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Dean Oz/Μ: ;Z: Date
The evolutionary history of reproductive strategies in sculpins of the subfamily oligocottinae Item Type Thesis Authors Buser, Thaddaeus J. Download date 26/09/2021 18:39:58 Link to Item http://hdl.handle.net/11122/4549 THE EVOLUTIONARY HISTORY OF REPRODUCTIVE STRATEGIES IN SCULPINS OF THE SUBFAMILY OLIGOCOTTINAE By Thaddaeus J. Buser RECOMMENDED: Dr. Anne Beaudreau Dr. J. Andres Lopez Advisory Committee Chair Dr. Shannon Atkinson Fisheries Division Graduate Program Chair APPROVED: Dr. Michael Castellini ·. John Eichel erger Dean oZ/µ:_;z: Date THE EVOLUTIONARY HISTORY OF REPRODUCTIVE STRATEGIES IN SCULPINS OF THE SUBFAMILY OLIGOCOTTINAE A THESIS Presented to the Faculty of the University of Alaska Fairbanks in Partial Fulfillment of the Requirements for the Degree of Title Page MASTER OF SCIENCE By Thaddaeus J. Buser, B.Sc. Fairbanks, Alaska May 2014 v Abstract The sculpin subfamily Oligocottinae is a group of 17 nearshore species and is noteworthy for the fact that it contains both intertidal and subtidal species, copulating and non- copulating species, and many species with very broad geographic ranges. These factors, as well as the consistency with which the constituent genera have been grouped together historically, make the Oligocottinae an ideal group for the study of the evolution of a reproductive mode known as internal gamete association (IGA), which is unique to sculpins. I conducted a phylogenetic study of the oligocottine sculpins based on an extensive molecular dataset consisting of DNA sequences from eight genomic regions. From the variability present in those sequences, I inferred phylogenetic relationships using parsimony, maximum likelihood, and Bayesian inference. Results of these phylogenetic analyses show that some historical taxonomy and classifications require revision to align taxonomy with evolutionary relatedness. -
Full Document (Pdf 2154
White Paper Research Project T1803, Task 35 Overwater Whitepaper OVERWATER STRUCTURES: MARINE ISSUES by Barbara Nightingale Charles A. Simenstad Research Assistant Senior Fisheries Biologist School of Marine Affairs School of Aquatic and Fishery Sciences University of Washington Seattle, Washington 98195 Washington State Transportation Center (TRAC) University of Washington, Box 354802 University District Building 1107 NE 45th Street, Suite 535 Seattle, Washington 98105-4631 Washington State Department of Transportation Technical Monitor Patricia Lynch Regulatory and Compliance Program Manager, Environmental Affairs Prepared for Washington State Transportation Commission Department of Transportation and in cooperation with U.S. Department of Transportation Federal Highway Administration May 2001 WHITE PAPER Overwater Structures: Marine Issues Submitted to Washington Department of Fish and Wildlife Washington Department of Ecology Washington Department of Transportation Prepared by Barbara Nightingale and Charles Simenstad University of Washington Wetland Ecosystem Team School of Aquatic and Fishery Sciences May 9, 2001 Note: Some pages in this document have been purposefully skipped or blank pages inserted so that this document will copy correctly when duplexed. TECHNICAL REPORT STANDARD TITLE PAGE 1. REPORT NO. 2. GOVERNMENT ACCESSION NO. 3. RECIPIENT'S CATALOG NO. WA-RD 508.1 4. TITLE AND SUBTITLE 5. REPORT DATE Overwater Structures: Marine Issues May 2001 6. PERFORMING ORGANIZATION CODE 7. AUTHOR(S) 8. PERFORMING ORGANIZATION REPORT NO. Barbara Nightingale, Charles Simenstad 9. PERFORMING ORGANIZATION NAME AND ADDRESS 10. WORK UNIT NO. Washington State Transportation Center (TRAC) University of Washington, Box 354802 11. CONTRACT OR GRANT NO. University District Building; 1107 NE 45th Street, Suite 535 Agreement T1803, Task 35 Seattle, Washington 98105-4631 12. -
Humboldt Bay Fishes
Humboldt Bay Fishes ><((((º>`·._ .·´¯`·. _ .·´¯`·. ><((((º> ·´¯`·._.·´¯`·.. ><((((º>`·._ .·´¯`·. _ .·´¯`·. ><((((º> Acknowledgements The Humboldt Bay Harbor District would like to offer our sincere thanks and appreciation to the authors and photographers who have allowed us to use their work in this report. Photography and Illustrations We would like to thank the photographers and illustrators who have so graciously donated the use of their images for this publication. Andrey Dolgor Dan Gotshall Polar Research Institute of Marine Sea Challengers, Inc. Fisheries And Oceanography [email protected] [email protected] Michael Lanboeuf Milton Love [email protected] Marine Science Institute [email protected] Stephen Metherell Jacques Moreau [email protected] [email protected] Bernd Ueberschaer Clinton Bauder [email protected] [email protected] Fish descriptions contained in this report are from: Froese, R. and Pauly, D. Editors. 2003 FishBase. Worldwide Web electronic publication. http://www.fishbase.org/ 13 August 2003 Photographer Fish Photographer Bauder, Clinton wolf-eel Gotshall, Daniel W scalyhead sculpin Bauder, Clinton blackeye goby Gotshall, Daniel W speckled sanddab Bauder, Clinton spotted cusk-eel Gotshall, Daniel W. bocaccio Bauder, Clinton tube-snout Gotshall, Daniel W. brown rockfish Gotshall, Daniel W. yellowtail rockfish Flescher, Don american shad Gotshall, Daniel W. dover sole Flescher, Don stripped bass Gotshall, Daniel W. pacific sanddab Gotshall, Daniel W. kelp greenling Garcia-Franco, Mauricio louvar -
Kane-Higham-2012.Pdf
G Model ZOOL-25301; No. of Pages 10 ARTICLE IN PRESS Zoology xxx (2012) xxx–xxx Contents lists available at SciVerse ScienceDirect Zoology journa l homepage: www.elsevier.com/locate/zool Life in the flow lane: differences in pectoral fin morphology suggest transitions in station-holding demand across species of marine sculpin ∗ Emily A. Kane , Timothy E. Higham University of California, Riverside, Department of Biology, 900 University Ave., Riverside, CA 92521, USA a r t i c l e i n f o a b s t r a c t Article history: Aquatic organisms exposed to high flow regimes typically exhibit adaptations to decrease overall drag Received 28 September 2011 and increase friction with the substrate. However, these adaptations have not yet been examined on a Received in revised form 27 February 2012 structural level. Sculpins (Scorpaeniformes: Cottoidea) have regionalized pectoral fins that are modified Accepted 7 March 2012 for increasing friction with the substrate, and morphological specialization varies across species. We examined body and pectoral fin morphology of 9 species to determine patterns of body and pectoral Keywords: fin specialization. Intact specimens and pectoral fins were measured, and multivariate techniques deter- Benthic fishes mined the differences among species. Cluster analysis identified 4 groups that likely represent differences Scorpaeniformes in station-holding demand, and this was supported by a discriminant function analysis. Primarily, the Flow regime high-demand group had increased peduncle depth (specialization for acceleration) and larger pectoral Functional regionalization Station-holding fins with less webbed ventral rays (specialization for mechanical gripping) compared to other groups; secondarily, the high-demand group had a greater aspect ratio and a reduced number of pectoral fin rays (specialization for lift generation) than other groups. -
Guide to the Coastal Marine Fishes of California
STATE OF CALIFORNIA THE RESOURCES AGENCY DEPARTMENT OF FISH AND GAME FISH BULLETIN 157 GUIDE TO THE COASTAL MARINE FISHES OF CALIFORNIA by DANIEL J. MILLER and ROBERT N. LEA Marine Resources Region 1972 ABSTRACT This is a comprehensive identification guide encompassing all shallow marine fishes within California waters. Geographic range limits, maximum size, depth range, a brief color description, and some meristic counts including, if available: fin ray counts, lateral line pores, lateral line scales, gill rakers, and vertebrae are given. Body proportions and shapes are used in the keys and a state- ment concerning the rarity or commonness in California is given for each species. In all, 554 species are described. Three of these have not been re- corded or confirmed as occurring in California waters but are included since they are apt to appear. The remainder have been recorded as occurring in an area between the Mexican and Oregon borders and offshore to at least 50 miles. Five of California species as yet have not been named or described, and ichthyologists studying these new forms have given information on identification to enable inclusion here. A dichotomous key to 144 families includes an outline figure of a repre- sentative for all but two families. Keys are presented for all larger families, and diagnostic features are pointed out on most of the figures. Illustrations are presented for all but eight species. Of the 554 species, 439 are found primarily in depths less than 400 ft., 48 are meso- or bathypelagic species, and 67 are deepwater bottom dwelling forms rarely taken in less than 400 ft. -
The Phylogeny of Marine Sculpins of the Genus Icelinus with Comments on the Evolution and Biogeography of the Pseudoblenninae
Zootaxa 4171 (3): 549–561 ISSN 1175-5326 (print edition) http://www.mapress.com/j/zt/ Article ZOOTAXA Copyright © 2016 Magnolia Press ISSN 1175-5334 (online edition) http://doi.org/10.11646/zootaxa.4171.3.9 http://zoobank.org/urn:lsid:zoobank.org:pub:F269CFAD-8904-4AD8-AD9C-A0FF4DF334E9 The phylogeny of marine sculpins of the genus Icelinus with comments on the evolution and biogeography of the Pseudoblenninae MATTHEW G. GIRARD1,2 & W. LEO SMITH1,3 1Biodiversity Institute and Department of Ecology and Evolutionary Biology, University of Kansas, Lawrence, KS 66045, USA. E-mail: [email protected] [email protected] Abstract The marine sculpins (Psychrolutidae) are a diverse percomorph family with notable morphological variation and repeated biogeographic patterns within the group. The psychrolutid genus Icelinus is unusual because it is one of the few near-shore members of the family that exhibits a trans-Pacific distribution; it has two species in the western Pacific and nine species in the eastern Pacific. Furthermore, the placement of Icelinus has been more inconsistent across molecular and morpho- logical analyses than many genera. Previous phylogenetic studies have hypothesized sister taxa to Icelinus ranging from Antipodocottus, Chitonotus, and Stlengis, to a mixed clade of psychrolutids. The varied placements across these studies may be due to limited taxon sampling within Icelinus, and previous authors have never included western Pacific species of Icelinus in their analyses. This study tests the monophyly of the genus, examines the relationships between eastern and western Pacific species of Icelinus, and explores the relationships of Icelinus within Psychrolutidae. Our results show that the traditional grouping of Icelinus is polyphyletic. -
Fishes-Of-The-Salish-Sea-Pp18.Pdf
NOAA Professional Paper NMFS 18 Fishes of the Salish Sea: a compilation and distributional analysis Theodore W. Pietsch James W. Orr September 2015 U.S. Department of Commerce NOAA Professional Penny Pritzker Secretary of Commerce Papers NMFS National Oceanic and Atmospheric Administration Kathryn D. Sullivan Scientifi c Editor Administrator Richard Langton National Marine Fisheries Service National Marine Northeast Fisheries Science Center Fisheries Service Maine Field Station Eileen Sobeck 17 Godfrey Drive, Suite 1 Assistant Administrator Orono, Maine 04473 for Fisheries Associate Editor Kathryn Dennis National Marine Fisheries Service Offi ce of Science and Technology Fisheries Research and Monitoring Division 1845 Wasp Blvd., Bldg. 178 Honolulu, Hawaii 96818 Managing Editor Shelley Arenas National Marine Fisheries Service Scientifi c Publications Offi ce 7600 Sand Point Way NE Seattle, Washington 98115 Editorial Committee Ann C. Matarese National Marine Fisheries Service James W. Orr National Marine Fisheries Service - The NOAA Professional Paper NMFS (ISSN 1931-4590) series is published by the Scientifi c Publications Offi ce, National Marine Fisheries Service, The NOAA Professional Paper NMFS series carries peer-reviewed, lengthy original NOAA, 7600 Sand Point Way NE, research reports, taxonomic keys, species synopses, fl ora and fauna studies, and data- Seattle, WA 98115. intensive reports on investigations in fi shery science, engineering, and economics. The Secretary of Commerce has Copies of the NOAA Professional Paper NMFS series are available free in limited determined that the publication of numbers to government agencies, both federal and state. They are also available in this series is necessary in the transac- exchange for other scientifi c and technical publications in the marine sciences. -
61661147.Pdf
Resource Inventory of Marine and Estuarine Fishes of the West Coast and Alaska: A Checklist of North Pacific and Arctic Ocean Species from Baja California to the Alaska–Yukon Border OCS Study MMS 2005-030 and USGS/NBII 2005-001 Project Cooperation This research addressed an information need identified Milton S. Love by the USGS Western Fisheries Research Center and the Marine Science Institute University of California, Santa Barbara to the Department University of California of the Interior’s Minerals Management Service, Pacific Santa Barbara, CA 93106 OCS Region, Camarillo, California. The resource inventory [email protected] information was further supported by the USGS’s National www.id.ucsb.edu/lovelab Biological Information Infrastructure as part of its ongoing aquatic GAP project in Puget Sound, Washington. Catherine W. Mecklenburg T. Anthony Mecklenburg Report Availability Pt. Stephens Research Available for viewing and in PDF at: P. O. Box 210307 http://wfrc.usgs.gov Auke Bay, AK 99821 http://far.nbii.gov [email protected] http://www.id.ucsb.edu/lovelab Lyman K. Thorsteinson Printed copies available from: Western Fisheries Research Center Milton Love U. S. Geological Survey Marine Science Institute 6505 NE 65th St. University of California, Santa Barbara Seattle, WA 98115 Santa Barbara, CA 93106 [email protected] (805) 893-2935 June 2005 Lyman Thorsteinson Western Fisheries Research Center Much of the research was performed under a coopera- U. S. Geological Survey tive agreement between the USGS’s Western Fisheries -
Here Or Other Reasons but Many, After Peer-Review and Editing, Appear in This Volume
Fifth Annual Larval Fish Conference The Fifth Annual Larval Fish Conference C. F. Bryan, J. V. Conner, F. M. Truesdale Editors Proceedings of a Conference held at the Louisiana State University, Baton Rouge Baton Rouge, Louisiana 2-3 March 1981 Louisiana Cooperative Fishery Research Unit and The School of Forestry and Wildlife Management The Fifth Annual Larval Fish Conference Copyright 1982 by the Conference Committee, C. F. Bryan, J. V. Conner, F. M. Truesdale Price: $ 8.00, advance payment required (includes fulfillment charges to USA addresses; add $ 2.00 for orders outside USA) Make checks payable to the sth Annual Larval Fish Conference and send to Louisiana Cooperative Fishery Research Unit, 245 Ag Center, Louisiana State University, Baton Rouge, Louisiana, 70803 Cover compiled by B. W. Bryan and C. W. Fleeger Printed in the United States of America by Louisiana State University Printing Office Baton Rouge, Louisiana 70893 II Preface The Fifth Annual Larval Fish Conference was a success for many reasons, foremost among which was the enthusiastic participation of 107 registrants who came from 31 of the United States and five Canadian provinces. Roughly two-thirds of the participants were from academia (happily including many students), while the remainder came in equal proportions from industry (consulting firms and utilities) and state or federal conservation agencies. The meeting featured 24 contributed papers and 15 posters, dealing mainly with growth estimation; distribution; feeding ecology; sampling methodology; and descriptive morphology of freshwater, estuarine, and marine fishes. Some of the contributions were withheld for publication elsewhere or other reasons but many, after peer-review and editing, appear in this volume. -
The Phylogeny of Marine Sculpins of the Genus Icelinus with Comments on the Evolution and Biogeography of the Pseudoblenninae
Zootaxa 4171 (3): 549–561 ISSN 1175-5326 (print edition) http://www.mapress.com/j/zt/ Article ZOOTAXA Copyright © 2016 Magnolia Press ISSN 1175-5334 (online edition) http://doi.org/10.11646/zootaxa.4171.3.9 http://zoobank.org/urn:lsid:zoobank.org:pub:F269CFAD-8904-4AD8-AD9C-A0FF4DF334E9 The phylogeny of marine sculpins of the genus Icelinus with comments on the evolution and biogeography of the Pseudoblenninae MATTHEW G. GIRARD1,2 & W. LEO SMITH1,3 1Biodiversity Institute and Department of Ecology and Evolutionary Biology, University of Kansas, Lawrence, KS 66045, USA. E-mail: [email protected] [email protected] Abstract The marine sculpins (Psychrolutidae) are a diverse percomorph family with notable morphological variation and repeated biogeographic patterns within the group. The psychrolutid genus Icelinus is unusual because it is one of the few near-shore members of the family that exhibits a trans-Pacific distribution; it has two species in the western Pacific and nine species in the eastern Pacific. Furthermore, the placement of Icelinus has been more inconsistent across molecular and morpho- logical analyses than many genera. Previous phylogenetic studies have hypothesized sister taxa to Icelinus ranging from Antipodocottus, Chitonotus, and Stlengis, to a mixed clade of psychrolutids. The varied placements across these studies may be due to limited taxon sampling within Icelinus, and previous authors have never included western Pacific species of Icelinus in their analyses. This study tests the monophyly of the genus, examines the relationships between eastern and western Pacific species of Icelinus, and explores the relationships of Icelinus within Psychrolutidae. Our results show that the traditional grouping of Icelinus is polyphyletic. -
Seasonal Fish and Invertebrate Communities in Three Northern
SEASONAL FISH AND INVERTEBRATE COMMUNITIES IN THREE NORTHERN CALIFORNIA ESTUARIES By Katherine Osborn A Thesis Presented to The Faculty of Humboldt State University In Partial Fulfillment of the Requirements for the Degree Master of Science in Natural Resources: Fisheries Committee Membership Dr. Timothy Mulligan, Committee Chair Dr. Andre Buchheister, Committee Member Dr. Darren Ward, Committee Member Dr. Frank Shaughnessy, Committee Member Dr. Alison O’Dowd, Graduate Coordinator December 2017 ABSTRACT SEASONAL FISH AND INVERTEBRATE COMMUNITIES IN THREE NORTHERN CALIFORNIA ESTUARIES Katherine Osborn The majority of Northern California estuaries are small, flooded, river valleys that are largely unstudied due to their small sizes and remote locations. Yet these estuaries serve as important nursery areas for many marine fish species including rockfish, flatfish, smelt, and herring, and they are vital to anadromous species such as Chinook Salmon (Oncorhynchus tshawytscha) and Steelhead (O. mykiss). I sampled the summer and winter fish and invertebrate communities of the Big, Mad, and Ten Mile river estuaries. Fish were sampled via beach seine or fyke net and invertebrates were sampled via benthic cores, June 2014-June 2016. This research is part of a larger suite of studies establishing baseline conditions in Northern California Marine Protected Areas (MPAs). Big and Ten Mile river estuaries in Mendocino County were designated as MPAs in 2012. The Mad River Estuary in Humboldt County was selected as a non-MPA site to investigate its potential as a reference estuary. In the Mad River Estuary, additional sampling was conducted and a diet study was carried out on the feeding habits of two benthic fishes: Pacific Staghorn Sculpin (Leptocottus armatus) and English Sole (Parophrys vetulus). -
Seasonal Fish and Invertebrate Communities in Three Northern
SEASONAL FISH AND INVERTEBRATE COMMUNITIES IN THREE NORTHERN CALIFORNIA ESTUARIES By Katherine Osborn A Thesis Presented to The Faculty of Humboldt State University In Partial Fulfillment of the Requirements for the Degree Master of Science in Natural Resources: Fisheries Committee Membership Dr. Timothy Mulligan, Committee Chair Dr. Andre Buchheister, Committee Member Dr. Darren Ward, Committee Member Dr. Frank Shaughnessy, Committee Member Dr. Alison O’Dowd, Graduate Coordinator December 2017 ABSTRACT SEASONAL FISH AND INVERTEBRATE COMMUNITIES IN THREE NORTHERN CALIFORNIA ESTUARIES Katherine Osborn The majority of Northern California estuaries are small, flooded, river valleys that are largely unstudied due to their small sizes and remote locations. Yet these estuaries serve as important nursery areas for many marine fish species including rockfish, flatfish, smelt, and herring, and they are vital to anadromous species such as Chinook Salmon (Oncorhynchus tshawytscha) and Steelhead (O. mykiss). I sampled the summer and winter fish and invertebrate communities of the Big, Mad, and Ten Mile river estuaries. Fish were sampled via beach seine or fyke net and invertebrates were sampled via benthic cores, June 2014-June 2016. This research is part of a larger suite of studies establishing baseline conditions in Northern California Marine Protected Areas (MPAs). Big and Ten Mile river estuaries in Mendocino County were designated as MPAs in 2012. The Mad River Estuary in Humboldt County was selected as a non-MPA site to investigate its potential as a reference estuary. In the Mad River Estuary, additional sampling was conducted and a diet study was carried out on the feeding habits of two benthic fishes: Pacific Staghorn Sculpin (Leptocottus armatus) and English Sole (Parophrys vetulus).