Leon Springs Pupfish (Cyprinodon Bovinus) 5-Year Review
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Endangered Species
FEATURE: ENDANGERED SPECIES Conservation Status of Imperiled North American Freshwater and Diadromous Fishes ABSTRACT: This is the third compilation of imperiled (i.e., endangered, threatened, vulnerable) plus extinct freshwater and diadromous fishes of North America prepared by the American Fisheries Society’s Endangered Species Committee. Since the last revision in 1989, imperilment of inland fishes has increased substantially. This list includes 700 extant taxa representing 133 genera and 36 families, a 92% increase over the 364 listed in 1989. The increase reflects the addition of distinct populations, previously non-imperiled fishes, and recently described or discovered taxa. Approximately 39% of described fish species of the continent are imperiled. There are 230 vulnerable, 190 threatened, and 280 endangered extant taxa, and 61 taxa presumed extinct or extirpated from nature. Of those that were imperiled in 1989, most (89%) are the same or worse in conservation status; only 6% have improved in status, and 5% were delisted for various reasons. Habitat degradation and nonindigenous species are the main threats to at-risk fishes, many of which are restricted to small ranges. Documenting the diversity and status of rare fishes is a critical step in identifying and implementing appropriate actions necessary for their protection and management. Howard L. Jelks, Frank McCormick, Stephen J. Walsh, Joseph S. Nelson, Noel M. Burkhead, Steven P. Platania, Salvador Contreras-Balderas, Brady A. Porter, Edmundo Díaz-Pardo, Claude B. Renaud, Dean A. Hendrickson, Juan Jacobo Schmitter-Soto, John Lyons, Eric B. Taylor, and Nicholas E. Mandrak, Melvin L. Warren, Jr. Jelks, Walsh, and Burkhead are research McCormick is a biologist with the biologists with the U.S. -
The Endangered White Sands Pupfish (Cyprinodon Tularosa)
The Endangered White Sands pupfish (Cyprinodon tularosa) genome reveals low diversity and heterogenous patterns of differentiation Andrew Black1, Janna Willoughby2, Anna Br¨uniche-Olsen3, Brian Pierce4, and Andrew DeWoody1 1Purdue University 2Auburn University 3University of Copenhagen 4Texas A and M University College Station November 24, 2020 Abstract The White Sands pupfish (Cyprinodon tularosa), endemic to New Mexico in Southwestern North America, is of conservation concern due in part to invasive species, chemical pollution, and groundwater withdrawal. Herein, we developed a high quality draft reference genome and use it to provide biological insights into the evolution and conservation of C. tularosa. Specifically, we localized microsatellite markers previously used to demarcate Evolutionary Significant Units, evaluated the possibility of introgression into the C. tularosa genome, and compared genomic diversity among related species. The de novo assembly of PacBio Sequel II error-corrected reads resulted in a 1.08Gb draft genome with a contig N50 of 1.4Mb and 25,260 annotated protein coding genes, including 95% of the expected Actinopterigii conserved orthologs. Many of the previously described C. tularosa microsatellite markers fell within or near genes and exhibited a pattern of increased heterozygosity near genic areas compared to those in intergenic regions. Genetic distances between C. tularosa and the widespread invasive species C. variegatus, which diverged ~1.6-4.7 MYA, were 0.027 (nuclear) and 0.022 (mitochondrial). Nuclear alignments revealed putative tracts of introgression that merit further investigation. Genome-wide heterozygosity was markedly lower in C. tularosa compared to estimates from related species, likely because of smaller long-term effective population sizes constrained by their isolated and limited habitat. -
Review Article Cyprinodontid Fishes of the World
Archive ofIran. SID J. Ichthyol. (March 2018), 5(1): 1–29 Received: January 5, 2018 © 2018 Iranian Society of Ichthyology Accepted: March 1, 2018 P-ISSN: 2383-1561; E-ISSN: 2383-0964 doi: 10.22034/iji.v5i1.267 http://www.ijichthyol.org Review Article Cyprinodontid fishes of the world: an updated list of taxonomy, distribution and conservation status (Teleostei: Cyprinodontoidea) Hamid Reza ESMAEILI1*, Tayebeh ASRAR1, Ali GHOLAMIFARD2 1Ichthyology and Molecular Systematics Research Laboratory, Zoology Section, Department of Biology, College of Sciences, Shiraz University, Shiraz, Iran. 2Department of Biology, Faculty of Sciences, Lorestan University, 6815144316 Khorramabad, Iran. Email: [email protected] Abstract: This checklist aims to list all the reported cyprinodontid fishes (superfamily Cyprinodontoidea/pupfishes) of the world. It lists 141 species in 8 genera and 4 families. The most diverse family is Cyprinodontidae (54 species, 38%), followed by Orestiidae (45 species, 32%), Aphaniidae (39 species, 28%), and Cubanichthyidae (3 species, 2%). Among 141 listed species, 73 (51.8%) species are Not Evaluated (NE), 15 (10.6%) Least Concern (LC), 9 (6.4%) Vulnerable (VU), 3 (2.1%) Data Deficient (DD), 11 (7.8%) Critically Endangered (CR), 4 (2.8%) Near Threatened (NT), 18 (12.8%) Endangered (EN), 3 (2.1%) Extinct in the Wild (EW) and 5 (3.5%) Extinct of the Red List of IUCN. They inhabit in the fresh, brackish and marine waters of the United States, Middle America, the West Indies, parts of northern South America, North Africa, the Mediterranean Anatolian region, coastal areas of the Persian Gulf and Makran Sea (Oman Sea), the northern Arabian Sea east to Gujarat in India, and some endorheic basins of Iran, Pakistan and the Arabian Peninsula. -
Comanche Springs Pupfish (Cyprinodon Elegans)
Comanche Springs Pupfish (Cyprinodon elegans) 5-Year Review: Summary and Evaluation Photo Credit: Uvalde National Fish Hatchery, USFWS U.S. Fish and Wildlife Service Austin Ecological Services Field Office Austin, TX August 2013 5-YEAR REVIEW Species reviewed: Comanche Springs pupfish (Cyprinodon elegans) TABLE OF CONTENTS 1.0 GENERAL INFORMATION ........................................................................................... 2 1.1 Reviewers ......................................................................................................................... 2 1.2 Purpose of 5-Year Reviews: ............................................................................................. 3 1.3 Methodology Used To Complete the Review .................................................................. 3 1.4 Background ...................................................................................................................... 3 2.0 REVIEW ANALYSIS ........................................................................................................ 4 2.1 Application of the 1996 Distinct Population Segment (DPS) policy ............................... 4 2.2 Recovery Criteria ............................................................................................................. 4 2.3 Updated Information and Current Species Status ............................................................ 5 2.4 Synthesis........................................................................................................................ -
Conservation Status of Imperiled North American Freshwater And
FEATURE: ENDANGERED SPECIES Conservation Status of Imperiled North American Freshwater and Diadromous Fishes ABSTRACT: This is the third compilation of imperiled (i.e., endangered, threatened, vulnerable) plus extinct freshwater and diadromous fishes of North America prepared by the American Fisheries Society’s Endangered Species Committee. Since the last revision in 1989, imperilment of inland fishes has increased substantially. This list includes 700 extant taxa representing 133 genera and 36 families, a 92% increase over the 364 listed in 1989. The increase reflects the addition of distinct populations, previously non-imperiled fishes, and recently described or discovered taxa. Approximately 39% of described fish species of the continent are imperiled. There are 230 vulnerable, 190 threatened, and 280 endangered extant taxa, and 61 taxa presumed extinct or extirpated from nature. Of those that were imperiled in 1989, most (89%) are the same or worse in conservation status; only 6% have improved in status, and 5% were delisted for various reasons. Habitat degradation and nonindigenous species are the main threats to at-risk fishes, many of which are restricted to small ranges. Documenting the diversity and status of rare fishes is a critical step in identifying and implementing appropriate actions necessary for their protection and management. Howard L. Jelks, Frank McCormick, Stephen J. Walsh, Joseph S. Nelson, Noel M. Burkhead, Steven P. Platania, Salvador Contreras-Balderas, Brady A. Porter, Edmundo Díaz-Pardo, Claude B. Renaud, Dean A. Hendrickson, Juan Jacobo Schmitter-Soto, John Lyons, Eric B. Taylor, and Nicholas E. Mandrak, Melvin L. Warren, Jr. Jelks, Walsh, and Burkhead are research McCormick is a biologist with the biologists with the U.S. -
Renovated Breeding Habitat Use in Wild & Captive-Bred Populations of an Endangered Desert Pupfish
t & E si y nd er a v n i g d e o i r Al-Shaer et al., J Biodivers Endanger Species 2016, 4:1 e Journal of Biodiversity & Endangered B d f S DOI: 10.4172/2332-2543.1000156 o p l e a c ISSN:n 2332-2543 r i e u s o J Species Research Article Open Access Renovated Breeding Habitat Use in Wild & Captive-bred Populations of an Endangered Desert Pupfish Layla Al-Shaer*, Andrew Bloch, Timothy Paciorek, Zachary Carroll, Andrew Black and Murray Itzkowitz Department of Biological Sciences, Lehigh University, Bethlehem, PA, USA Abstract The Leon Springs pupfish (Cyprinodon bovinus) is an endangered fish endemic to Diamond Y Spring in west Texas. To mitigate the negative effects of habitat loss, Diamond Y Spring was renovated to maintain and provide additional breeding habitat. Monsanto Pool, an extant location where C. bovinus have become extirpated, was also renovated in order to increase breeding habitat. After Monsanto Pool was renovated, captive-bred C. bovinus were reintroduced to this location to both increase the range of this species, and evaluate whether captive release is a viable option. These conservation efforts have led to the unique opportunity to evaluate the efficacy of habitat renovations in wild and captive- bred populations of C. bovinus, occurring in natural and renovated breeding habitats at two separate locations. The overarching question asked was, is it better to renovate an unoccupied site and introduce captive-bred individuals, or to expand an occupied site that would allow the current population to grow? Habitat use and spawning in three different breeding areas were compared, and specific ecological factors were measured at each site in order to determine if any coincided with observed C. -
Beneath the Waters of Balmorhea State Park
Beneath the Waters of Balmorhea State Park by Garold W. Sneegas After reading John Bondhus' proposal for a not an easy task, as anyone who has ever attempted it NANFA Endangered Species Conservation Program in will tell you. There is no way you can sneak up on or American Currents, I thought there is no better exam- chase a fish in its own element. Your subject has to ple of how public recreation, endangered species protec- realize you are not a threat and be willing to swim up to tion, and agriculture programs can work together as they you, or, at the very least, ignore you as he or she goes do at Balmorhea State Park in Toyahvale, Texas. about their daily business. The best way I can describe Balmorhea State Park and its refugium were con- how to do this is to move slowly, not to make any structed in 1975 to provide a stable habitat for two sudden moves, and basically act like you are nothing endangered species, the Comanche Springs pupfish more than a floating log. (Cyprinodon elegans) and the Pecos gambusia My first attempts at photographing the Comanche (Gambusia nobilis). The swimming pool is one of the Springs pupfish during the day were not successful. The largest man-made pools in the United States, fed by 22 pupfish were very active and wary. Worse yet were the to 26 million gallons of clear, 76° water from San schools of Mexican tetras (Astynax mexicanus) that Solomon Springs. The pool has a large main circular were swarming around me. -
Federal Register/Vol. 74, No. 27/Wednesday
Federal Register / Vol. 74, No. 27 / Wednesday, February 11, 2009 / Notices 6917 Total Estimated Burden Hours: 84. be made publicly available at any time. Dated: January 29, 2009. Status: New Collection. While you can ask us in your comment Brian A. Millsap, Authority: Section 3507 of the Paperwork to withhold your personal identifying Regional Director, Southwest Region, Fish Reduction Act of 1995, 44 U.S.C. 35, as information from public review, we and Wildlife Service. amended. cannot guarantee that we will be able to [FR Doc. E9–2882 Filed 2–10–09; 8:45 am] Dated: February 5, 2009. do so. BILLING CODE 4310–55–P Lillian L. Deitzer, Permit TE–819477 Departmental Paperwork Reduction Act DEPARTMENT OF THE INTERIOR Officer, Office of the Chief Information Applicant: Malcolm Pirnie, Inc., Austin, Officer. Texas. Fish and Wildlife Service [FR Doc. E9–2863 Filed 2–10–09; 8:45 am] Applicant requests a new permit for BILLING CODE 4210–67–P [FWS–R2–ES–2009–N0003; 20124– research and recovery purposes to 11130000–C4] conduct presence/absence surveys of the following species: lesser long-nosed Endangered and Threatened Wildlife DEPARTMENT OF THE INTERIOR bat (Leptonycteris yerbabuenae), and Plants; 5-Year Reviews of 23 Fish and Wildlife Service Mexican long-nosed bat (Leptonycteris Southwestern Species nivalis), northern aplomado falcon AGENCY: Fish and Wildlife Service, [FWS–R2–ES–2009–0015; 20124–1113– (Falco femoralis), jaguar (Panthera Interior. 0000–F5] onca), and Sneed’s pincushion cactus ACTION: Notice of reviews. Endangered and Threatened Species (Escobaria sneedii) within Texas, New Mexico, and Arizona. Permit Applications SUMMARY: We, the U.S. -
Bringing Back Comanche Springs an Analysis of the History, Hydrogeology, Policy, and Economics
Bringing Back Comanche Springs An Analysis of the History, Hydrogeology, Policy, and Economics Report: 2020-08 December 2020 Authors: Robert E. Mace, Ph.D., P.G. The Meadows Center for Water and the Environment - Texas State University Sharlene Leurig, Texas Water Trade Harry Seely, WestWater Research Douglas A. Wierman, P.G., Blue Creek Consulting LLC A report for the National Fish and Wildlife Foundation, the Fort Stockton Convention and Visitors Bureau, and the Cynthia and George Mitchell Foundation. Front Cover Photo: Historic postcard of the Comanche Spring pool and bath house circa 1947 (postcard from the personal collection of Robert Mace). Back Cover Photo: Beauty pageant at Comanche Springs during the Water Carnival with the Big Chief Spring in the background (taken in 2014 by Sarah Wilson). Bringing Back Comanche Springs An Analysis of the History, Hydrogeology, Policy, and Economics Authors: Robert E. Mace, Ph.D., P.G. Executive Director, The Meadows Center for Water and the Environment - Texas State University Sharlene Leurig, CEO, Texas Water Trade Harry Seely, Principal, WestWater Research Douglas A. Wierman, P.G. President, Blue Creek Consulting LLC December 2020 Report: 2020-08 601 University Drive, San Marcos Texas 78666 512.245.9200 | [email protected] | www.MeadowsWater.org The use of brand names in this report does not indicate endorsement by the authors, the authors’ employers, or the funders. Geoscientist Seals The contents of this report document the work of the following Licensed Texas Geoscientists: The seal appearing on this document was authorized on June 26, 2020 by Robert E. Mace The seal appearing on this document was authorized on June 26, 2020 by Douglas A. -
NRSA 2013/14 Field Operations Manual Appendices (Pdf)
National Rivers and Streams Assessment 2013/14 Field Operations Manual Version 1.1, April 2013 Appendix A: Equipment & Supplies Appendix Equipment A: & Supplies A-1 National Rivers and Streams Assessment 2013/14 Field Operations Manual Version 1.1, April 2013 pendix Equipment A: & Supplies Ap A-2 National Rivers and Streams Assessment 2013/14 Field Operations Manual Version 1.1, April 2013 Base Kit: A Base Kit will be provided to the field crews for all sampling sites that they will go to. Some items are sent in the base kit as extra supplies to be used as needed. Item Quantity Protocol Antibiotic Salve 1 Fish plug Centrifuge tube stand 1 Chlorophyll A Centrifuge tubes (screw-top, 50-mL) (extras) 5 Chlorophyll A Periphyton Clinometer 1 Physical Habitat CST Berger SAL 20 Automatic Level 1 Physical Habitat Delimiter – 12 cm2 area 1 Periphyton Densiometer - Convex spherical (modified with taped V) 1 Physical Habitat D-frame Kick Net (500 µm mesh, 52” handle) 1 Benthics Filteration flask (with silicone stopped and adapter) 1 Enterococci, Chlorophyll A, Periphyton Fish weigh scale(s) 1 Fish plug Fish Voucher supplies 1 pack Fish Voucher Foil squares (aluminum, 3x6”) 1 pack Chlorophyll A Periphyton Gloves (nitrile) 1 box General Graduated cylinder (25 mL) 1 Periphyton Graduated cylinder (250 mL) 1 Chlorophyll A, Periphyton HDPE bottle (1 L, white, wide-mouth) (extras) 12 Benthics, Fish Vouchers HDPE bottle (500 mL, white, wide-mouth) with graduations 1 Periphyton Laboratory pipette bulb 1 Fish Plug Microcentrifuge tubes containing glass beads -
Desert Pupfish Recovery Plan
DESERT PUPFISH RECOVERY PLAN Phoenix, Arizona September 1993 DESERT PUPFISH (Cyprinodon macularius RECOVERY PLAN Prepared by Paul C. Marsh Arizona State University Tempe, Arizona and Donald W. Sada Bishop, California for Region 2 U.S. Fish and Wildlife Service Albuquerque, New Mexico with assistance from Arizona Game and Fish Department and Tonto National Forest September 1993 Approved: Date: 1)caA~4Xge.& Lctct 3 ) DISCLAIMER Recovery plans delineate reasonable actions which are believed to be required to recover and/or protect listed species. Plans are published by the U.S. Fish and Wildlife Service, sometimes prepared with the assistance of recovery teams, contractors, State agencies, and others. Objectives will be attained and any necessary funds made available, subject to budgetary and other constraints affecting the parties involved, as well as the need to address other priorities. Recovery plans do not necessarily represent the views nor the official positions or approvals of any individuals or agencies (involved in the plan formulation), other than the U.S. Fish and Wildlife Service. They represent the official position of the U.S. Fish and Wildlife Service only after they have been signed by the Regional Director or Director as approved Approved recovery plans are subject to modification as dictated by new findings, changes in species status, and the completion of recovery tasks. LITERATURE CITATIONS U.S. Fish and Wildlife Service. 1993. Desert Pupfish Recovery Plan. Phoenix, Arizona. 67 pp. Additional copies may be purchased from: Fish and Wildlife Reference Service: 5430 Grosvenor Lane, Suite 110 Bethesda, Maryland 20814 301/492—6403 or 1—800—582—3421 The fee for the Plan varies depending on the number of pages of the Plan. -
Conserving Texas Biodiversity: Status, Trends, and Conservation Planning for Fishes of Greatest Conservation Need
Final Report for: Conserving Texas Biodiversity: Status, Trends, and Conservation Planning for Fishes of Greatest Conservation Need Authors: Adam E. Cohen1, Gary P. Garrett1, Melissa J. Casarez1, Dean A. Hendrickson1, Benjamin J. Labay1, Tomislav Urban2, John Gentle2, Dennis Wylie3, and David Walling2 Affiliations: 1) University of Texas at Austin, Department of Integrative Biology, Biodiversity Center, Texas Natural History Collections (TNHC), Ichthyology; 2) University of Texas at Austin, Texas Advanced Computing Center (TACC); 3) University of Texas at Austin, Department of Integrative Biology, Center for Computational Biology & Bioinformatics (CCBB) Final Report for: Conserving Texas Biodiversity: Status, Trends, and Conservation Planning for Fishes of Greatest Conservation Need Authors Adam E. Cohen, Gary P. Garrett, Melissa J. Casarez, Dean A. Hendrickson, Benjamin J. Labay, Tomislav Urban, John Gentle, Dennis Wylie, and David Walling Principal Investigator: Dean A. Hendrickson, Curator of Ichthyology, University of Texas Austin, Department of Integrative Biology, Biodiversity Collections (Texas Natural History Collections - TNHC), 10100 Burnet Rd., PRC176EAST/R4000, Austin, Texas 78758-4445; phone: 512-471-9774; email: [email protected] Texas Parks and Wildlife Department Project Leader: Sarah Robertson, River Studies, P.O. Box 1685 or 951 Aquarena Springs Dr., The Rivers Center, San Marcos, TX 78666. Phone 512-754-6844 Funded by: Texas Parks and Wildlife Department through U.S. Fish and Wildlife Service State Wildlife Grant Program, grant TX T-106-1 (CFDA# 15.634) Contract/Project Number: Contract No. 459125 UTA14-001402 Reporting Period: September 1, 2014 through December 31, 2017 Submitted: 3-23-2018 Suggested citation: Cohen, Adam E., Gary P. Garrett, Melissa J. Casarez, Dean A.