Doublecortin Is Required in Mice for Lamination of the Hippocampus but Not the Neocortex
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PROTEOMIC ANALYSIS of HUMAN URINARY EXOSOMES. Patricia
ABSTRACT Title of Document: PROTEOMIC ANALYSIS OF HUMAN URINARY EXOSOMES. Patricia Amalia Gonzales Mancilla, Ph.D., 2009 Directed By: Associate Professor Nam Sun Wang, Department of Chemical and Biomolecular Engineering Exosomes originate as the internal vesicles of multivesicular bodies (MVBs) in cells. These small vesicles (40-100 nm) have been shown to be secreted by most cell types throughout the body. In the kidney, urinary exosomes are released to the urine by fusion of the outer membrane of the MVBs with the apical plasma membrane of renal tubular epithelia. Exosomes contain apical membrane and cytosolic proteins and can be isolated using differential centrifugation. The analysis of urinary exosomes provides a non- invasive means of acquiring information about the physiological or pathophysiological state of renal cells. The overall objective of this research was to develop methods and knowledge infrastructure for urinary proteomics. We proposed to conduct a proteomic analysis of human urinary exosomes. The first objective was to profile the proteome of human urinary exosomes using liquid chromatography-tandem spectrometry (LC- MS/MS) and specialized software for identification of peptide sequences from fragmentation spectra. We unambiguously identified 1132 proteins. In addition, the phosphoproteome of human urinary exosomes was profiled using the neutral loss scanning acquisition mode of LC-MS/MS. The phosphoproteomic profiling identified 19 phosphorylation sites corresponding to 14 phosphoproteins. The second objective was to analyze urinary exosomes samples isolated from patients with genetic mutations. Polyclonal antibodies were generated to recognize epitopes on the gene products of these genetic mutations, NKCC2 and MRP4. The potential usefulness of urinary exosome analysis was demonstrated using the well-defined renal tubulopathy, Bartter syndrome type I and using the single nucleotide polymorphism in the ABCC4 gene. -
Genotype-Phenotype Correlations in RP1-Associated Retinal Dystrophies: a Multi-Center Cohort Study in JAPAN
Journal of Clinical Medicine Article Genotype-Phenotype Correlations in RP1-Associated Retinal Dystrophies: A Multi-Center Cohort Study in JAPAN Kei Mizobuchi 1,* , Takaaki Hayashi 1,2 , Noriko Oishi 3, Daiki Kubota 3, Shuhei Kameya 3, Koichiro Higasa 4, Takuma Futami 5, Hiroyuki Kondo 5 , Katsuhiro Hosono 6, Kentaro Kurata 6, Yoshihiro Hotta 6 , Kazutoshi Yoshitake 7, Takeshi Iwata 7 , Tomokazu Matsuura 8 and Tadashi Nakano 1 1 Department of Ophthalmology, The Jikei University School of Medicine, 3-19-18, Nishi-shimbashi, Minato-ku, Tokyo 105-8471, Japan; [email protected] (T.H.); [email protected] (T.N.) 2 Department of Ophthalmology, Katsushika Medical Center, The Jikei University School of Medicine, 6-41-2 Aoto, Katsushika-ku, Tokyo 125-8506, Japan 3 Department of Ophthalmology, Nippon Medical School Chiba Hokusoh Hospital, 1715 Kamagari, Inzai, Chiba 270-1694, Japan; [email protected] (N.O.); [email protected] (D.K.); [email protected] (S.K.) 4 Department of Genome Analysis, Institute of Biomedical Science, Kansai Medical University, 2-5-1 Shinmachi, Hirakata, Osaka 573-1010, Japan; [email protected] 5 Department of Ophthalmology, University of Occupational and Environmental Health, 1-1, Iseigaoka, Yahatanishi-ku Kitakyushu-shi, Fu-kuoka 807-8555, Japan; [email protected] (T.F.); [email protected] (H.K.) 6 Department of Ophthalmology, Hamamatsu University School of Medicine, 1-20-1, Handayama, Higashi-ku, Shizuoka, Hamamatsu 431-3192, Japan; [email protected] (K.H.); [email protected] (K.K.); [email protected] (Y.H.) 7 Citation: Mizobuchi, K.; Hayashi, T.; National Institute of Sensory Organs, National Hospital Organization Tokyo Medical Center, Oishi, N.; Kubota, D.; Kameya, S.; 2-5-1 Higashigaoka, Meguro-ku, Tokyo 152-8902, Japan; [email protected] (K.Y.); [email protected] (T.I.) Higasa, K.; Futami, T.; Kondo, H.; 8 Department of Laboratory Medicine, The Jikei University School of Medicine, 3-19-18, Nishi-shimbashi, Hosono, K.; Kurata, K.; et al. -
Mechanisms and Disturbances of Neuronal Migration the Developing Nervous System: a Series of Review Articles
0031-3998/00/4806-0725 PEDIATRIC RESEARCH Vol. 48, No. 6, 2000 Copyright © 2000 International Pediatric Research Foundation, Inc. Printed in U.S.A. The Developing Nervous System: A Series of Review Articles The following article is the first in an important series of review articles which discuss the developmental biology of the nervous system and its relation to diseases and disorders that are found in new born infants and children. This review, by Pierre Gressens, describes neuronal migration in the developing brain and abnormalities in humans resulting from aberrations in neuronal migration. Alvin Zipursky Editor-in-Chief Mechanisms and Disturbances of Neuronal Migration PIERRE GRESSENS Service de Neurologie Pédiatrique and INSERM E 9935, Hôpital Robert-Debré, F-75019 Paris, France ABSTRACT Neuronal migration appears as a complex ontogenic step of migration of neurons destined to the neocortex. New insights occurring early during embryonic and fetal development. Control gained from the analysis of animal models as well as from the of neuronal migration involves different cell populations includ- study of human diseases will be included. (Pediatr Res 48: ing Cajal-Retzius neurons, subplate neurons, neuronal precursors 725–730, 2000) or radial glia. The integrity of multiple molecular mechanisms, such as cell cycle control, cell-cell adhesion, interaction with extracellular matrix protein, neurotransmitter release, growth Abbreviations: factor availability, platelet-activating factor degradation or trans- BDNF, brain-derived neurotrophic factor duction pathways seems to be critical for normal neuronal mi- EGF, epidermal growth factor gration. The complexity and the multiplicity of these mecha- NMDA, N-methyl-D-aspartate nisms probably explain the clinical, radiologic and genetic NT, neurotrophin heterogeneity of human disorders of neuronal migration. -
Containing Interneurons in Hippocampus of a Murine
RESEARCH ARTICLE Emergence of non-canonical parvalbumin- containing interneurons in hippocampus of a murine model of type I lissencephaly Tyler G Ekins1,2, Vivek Mahadevan1, Yajun Zhang1, James A D’Amour1,3, Gu¨ lcan Akgu¨ l1, Timothy J Petros1, Chris J McBain1* 1Program in Developmental Neurobiology, Eunice Kennedy-Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, United States; 2NIH-Brown University Graduate Partnership Program, Providence, United States; 3Postdoctoral Research Associate Training Program, National Institute of General Medical Sciences, Bethesda, United States Abstract Type I lissencephaly is a neuronal migration disorder caused by haploinsuffiency of the PAFAH1B1 (mouse: Pafah1b1) gene and is characterized by brain malformation, developmental delays, and epilepsy. Here, we investigate the impact of Pafah1b1 mutation on the cellular migration, morphophysiology, microcircuitry, and transcriptomics of mouse hippocampal CA1 parvalbumin-containing inhibitory interneurons (PV+INTs). We find that WT PV+INTs consist of two physiological subtypes (80% fast-spiking (FS), 20% non-fast-spiking (NFS)) and four morphological subtypes. We find that cell-autonomous mutations within interneurons disrupts morphophysiological development of PV+INTs and results in the emergence of a non-canonical ‘intermediate spiking (IS)’ subset of PV+INTs. We also find that now dominant IS/NFS cells are prone to entering depolarization block, causing them to temporarily lose the ability to initiate action potentials and control network excitation, potentially promoting seizures. Finally, single-cell nuclear RNAsequencing of PV+INTs revealed several misregulated genes related to morphogenesis, cellular excitability, and synapse formation. *For correspondence: [email protected] Competing interests: The Introduction authors declare that no Excitation in neocortical and hippocampal circuits is balanced by a relatively small (10–15%) yet competing interests exist. -
Identification of a Novel PAFAH1B1 Missense Mutation As a Cause Of
Brain & Development xxx (2018) xxx–xxx www.elsevier.com/locate/braindev Original article Identification of a novel PAFAH1B1 missense mutation as a cause of mild lissencephaly with basal ganglia calcification Chang-he Shi a,1, Shuo Zhang a,b,1, Zhi-hua Yang a,1, Yu-sheng Li a, Yu-tao Liu a, Zhuo Li a, Zheng-wei Hu a,b, Yu-ming Xu a,⇑ a Department of Neurology, The First Affiliated Hospital of Zhengzhou University, Zhengzhou University, Zhengzhou, 450000 Henan, China b Academy of Medical Sciences, Zhengzhou University, Zhengzhou 450052, Henan, China Received 14 April 2018; received in revised form 8 July 2018; accepted 17 July 2018 Abstract Purpose: To investigate the genetic and clinical features of a Chinese family exhibiting an autosomal dominant inheritance pat- tern of lissencephaly. Methods: Clinical examinations and cranial imaging studies were performed for all members of the family (two unaffected mem- bers and three surviving members from a total of four affected members). In addition, whole-exome sequencing analysis was per- formed for DNA from an affected patient to scan for candidate mutations, followed by Sanger sequencing to verify these candidate mutations in the entire family. A total of 200 ethnicity-matched healthy controls without neuropsychiatric disorder were also included and analyzed. Results: We identified a novel missense mutation, c.412G > A, p.(E138K), that cosegregated with the disease in exon 6 of the platelet activating factor acetylhydrolase 1b regulatory subunit 1 (PAFAH1B1) gene in the affected members; this mutation was not found in the 200 controls. Multiple sequence alignments showed that codon 138, where the mutation (c.G412A) occurred, was located within a phylogenetically conserved region. -
Doublecortin (Dcx) Family Proteins Regulate Filamentous Actin Structure in Developing Neurons
The Journal of Neuroscience, January 9, 2013 • 33(2):709–721 • 709 Cellular/Molecular Doublecortin (Dcx) Family Proteins Regulate Filamentous Actin Structure in Developing Neurons Xiaoqin Fu,1 Kristy J. Brown,2 Chan Choo Yap,3 Bettina Winckler,3 Jyoti K. Jaiswal,2 and Judy S. Liu1 1Center for Neuroscience Research and 2Center for Genetic Medicine Research, Children’s National Medical Center, Washington, DC 20010, and 3Department of Neuroscience, University of Virginia Medical School, Charlottesville, Virginia 22908 Doublecortin (Dcx) is the causative gene for X-linked lissencephaly, which encodes a microtubule-binding protein. Axon tracts are abnormal in both affected individuals and in animal models. To determine the reason for the axon tract defect, we performed a semi- quantitative proteomic analysis of the corpus callosum in mice mutant for Dcx. In axons from mice mutant for Dcx, widespread differ- ences are found in actin-associated proteins as compared with wild-type axons. Decreases in actin-binding proteins ␣-actinin-1 and ␣-actinin-4 and actin-related protein 2/3 complex subunit 3 (Arp3), are correlated with dysregulation in the distribution of filamentous actin (F-actin) in the mutant neurons with increased F-actin around the cell body and decreased F-actin in the neurites and growth cones. The actin distribution defect can be rescued by full-length Dcx and further enhanced by Dcx S297A, the unphosphorylatable mutant, but not with the truncation mutant of Dcx missing the C-terminal S/P-rich domain. Thus, the C-terminal region of Dcx dynamically regulates formation of F-actin features in developing neurons, likely through interaction with spinophilin, but not through ␣-actinin-4 or Arp3. -
Genetic Mosaic Dissection of Lis1 and Ndel1 in Neuronal Migration
Neuron Article Genetic Mosaic Dissection of Lis1 and Ndel1 in Neuronal Migration Simon Hippenmeyer,1,* Yong Ha Youn,2 Hyang Mi Moon,2,3 Kazunari Miyamichi,1 Hui Zong,1,5 Anthony Wynshaw-Boris,2,4 and Liqun Luo1,* 1Howard Hughes Medical Institute and Department of Biology, Stanford University, Stanford, CA 94305, USA 2Department of Pediatrics and Institute for Human Genetics 3Biomedical Sciences Graduate Program 4Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research University of California, San Francisco School of Medicine, San Francisco, CA 94143, USA 5Institute of Molecular Biology, University of Oregon, Eugene, OR 97403, USA *Correspondence: [email protected] (S.H.), [email protected] (L.L.) DOI 10.1016/j.neuron.2010.09.027 SUMMARY studied. Cortical layering occurs in an ‘‘inside-out’’ fashion whereby earlier born neurons occupy deep layers and succes- Coordinated migration of newly born neurons to their sively later born neurons settle in progressively upper layers (An- prospective target laminae is a prerequisite for neural gevine and Sidman, 1961; Rakic, 1974). Upon radial glia progen- circuit assembly in the developing brain. The evolu- itor cell (RGPC)-mediated neurogenesis, newborn migrating tionarily conserved LIS1/NDEL1 complex is essential cortical projection neurons are bipolar-shaped in the ventricular for neuronal migration in the mammalian cerebral zone (VZ) but then convert to a multipolar morphology within the cortex. The cytoplasmic nature of LIS1 and NDEL1 subventricular zone (SVZ) and migrate into the intermediate zone (IZ). A switch from the multipolar state back to a bipolar proteins suggest that they regulate neuronal migra- morphology precedes radial glia-guided locomotion of projec- tion cell autonomously. -
PAFAH1B1 Antibody Cat
PAFAH1B1 Antibody Cat. No.: 45-104 PAFAH1B1 Antibody 45-104 (3.75ug/ml) staining of paraffin embedded Human 45-104 (3.75ug/ml) staining of paraffin embedded Human Thyroid. Steamed Cortex. Steamed antigen retrieval antigen retrieval with citrate buffer Ph 6, AP-staining. with citrate buffer pH 6, AP- staining. 45-104 (3.75ug/ml) staining of paraffin embedded Human Pancreas. Steamed antigen retrieval with citrate buffer Ph 6, AP-staining. Specifications HOST SPECIES: Goat September 25, 2021 1 https://www.prosci-inc.com/pafah1b1-antibody-45-104.html SPECIES REACTIVITY: Human, Rat IMMUNOGEN: The immunogen for this antibody is: TGSVDQTVKVWECR TESTED APPLICATIONS: ELISA, IHC, WB Peptide ELISA: antibody detection limit dilution 1:32000.Western Blot:Approx 40kDa band observed in Human Ovary and in Rat Ovary lysates (calculated MW of 46.6kDa APPLICATIONS: according to Human NP_000421.1 and to Rat NP_113951.1). Recommended concentration: 0.1-0.3ug/ml.Immunohistochemistry:Paraffin embedded Human Brain (Cortex), Thyroid and Pancreas. Recommended concentration: 3.75ug/ml. SPECIFICITY: #To_Delete#. POSITIVE CONTROL: 1) Cat. No. 21-468 - Rat Ovary Lysate Properties Purified from goat serum by ammonium sulphate precipitation followed by antigen PURIFICATION: affinity chromatography using the immunizing peptide. CLONALITY: Polyclonal CONJUGATE: Unconjugated PHYSICAL STATE: Liquid Supplied at 0.5 mg/ml in Tris saline, 0.02% sodium azide, pH7.3 with 0.5% bovine serum BUFFER: albumin. Aliquot and store at -20°C. Minimize freezing and thawing. CONCENTRATION: -
The Retinitis Pigmentosa 1 Protein Is a Photoreceptor Microtubule-Associated Protein
The Journal of Neuroscience, July 21, 2004 • 24(29):6427–6436 • 6427 Neurobiology of Disease The Retinitis Pigmentosa 1 Protein Is a Photoreceptor Microtubule-Associated Protein Qin Liu,1 Jian Zuo,2 and Eric A. Pierce1 1F. M. Kirby Center for Molecular Ophthalmology, Scheie Eye Institute, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania 19104, and 2Department of Developmental Neurobiology, St. Jude Children’s Research Hospital, Memphis, Tennessee 38105 The outer segments of rod and cone photoreceptor cells are highly specialized sensory cilia made up of hundreds of membrane discs stacked into an orderly array along the photoreceptor axoneme. It is not known how the alignment of the outer segment discs is controlled, although it has been suggested that the axoneme may play a role in this process. Mutations in the retinitis pigmentosa 1 (RP1) gene are a common cause of retinitis pigmentosa (RP). Disruption of the Rp1 gene in mice causes misorientation of outer segment discs, suggesting a role for RP1 in outer segment organization. Here, we show that the RP1 protein is part of the photoreceptor axoneme. Amino acids 28–228 of RP1, which share limited homology with the microtubule-binding domains of the neuronal microtubule-associated protein (MAP) doublecortin, mediate the interaction between RP1 and microtubules, indicating that the putative doublecortin (DCX) domains in RP1 are functional. The N-terminal portion of RP1 stimulates the formation of microtubules in vitro and stabilizes cytoplas- mic microtubules in heterologous cells. Evaluation of photoreceptor axonemes from mice with targeted disruptions of the Rp1 gene shows that Rp1 proteins that contain the DCX domains also help control axoneme length and stability in vivo. -
N-Acetyl-D-Glucosamine Kinase Interacts with Nudc and Lis1 in Dynein Motor Complex and Promotes Cell Migration
International Journal of Molecular Sciences Article N-Acetyl-D-Glucosamine Kinase Interacts with NudC and Lis1 in Dynein Motor Complex and Promotes Cell Migration Md. Ariful Islam 1,†, Ho Jin Choi 1, Raju Dash 1 , Syeda Ridita Sharif 1,‡, Diyah Fatimah Oktaviani 1 , Dae-Hyun Seog 2 and Il Soo Moon 1,3,* 1 Department of Anatomy, Dongguk University College of Medicine, Gyeongju 38066, Korea; [email protected] (M.A.I.); [email protected] (H.J.C.); [email protected] (R.D.); [email protected] (S.R.S.); [email protected] (D.F.O.) 2 Department of Biochemistry, Dementia and Neurodegenerative Disease Research Center, Inje University College of Medicine, Busan 47392, Korea; [email protected] 3 Dongguk Medical Institute, Dongguk University College of Medicine, Gyeongju 38066, Korea * Correspondence: [email protected]; Tel.: +82-54-770-2414; Fax: +82-54-770-2447 † Current address: Departments of Biological Sciences & Brain and Cognitive Sciences, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul 08826, Korea. ‡ Current address: Department of Pharmacy, University of Science and Technology Chittagong, Chittagong 4202, Bangladesh. Abstract: Recently, we showed that N-acetylglucosamine kinase (NAGK), an enzyme of amino sugar metabolism, interacts with dynein light chain roadblock type 1 (DYNLRB1) and promotes the functions of dynein motor. Here, we report that NAGK interacts with nuclear distribution protein C (NudC) and lissencephaly 1 (Lis1) in the dynein complex. Yeast two-hybrid assays, pull-down assays, immunocy- tochemistry, and proximity ligation assays revealed NAGK–NudC–Lis1–dynein complexes around nuclei, at the leading poles of migrating HEK293T cells, and at the tips of migratory processes of cultured rat neuroblast cells. -
Neuronal Migration Genes and a Familial Translocation T (3;17)
Hadj Amor et al. BMC Medical Genetics (2020) 21:26 https://doi.org/10.1186/s12881-020-0966-9 RESEARCH ARTICLE Open Access Neuronal migration genes and a familial translocation t (3;17): candidate genes implicated in the phenotype Meriam Hadj Amor1,2, Sarra Dimassi1,3, Amel Taj4, Wafa Slimani1,2, Hanene Hannachi1, Adnene Mlika4, Khaled Ben Helel5, Ali Saad1,3 and Soumaya Mougou-Zerelli1,3* Abstract Background: While Miller-Dieker syndrome critical region deletions are well known delineated anomalies, submicroscopic duplications in this region have recently emerged as a new distinctive syndrome. So far, only few cases have been described overlapping 17p13.3 duplications. Methods: In this study, we report on clinical and cytogenetic characterization of two new cases involving 17p13.3 and 3p26 chromosomal regions in two sisters with familial history of lissencephaly. Fluorescent In Situ Hybridization and array Comparative Genomic Hybridization were performed. Results: A deletion including the critical region of the Miller-Dieker syndrome of at least 2,9 Mb and a duplication of at least 3,6 Mb on the short arm of chromosome 3 were highlighted in one case. The opposite rearrangements, 17p13.3 duplication and 3p deletion, were observed in the second case. This double chromosomal aberration is the result of an adjacent 1:1 meiotic segregation of a maternal reciprocal translocation t(3,17)(p26.2;p13.3). Conclusions: 17p13.3 and 3p26 deletions have a clear range of phenotypic features while duplications still have an uncertain clinical significance. However, we could suggest that regardless of the type of the rearrangement, the gene dosage and interactions of CNTN4, CNTN6 and CHL1 in the 3p26 and PAFAH1B1, YWHAE in 17p13.3 could result in different clinical spectrums. -
Alteration of PAFAH1B1 in Human Lung Cancer and Its Roles in Tumor Progression and Poor Survival
BioFormosa(2010)45(2): 63-69 Alteration of PAFAH1B1 in Human Lung Cancer and Its Roles in Tumor Progression and Poor Survival Fang-Yi Lo1,2, Hsiung-Ting Chen2, Han-Shui Hsu3,4, Tsu-Wei Wang1*, Guey-Jen Lee-Chen1* Yi-Ching Wang2,5* 1Department of Life Science, National Taiwan Normal University Taipei, Taiwan 2Department of Pharmacology, College of Medicine, National Cheng Kung University Tainan, Taiwan 3Institute of Emergency and Critical Care Medicine, National Yang Ming University Taipei, Taiwan 4Division of Thoracic Surgery, Taipei Veterans General Hospital Taipei, Taiwan 5Institute of Basic Medical Science, College of Medicine, National Cheng Kung University Tainan, Taiwan. (Received: 7 April 2011, accepted: 6 May 2011) ABSTRACT Rationale and Objectives: Genomic DNA copy number variation is a hallmark of cancer. In our previous array-comparative genomic hybridization (array-CGH) study, we showed that PAFAH1B1 was amplified in lung cancer patients, suggesting that PAFAH1B1 is a potential oncogene in lung cancer. Methods: In this study, we have determined the mRNA and protein expression level of PAFAH1B1 in 91 lung cancer patients using quantitative reverse transcription polymerase chain reaction (qRT-PCR) and immunohistochemistry (IHC). Main Results: The PAFAH1B1 mRNA and protein overexpression frequency were 61.5% (56/91) and 56% (51/91) in lung cancer patients. The results indicated that mRNA and protein overexpression level of PAFAH1B1 was significantly associated with late stage (mRNA: P=0.001, protein: P=0.05) and poor survival in lung adenocarcinoma (P=0.049). Conclusions: The results revealed the roles of overexpressed PAFAH1B1 in tumor progression and poor survival in lung cancer.