant mutations in Philadelphia inhibition chromosome-positive leukemias. of the MAPK pathway leads to a STUDIES & STATISTICS rapid and sustained clinical response in severe multisystem LCH. Busulfan and melphalan is considered standard high-dose chemotherapy for high-risk neuroblastoma. GENETICS OF LEUKEMIAS A novel genetic MOLECULAR BIOLOGY OF SOLID TUMORS subtype of leukemia. Understanding mechanisms EPIGENOME-BASED PRECISION MEDICINE of tumor cell plasticity EPIGENETIC and its role in diversity in Ewing sarcoma metastasis. Ewing sarcoma. MORE SCIENCE REPORTS INSIDE >>> [ 06 ] Forschungsbericht St. Anna Kinderkrebsforschung | Science Report St. Anna Children’s Cancer Research Institute Inhalt Einleitung Vorwort des Institutsleiters 10 Vorwort des wissenschaftlichen Direktors 12 30 Jahre – unseren Spendern sei Dank! 14 Daten & Fakten Kompetitive Drittmittel 2018 20 Zuweisung der Geldmittel 2018 20 Finanzierung 2018 20 Nationen 21 Personelle Zusammensetzung 21 PatientInnenaufkommen im S2IRP 22 2-Jahres-Überlebensrate krebskranker Kinder 23 5-Jahres-Überlebensrate krebskranker Kinder 24 Forschungsnetzwerke 26 Inhalt Forschungsbericht I St. Anna Kinderkrebsforschung | Science Report St. Anna Cancer Research Institute [ 07 ] Science -
Lis1 and Ndel1 Influence the Timing of Nuclear Envelope Breakdown in Neural Stem Cells
University of South Carolina Scholar Commons Faculty Publications Biological Sciences, Department of 9-22-2008 Lis1 and Ndel1 Influence the Timing of Nuclear Envelope Breakdown in Neural Stem Cells Sachin Hebbar University of South Carolina - Columbia Mariano T. Mesngon University of South Carolina - Columbia Aimee M. Guillotte University of South Carolina - Columbia Bhavim Desai University of South Carolina - Columbia, [email protected] Ramses Ayala Mass General Institute for Neurodegenerative Disease See next page for additional authors Follow this and additional works at: https://scholarcommons.sc.edu/biol_facpub Part of the Biology Commons Publication Info The Journal of Cell Biology, Volume 182, Issue 6, 2008, pages 1063-1071. © 2008, the authors. Originally published in the Journal of Cell Biology by the Rockefeller University Press. This Article is brought to you by the Biological Sciences, Department of at Scholar Commons. It has been accepted for inclusion in Faculty Publications by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. Author(s) Sachin Hebbar, Mariano T. Mesngon, Aimee M. Guillotte, Bhavim Desai, Ramses Ayala, and Deanna S. Smith This article is available at Scholar Commons: https://scholarcommons.sc.edu/biol_facpub/58 Published September 22, 2008 JCB: REPORT Lis1 and Ndel1 infl uence the timing of nuclear envelope breakdown in neural stem cells Sachin Hebbar , 1 Mariano T. Mesngon , 1 Aimee M. Guillotte , 1 Bhavim Desai , 1 Ramses Ayala , 2 and Deanna S. Smith 1 1 Department of Biological Sciences, University of South Carolina, Columbia, SC 29208 2 Neurology Department, Mass General Institute for Neurodegenerative Disease, Charlestown, MA 02120 is1 and Ndel1 are essential for animal development. -
Current Treatment of Juvenile Myelomonocytic Leukemia
Journal of Clinical Medicine Review Current Treatment of Juvenile Myelomonocytic Leukemia Christina Mayerhofer 1 , Charlotte M. Niemeyer 1,2 and Christian Flotho 1,2,* 1 Division of Pediatric Hematology and Oncology, Department of Pediatrics and Adolescent Medicine, Medical Center, Faculty of Medicine, University of Freiburg, 79106 Freiburg, Germany; [email protected] (C.M.); [email protected] (C.M.N.) 2 German Cancer Consortium (DKTK), 79106 Freiburg, Germany * Correspondence: christian.fl[email protected] Abstract: Juvenile myelomonocytic leukemia (JMML) is a rare pediatric leukemia characterized by mutations in five canonical RAS pathway genes. The diagnosis is made by typical clinical and hematological findings associated with a compatible mutation. Although this is sufficient for clinical decision-making in most JMML cases, more in-depth analysis can include DNA methylation class and panel sequencing analysis for secondary mutations. NRAS-initiated JMML is heterogeneous and adequate management ranges from watchful waiting to allogeneic hematopoietic stem cell transplan- tation (HSCT). Upfront azacitidine in KRAS patients can achieve long-term remissions without HSCT; if HSCT is required, a less toxic preparative regimen is recommended. Germline CBL patients often experience spontaneous resolution of the leukemia or exhibit stable mixed chimerism after HSCT. JMML driven by PTPN11 or NF1 is often rapidly progressive, requires swift HSCT and may benefit from pretransplant therapy with azacitidine. Because graft-versus-leukemia alloimmunity is central to cure high risk patients, the immunosuppressive regimen should be discontinued early after HSCT. Keywords: juvenile myelomonocytic leukemia; RAS signaling; hematopoietic stem cell transplantation; 5-azacitidine; myelodysplastic/myeloproliferative disorders; targeted therapy Citation: Mayerhofer, C.; Niemeyer, C.M.; Flotho, C. -
CRL5-Dependent Regulation of the Small Gtpases ARL4C and ARF6 Controls Hippocampal Morphogenesis
CRL5-dependent regulation of the small GTPases ARL4C and ARF6 controls hippocampal morphogenesis Jisoo S. Hana,1, Keiko Hinoa,1, Wenzhe Lia, Raenier V. Reyesa, Cesar P. Canalesa,2, Adam M. Miltnera, Yasmin Haddadia, Junqing Sunb, Chao-Yin Chenb, Anna La Torrea, and Sergi Simóa,3 aDepartment of Cell Biology and Human Anatomy, University of California, Davis, CA 95616; and bDepartment of Pharmacology, University of California, Davis, CA 95616 Edited by Mary E. Hatten, Rockefeller University, New York, NY, and approved August 3, 2020 (received for review February 14, 2020) The small GTPase ARL4C participates in the regulation of cell migra- Importantly, CRL5 substrate adaptors are dynamically regulated tion, cytoskeletal rearrangements, and vesicular trafficking in epithe- during development, directing CRL5 activity to specific substrates lial cells. The ARL4C signaling cascade starts by the recruitment of the at different times and areas in the CNS (19). In the neocortex, ARF–GEF cytohesins to the plasma membrane, which, in turn, bind CRL5 opposes projection neuron migration by down-regulating and activate the small GTPase ARF6. However, the role of ARL4C– the Reelin/DAB1 signaling pathway as migrating projection neu- cytohesin–ARF6 signaling during hippocampal development remains rons reach the top of the cortical plate (18, 20, 21). In the CNS, elusive. Here, we report that the E3 ubiquitin ligase Cullin 5/RBX2 Reelin/DAB1 signaling participates in several developmental (CRL5) controls the stability of ARL4C and its signaling effectors to processes, including neuron migration, dendritogenesis, axo- regulate hippocampal morphogenesis. Both RBX2 knockout and genesis, and synaptogenesis (22–24). Moreover, CRL5 also con- Cullin 5 knockdown cause hippocampal pyramidal neuron mislocali- trols levels of the tyrosine kinase FYN, which exerts important zation and development of multiple apical dendrites. -
Doublecortin Is Required in Mice for Lamination of the Hippocampus but Not the Neocortex
The Journal of Neuroscience, September 1, 2002, 22(17):7548–7557 Doublecortin Is Required in Mice for Lamination of the Hippocampus But Not the Neocortex Joseph C. Corbo,1,2 Thomas A. Deuel,1 Jeffrey M. Long,3 Patricia LaPorte,3 Elena Tsai,1 Anthony Wynshaw-Boris,3 and Christopher A. Walsh1 1Department of Neurology, Beth Israel Deaconess Medical Center, and Programs in Neuroscience and Biological and Biomedical Sciences, Harvard Medical School, Boston, Massachusetts 02115, 2Department of Pathology, Brigham and Women’s Hospital, Boston, Massachusetts 02115, and 3Departments of Pediatrics and Medicine, University of California, San Diego School of Medicine, San Diego, California 92093 Doublecortin (DCX) is a microtubule-associated protein that is cal lamination that is largely indistinguishable from wild type required for normal neocortical and hippocampal development and show normal patterns of neocortical neurogenesis and in humans. Mutations in the X-linked human DCX gene cause neuronal migration. In contrast, the hippocampus of both het- gross neocortical disorganization (lissencephaly or “smooth erozygous females and hemizygous males shows disrupted brain”) in hemizygous males, whereas heterozygous females lamination that is most severe in the CA3 region. Behavioral show a mosaic phenotype with a normal cortex as well as a tests show defects in context and cued conditioned fear tests, second band of misplaced (heterotopic) neurons beneath the suggesting that deficits in hippocampal learning accompany cortex (“double cortex syndrome”). We created a mouse carry- the abnormal cytoarchitecture. ing a targeted mutation in the Dcx gene. Hemizygous male Dcx mice show severe postnatal lethality; the few that survive to Key words: doublecortin; knock-out; mouse; cerebral cortex; adulthood are variably fertile. -
N-Acetyl-D-Glucosamine Kinase Interacts with Nudc and Lis1 in Dynein Motor Complex and Promotes Cell Migration
International Journal of Molecular Sciences Article N-Acetyl-D-Glucosamine Kinase Interacts with NudC and Lis1 in Dynein Motor Complex and Promotes Cell Migration Md. Ariful Islam 1,†, Ho Jin Choi 1, Raju Dash 1 , Syeda Ridita Sharif 1,‡, Diyah Fatimah Oktaviani 1 , Dae-Hyun Seog 2 and Il Soo Moon 1,3,* 1 Department of Anatomy, Dongguk University College of Medicine, Gyeongju 38066, Korea; [email protected] (M.A.I.); [email protected] (H.J.C.); [email protected] (R.D.); [email protected] (S.R.S.); [email protected] (D.F.O.) 2 Department of Biochemistry, Dementia and Neurodegenerative Disease Research Center, Inje University College of Medicine, Busan 47392, Korea; [email protected] 3 Dongguk Medical Institute, Dongguk University College of Medicine, Gyeongju 38066, Korea * Correspondence: [email protected]; Tel.: +82-54-770-2414; Fax: +82-54-770-2447 † Current address: Departments of Biological Sciences & Brain and Cognitive Sciences, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul 08826, Korea. ‡ Current address: Department of Pharmacy, University of Science and Technology Chittagong, Chittagong 4202, Bangladesh. Abstract: Recently, we showed that N-acetylglucosamine kinase (NAGK), an enzyme of amino sugar metabolism, interacts with dynein light chain roadblock type 1 (DYNLRB1) and promotes the functions of dynein motor. Here, we report that NAGK interacts with nuclear distribution protein C (NudC) and lissencephaly 1 (Lis1) in the dynein complex. Yeast two-hybrid assays, pull-down assays, immunocy- tochemistry, and proximity ligation assays revealed NAGK–NudC–Lis1–dynein complexes around nuclei, at the leading poles of migrating HEK293T cells, and at the tips of migratory processes of cultured rat neuroblast cells.