Stability 11.1 Free Radicals –Resonance
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Planar Cyclopenten‐4‐Yl Cations: Highly Delocalized Π Aromatics
Angewandte Research Articles Chemie How to cite: Angew.Chem. Int. Ed. 2020, 59,18809–18815 Carbocations International Edition: doi.org/10.1002/anie.202009644 German Edition: doi.org/10.1002/ange.202009644 Planar Cyclopenten-4-yl Cations:Highly Delocalized p Aromatics Stabilized by Hyperconjugation Samuel Nees,Thomas Kupfer,Alexander Hofmann, and Holger Braunschweig* 1 B Abstract: Theoretical studies predicted the planar cyclopenten- being energetically favored by 18.8 kcalmolÀ over 1 (MP3/ 4-yl cation to be aclassical carbocation, and the highest-energy 6-31G**).[11–13] Thebishomoaromatic structure 1B itself is + 1 isomer of C5H7 .Hence,its existence has not been verified about 6–14 kcalmolÀ lower in energy (depending on the level experimentally so far.Wewere now able to isolate two stable of theory) than the classical planar structure 1C,making the derivatives of the cyclopenten-4-yl cation by reaction of bulky cyclopenten-4-yl cation (1C)the least favorable isomer.Early R alanes Cp AlBr2 with AlBr3.Elucidation of their (electronic) solvolysis studies are consistent with these findings,with structures by X-raydiffraction and quantum chemistry studies allylic 1A being the only observable isomer, notwithstanding revealed planar geometries and strong hyperconjugation the nature of the studied cyclopenteneprecursor.[14–18] Thus, interactions primarily from the C Al s bonds to the empty p attempts to generate isomer 1C,orits homoaromatic analog À orbital of the cationic sp2 carbon center.Aclose inspection of 1B,bysolvolysis of 4-Br/OTs-cyclopentene -
On the Harmonic Oscillator Model of Electron Delocalization (HOMED) Index and Its Application to Heteroatomic Π-Electron Systems
Symmetry 2010, 2, 1485-1509; doi:10.3390/sym2031485 OPEN ACCESS symmetry ISSN 2073-8994 www.mdpi.com/journal/symmetry Article On the Harmonic Oscillator Model of Electron Delocalization (HOMED) Index and its Application to Heteroatomic π-Electron Systems Ewa D. Raczyñska 1, *, Małgorzata Hallman 1, Katarzyna Kolczyñska 2 and Tomasz M. Stêpniewski 2 1 Department of Chemistry, Warsaw University of Life Sciences (SGGW), ul. Nowoursynowska 159c, 02-776 Warszawa, Poland 2 Interdisciplinary Department of Biotechnology, Warsaw University of Life Sciences (SGGW), ul. Nowoursynowska 166, 02-776 Warszawa, Poland * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +48-22-59-37623; Fax: +49-22-59-37635. Received: 23 April 2010; in revised form: 19 May 2010 / Accepted: 7 July 2010 / Published: 12 July 2010 Abstract: The HOMA (Harmonic Oscillator Model of Aromaticity) index, reformulated in 1993, has been very often applied to describe π-electron delocalization for mono- and polycyclic π-electron systems. However, different measures of π-electron delocalization were employed for the CC, CX, and XY bonds, and this index seems to be inappropriate for compounds containing heteroatoms. In order to describe properly various resonance effects (σ-π hyperconjugation, n-π conjugation, π-π conjugation, and aromaticity) possible for heteroatomic π-electron systems, some modifications, based on the original HOMA idea, were proposed and tested for simple DFT structures containing C, N, and O atoms. An abbreviation HOMED was used for the modified index. Keywords: geometry-based index; π -electron delocalization; σ - π hyperconjugation; n-π conjugation; π-π conjugation; aromaticity; heteroatomic compounds; DFT 1. -
Oxidative Stress and Radical-Induced Signalling John R
part 2. mechanisms of carcinogenesis chapter 15. Oxidative stress and radical-induced signalling John R. Bucher PART 2 CHAPTER 15 Throughout evolution, aerobic An imbalance between the normal Pierre et al., 2002). Peroxisomes are organisms have developed mul- production of oxygen radicals and a source of H2O2, through reactions tiple defence systems to protect their capture and disposal by pro- involving acyl-CoA oxidase (which themselves against oxygen radicals tective enzyme systems and antiox- is involved in oxidation of long-chain (Benzie, 2000). One-, two-, and idants results in oxidative stress, and fatty acids), d-amino acid oxidase, three-electron reductions of molecu- this condition has been proposed and other oxidases (Schrader and lar oxygen give rise to, respectively, to be the basis of many deleterious Fahimi, 2006). • − superoxide (O2 ), hydrogen peroxide chronic health conditions and dis- When stimulated, inflammatory (H2O2, a radical precursor), and the eases, including cancer. cells such as neutrophils, eosino- highly reactive hydroxyl radical (•OH) phils, and macrophages produce ox- or equivalent transition metal–oxy- Sources of oxygen radicals ygen radicals during the associated gen complexes (Miller et al., 1990). respiratory burst (the rapid release of Reactions of oxygen radicals with Mitochondrial oxidative phosphor- reactive oxygen species from cells) cellular components can deplete an- ylation is a major source of oxy- that involves nicotinamide adenine tioxidants, can cause direct oxidative gen radicals of endogenous -
Chem 51B Chapter 15 Notes
Lecture Notes Chem 51B S. King Chapter 15 Radical Reactions I. Introduction A radical is a highly reactive intermediate with an unpaired electron. Radicals are involved in oxidation reactions, combustion reactions, and biological reactions. Structure: compare with: compare with: Stability: Free radicals and carbocations are both electron deficient and they follow a similar order of stability: R R H H , > R C > R C > R C > H C R H H H • like carbocations, radicals can be stabilized by resonance. H H H H C C C C H C CH3 H C CH3 H H • unlike carbocations, no rearrangements are observed in free radical reactions. Q. How are free radicals formed? A. Free radicals are formed when bonds break homolytically: 103 Look @ the arrow pushing: Notice the fishhook arrow! It shows movement of a single electron: Compare with heterolytic bond cleavage: A double-headed arrow shows movement of a pair of electrons: Nomenclature: bromide ion bromine atom Bromine (molecule) II. General Features of Radical Reactions Radicals are formed from covalent bonds by adding energy in the form of heat or light (hν). Some radical reactions are carried out in the presence of radical initiators, which contain weak bonds that readily undergo homolysis. The most common radical initiators are peroxides (ROOR), which contain the weak O−O bond. A. Common Reactions of Radicals: Radicals undergo two common reactions: they react with σ-bonds and they add to π-bonds. 1. Reaction of a Radical X• with a C−H bond A radical X• abstracts a H atom from a C−H bond to form H−X and a carbon radical: 104 2. -
4.01 Ozone, Hydroxyl Radical, and Oxidative Capacity
4.01 Ozone, Hydroxyl Radical,and OxidativeCapacity R.G.Prinn Massachusetts InstituteofTechnology,Cambridge, MA, USA 4.01.1 INTRODUCTION 1 4.01.2 EVOLUTIONOFOXIDIZING CAPABILITY 3 4.01.2.1 Prebiotic Atmosphere 4 4.01.2.2 Pre-industrialAtmosphere 5 4.01.3 FUNDAMENTAL REACTIONS 5 4.01.3.1 Troposphere 5 4.01.3.2 Stratosphere 7 4.01.4METEOROLOGICAL INFLUENCES 8 4.01.5HUMAN INFLUENCES 9 4.01.5.1 IndustrialRevolution 9 4.01.5.2 FutureProjections 10 4.01.6 MEASURING OXIDATION RATES 11 4.01.6.1 DirectMeasurement 11 4.01.6.2 IndirectMeasurement 13 4.01.7 ATMOSPHERIC MODELS AND OBSERVATIONS 16 4.01.8CONCLUSIONS 16 REFERENCES 17 4.01.1 INTRODUCTION overall rateofthisprocess asthe “oxidation capacity” ofthe atmosphere.Without thiseffi- The atmosphereisachemically complexand cient cleansingprocess,the levels ofmany dynamic systeminteractinginsignificant ways emitted gasescouldriseso high thattheywould withthe oceans,land, andlivingorganisms. A radicallychange the chemicalnatureofour keyprocess proceedinginthe atmosphereis atmosphereandbiosphereand, through the oxidation ofawidevariety ofrelatively reduced greenhouseeffect,our climate. chemicalcompoundsproduced largely bythe Oxidation becameanimportant atmospheric biosphere.Thesecompoundsinclude hydrocar- reaction on Earthonce molecularoxygen(O 2 ) bons(RH),carbon monoxide (CO),sulfur dioxide from photosynthesishad reached sufficiently (SO2 ),nitrogenoxides(NOx ),andammonia high levels.ThisO 2 couldthenphotodissociate (NH3 )amongothers. Theyalso include gases inthe atmosphereto giveoxygenatoms,which associated -
Bsc Chemistry
Subject Chemistry Paper No and Title Paper 1: ORGANIC CHEMISTRY- I (Nature of Bonding and Stereochemistry) Module No and Module 3: Hyper-Conjugation Title Module Tag CHE_P1_M3 CHEMISTRY PAPER No. 1: ORGANIC CHEMISTRY- I (Nature of Bonding and Stereochemistry) Module No. 3: Hyper-Conjugation TABLE OF CONTENT 1. Learning outcomes 2. Introduction 3. Hyperconjugation 4. Requirements for Hyperconjugation 5. Consequences and Applications of Hyperconjugation 6. Reverse Hyperconjugation 7. Summary CHEMISTRY PAPER No. 1: ORGANIC CHEMISTRY- I (Nature of Bonding and Stereochemistry) Module No. 3: Hyper-Conjugation 1. Learning Outcomes After studying this module you shall be able to: Understand the concept of hyperconjugation. Know about the structural requirements in a molecule to show hyperconjugation. Learn about the important consequences and applications of hyperconjugation. Comprehend the concept of reverse hyperconjugation. 2. Introduction In conjugation, we have studied that the electrons move from one p orbital to other which are aligned in parallel planes. Is it possible for electron to jump from p orbital to sp3 orbital that are not parallelly aligned with one another? The answer is yes. This type of conjugation is not normal, it is extra-ordinary. Hence, the name hyper-conjugation. It is also know as no-bond resonance. Let us study more about it. 3. Hyperconjugation The normal electron releasing inductive effect (+I effect) of alkyl groups is in the following order: But it was observed by Baker and Nathan that in conjugated system, the attachment of alkyl groups reverse their capability of electron releasing. They suggested that alkyl groups are capable of releasing electrons by some process other than inductive. -
Structure, Stability, and Substituent Effects in Aromatic S-Nitrosothiols: the Crucial Effect of a Cascading Negative Hyperconjugation/Conjugation Interaction
Marquette University e-Publications@Marquette Chemistry Faculty Research and Publications Chemistry, Department of 10-23-2014 Structure, Stability, and Substituent Effects in Aromatic S-Nitrosothiols: The Crucial Effect of a Cascading Negative Hyperconjugation/Conjugation Interaction Matthew Flister Marquette University, [email protected] Qadir K. Timerghazin Marquette University, [email protected] Follow this and additional works at: https://epublications.marquette.edu/chem_fac Part of the Chemistry Commons Recommended Citation Flister, Matthew and Timerghazin, Qadir K., "Structure, Stability, and Substituent Effects in Aromatic S-Nitrosothiols: The Crucial Effect of a Cascading Negative Hyperconjugation/Conjugation Interaction" (2014). Chemistry Faculty Research and Publications. 360. https://epublications.marquette.edu/chem_fac/360 Marquette University e-Publications@Marquette Chemistry Faculty Research and Publications/College of Arts and Sciences This paper is NOT THE PUBLISHED VERSION; but the author’s final, peer-reviewed manuscript. The published version may be accessed by following the link in the citation below. Journal of Physical Chemistry : A, Vol. 18, No. 42 (October 23, 2014): 9914–9924. DOI. This article is © American Chemical Society Publications and permission has been granted for this version to appear in e-Publications@Marquette. American Chemical Society Publications does not grant permission for this article to be further copied/distributed or hosted elsewhere without the express permission from American Chemical Society Publications. Structure, Stability, and Substituent Effects in Aromatic S-Nitrosothiols: The Crucial Effect of a Cascading Negative Hyperconjugation/Conjugation Interaction Matthew Flister Department of Chemistry, Marquette University, Milwaukee, Wisconsin Qadir K. Timerghazin Department of Chemistry, Marquette University, Milwaukee, Wisconsin Abstract Aromatic S-nitrosothiols (RSNOs) are of significant interest as potential donors of nitric oxide and related biologically active molecules. -
Chemical Basis of Reactive Oxygen Species Reactivity and Involvement in Neurodegenerative Diseases
International Journal of Molecular Sciences Review Chemical Basis of Reactive Oxygen Species Reactivity and Involvement in Neurodegenerative Diseases Fabrice Collin Laboratoire des IMRCP, Université de Toulouse, CNRS UMR 5623, Université Toulouse III-Paul Sabatier, 118 Route de Narbonne, 31062 Toulouse CEDEX 09, France; [email protected] Received: 26 April 2019; Accepted: 13 May 2019; Published: 15 May 2019 Abstract: Increasing numbers of individuals suffer from neurodegenerative diseases, which are characterized by progressive loss of neurons. Oxidative stress, in particular, the overproduction of Reactive Oxygen Species (ROS), play an important role in the development of these diseases, as evidenced by the detection of products of lipid, protein and DNA oxidation in vivo. Even if they participate in cell signaling and metabolism regulation, ROS are also formidable weapons against most of the biological materials because of their intrinsic nature. By nature too, neurons are particularly sensitive to oxidation because of their high polyunsaturated fatty acid content, weak antioxidant defense and high oxygen consumption. Thus, the overproduction of ROS in neurons appears as particularly deleterious and the mechanisms involved in oxidative degradation of biomolecules are numerous and complexes. This review highlights the production and regulation of ROS, their chemical properties, both from kinetic and thermodynamic points of view, the links between them, and their implication in neurodegenerative diseases. Keywords: reactive oxygen species; superoxide anion; hydroxyl radical; hydrogen peroxide; hydroperoxides; neurodegenerative diseases; NADPH oxidase; superoxide dismutase 1. Introduction Reactive Oxygen Species (ROS) are radical or molecular species whose physical-chemical properties are well-known both on thermodynamic and kinetic points of view. -
Contribution of Quantum Chemistry to the Study of Dienes and Polyenes
The Chemistry of Dienes and Polyenes. Volume 1 Edited by Zvi Rappoport Copyright ¶ 1997 John Wiley & Sons, Ltd. ISBN: 0-471-96512-X CHAPTER 1 Contribution of quantum chemistry to the study of dienes and polyenes V. BRANCHADELL, M. SODUPE, A. OLIVA and J. BERTRAN´ Departament de Qu´ımica, Universitat Autonoma` de Barcelona, 08193 Bellaterra, Spain Fax: (34)35812920; e-mail: [email protected] I. INTRODUCTION ..................................... 2 II. SURVEY OF THEORETICAL METHODS .................... 2 III. GROUND STATE STRUCTURE AND VIBRATIONAL SPECTRA .... 4 A. Butadiene ........................................ 4 1. Geometry ...................................... 4 2. Vibrational frequencies and force field ................... 5 3. Conformational equilibrium .......................... 6 B. Trienes and Tetraenes ................................ 7 1. Geometries and conformations ........................ 7 2. Vibrational frequencies and force constants ................ 9 C. Longer Polyenes .................................... 9 IV. EXCITED STATES .................................... 10 A. Butadiene ........................................ 11 B. Hexatriene ........................................ 13 C. Octatetraene ...................................... 14 D. Longer Polyenes .................................... 14 V. MOLECULAR ELECTRIC PROPERTIES ..................... 15 VI. CHEMICAL REACTIVITY .............................. 17 A. The Diels Alder Reaction ............................. 17 1. Reaction mechanism .............................. -
Free Radicals, Natural Antioxidants, and Their Reaction Mechanisms Cite This: RSC Adv.,2015,5, 27986 Satish Balasaheb Nimse*A and Dilipkumar Palb
RSC Advances REVIEW View Article Online View Journal | View Issue Free radicals, natural antioxidants, and their reaction mechanisms Cite this: RSC Adv.,2015,5, 27986 Satish Balasaheb Nimse*a and Dilipkumar Palb The normal biochemical reactions in our body, increased exposure to the environment, and higher levels of dietary xenobiotic's result in the generation of reactive oxygen species (ROS) and reactive nitrogen species (RNS). The ROS and RNS create oxidative stress in different pathophysiological conditions. The reported chemical evidence suggests that dietary antioxidants help in disease prevention. The antioxidant compounds react in one-electron reactions with free radicals in vivo/in vitro and prevent oxidative damage. Therefore, it is very important to understand the reaction mechanism of antioxidants with the free radicals. This review elaborates the mechanism of action of the natural antioxidant compounds and Received 28th October 2014 assays for the evaluation of their antioxidant activities. The reaction mechanisms of the antioxidant Accepted 12th March 2015 assays are briefly discussed (165 references). Practical applications: understanding the reaction DOI: 10.1039/c4ra13315c mechanisms can help in evaluating the antioxidant activity of various antioxidant compounds as well as Creative Commons Attribution 3.0 Unported Licence. www.rsc.org/advances in the development of novel antioxidants. 1. Introduction and background enzymes convert dangerous oxidative products to hydrogen peroxide (H2O2) and then to water, in a multi-step process in Antioxidants are molecules that inhibit or quench free radical presence of cofactors such as copper, zinc, manganese, and reactions and delay or inhibit cellular damage.1 Though the iron. Non-enzymatic antioxidants work by interrupting free antioxidant defenses are different from species to species, the radical chain reactions. -
Effect of Hyperconjugation on Ionization Energies of Hydroxyalkyl Radicals
J. Phys. Chem. A 2008, 112, 9965–9969 9965 Effect of Hyperconjugation on Ionization Energies of Hydroxyalkyl Radicals Boris Karpichev, Hanna Reisler, Anna I. Krylov, and Kadir Diri* Department of Chemistry, UniVersity of Southern California, Los Angeles, California 90089-0482 ReceiVed: June 14, 2008; ReVised Manuscript ReceiVed: August 01, 2008 On the basis of electronic structure calculations and molecular orbital analysis, we offer a physical explanation of the observed large decrease (0.9 eV) in ionization energies (IE) in going from hydroxymethyl to hydroxyethyl radical. The effect is attributed to hyperconjugative interactions between the σCH orbitals of the methyl group in hydroxyethyl, the singly occupied p orbital of carbon, and the lone pair p orbital of oxygen. Analyses of vertical and adiabatic IEs and hyperconjugation energies computed by the natural bond orbital (NBO) procedure reveal that the decrease is due to the destabilization of the singly occupied molecular orbital in hydroxyethyl radical as well as structural relaxation of the cation maximizing the hyperconjugative interactions. The stabilization is achieved due to the contraction of the CO and CC bonds, whereas large changes in torsional angles bear little effect on the total hyperconjugation energies and, consequently, IEs. 1. Introduction bond strengths21 and conformations20 upon substitutions, the vibrational spectra and structures of hydrocarbon radicals,22,23 Hydroxyalkyl radicals are important intermediates in combus- 1,2 the trends in electronically excited states in alkylperoxy radi- tion and atmospheric processes. The most studied of these 24 3-12 cals, and more. There is also a strong evidence that the radicals are the hydroxymethyl and 1-hydroxyethyl radicals. -
Conjugated, Carbon-Centered Radicals
molecules Review Synthesis, Physical Properties, and Reactivity of Stable, π-Conjugated, Carbon-Centered Radicals Takashi Kubo Department of Chemistry, Graduate School of Science, Osaka University, Toyonaka, Osaka 560-0043, Japan; [email protected] Received: 26 January 2019; Accepted: 11 February 2019; Published: 13 February 2019 Abstract: Recently, long-lived, organic radical species have attracted much attention from chemists and material scientists because of their unique electronic properties derived from their magnetic spin and singly occupied molecular orbitals. Most stable and persistent organic radicals are heteroatom-centered radicals, whereas carbon-centered radicals are generally very reactive and therefore have had limited applications. Because the physical properties of carbon-centered radicals depend predominantly on the topology of the π-electron array, the development of new carbon-centered radicals is key to new basic molecular skeletons that promise novel and diverse applications of spin materials. This account summarizes our recent studies on the development of novel carbon-centered radicals, including phenalenyl, fluorenyl, and triarylmethyl radicals. Keywords: π-conjugated radicals; hydrocarbon radicals; persistent; anthryl; phenalenyl; fluorenyl 1. Introduction Organic radical species are generally recognized as highly reactive, intermediate species. However, recently, functional materials taking advantage of the feature of open-shell electronic structure have attracted much attention from chemists and material scientists; therefore, the development of novel, long-lived, organic, radical species becomes more important [1–7]. Nitronyl nitroxides, galvinoxyl, and DPPH are well known as stable, organic, radical species, which are commercially available chemicals. These stable radical species are “heteroatom-centered radicals”, in which unpaired electrons are mainly distributed on heteroatoms.