Targeting Glutamine Addiction in Gliomas
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Impact of Biopersistent Fibrous Dusts on Glycolysis, Glutaminolysis and Serine Metabolism in A549 Cells
MOLECULAR MEDICINE REPORTS 16: 9233-9241, 2017 Impact of biopersistent fibrous dusts on glycolysis, glutaminolysis and serine metabolism in A549 cells SYBILLE WACHE1, SIMONE HELMIG2, DIRK WALTER2, JOACHIM SCHNEIDER2 and SYBILLE MAZUREK1 1Institute of Veterinary Physiology and Biochemistry; 2Institute and Outpatient Clinic for Occupational and Social Medicine, Justus Liebig University Giessen, D-35392 Giessen, Germany Received March 29, 2017; Accepted August 15, 2017 DOI: 10.3892/mmr.2017.7729 Abstract. The conversion rates of different metabolic examples of which are glass fibers [man‑made vitreous fibers pathways summarized as a metabolic signature mirror the (MMVF)], ceramic fibers (including refractory ceramic physiological functions and the general physiological status of fibers) and, more recently, carbon nanotubes. Epidemiological a cell. The present study compared the impact of crocidolite studies have confirmed an increased risk of lung carcinoma and chrysotile asbestos, glass fibers and multi‑walled carbon and mesothelioma following exposure to asbestos (2,3). Due nanotubes (MWCN) of two different lengths (1-2 µm and to their geological formations, asbestos fibers vary in chemical 5-15 µm) on the conversion rates in glycolysis, glutaminolysis composition, length and diameter. Inhalable asbestos fibers of and serine metabolism of A549 cells. The concentration tested critical dimensions were defined as World Health Organization was 1 µg/cm2 for all fibers. A concentration of 5 µg/cm2 was (WHO; Geneva, Switzerland) fibers: Length ≥5 µm, diameter additionally used for chrysotile and crocidolite, and 25 µg/cm2 <3 µm, length:diameter ratio >3:1 (4). However, this conven- for glass fibers and MWCN. With respect to the inhibitory tion is not a robust criterion by which to categorize fibers as effect on cell proliferation and the extent of metabolic altera- toxic. -
Interplay Between Epigenetics and Metabolism in Oncogenesis: Mechanisms and Therapeutic Approaches
OPEN Oncogene (2017) 36, 3359–3374 www.nature.com/onc REVIEW Interplay between epigenetics and metabolism in oncogenesis: mechanisms and therapeutic approaches CC Wong1, Y Qian2,3 and J Yu1 Epigenetic and metabolic alterations in cancer cells are highly intertwined. Oncogene-driven metabolic rewiring modifies the epigenetic landscape via modulating the activities of DNA and histone modification enzymes at the metabolite level. Conversely, epigenetic mechanisms regulate the expression of metabolic genes, thereby altering the metabolome. Epigenetic-metabolomic interplay has a critical role in tumourigenesis by coordinately sustaining cell proliferation, metastasis and pluripotency. Understanding the link between epigenetics and metabolism could unravel novel molecular targets, whose intervention may lead to improvements in cancer treatment. In this review, we summarized the recent discoveries linking epigenetics and metabolism and their underlying roles in tumorigenesis; and highlighted the promising molecular targets, with an update on the development of small molecule or biologic inhibitors against these abnormalities in cancer. Oncogene (2017) 36, 3359–3374; doi:10.1038/onc.2016.485; published online 16 January 2017 INTRODUCTION metabolic genes have also been identified as driver genes It has been appreciated since the early days of cancer research mutated in some cancers, such as isocitrate dehydrogenase 1 16 17 that the metabolic profiles of tumor cells differ significantly from and 2 (IDH1/2) in gliomas and acute myeloid leukemia (AML), 18 normal cells. Cancer cells have high metabolic demands and they succinate dehydrogenase (SDH) in paragangliomas and fuma- utilize nutrients with an altered metabolic program to support rate hydratase (FH) in hereditary leiomyomatosis and renal cell 19 their high proliferative rates and adapt to the hostile tumor cancer (HLRCC). -
Mice Carrying a Human GLUD2 Gene Recapitulate Aspects of Human Transcriptome and Metabolome Development
Mice carrying a human GLUD2 gene recapitulate aspects of human transcriptome and metabolome development Qian Lia,b,1, Song Guoa,1, Xi Jianga, Jaroslaw Brykc,2, Ronald Naumannd, Wolfgang Enardc,3, Masaru Tomitae, Masahiro Sugimotoe, Philipp Khaitovicha,c,f,4, and Svante Pääboc,4 aChinese Academy of Sciences Key Laboratory of Computational Biology, Chinese Academy of Sciences-Max Planck Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 200031 Shanghai, China; bUniversity of Chinese Academy of Sciences, 100049 Beijing, China; cMax Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany; dMax Planck Institute of Molecular Cell Biology and Genetics, D-01307 Dresden, Germany; eInstitute for Advanced Biosciences, Keio University, 997-0035 Tsuruoka, Yamagata, Japan; and fSkolkovo Institute for Science and Technology, 143025 Skolkovo, Russia Edited by Joshua M. Akey, University of Washington, Seattle, WA, and accepted by the Editorial Board April 1, 2016 (received for review September 28, 2015) Whereas all mammals have one glutamate dehydrogenase gene metabolic flux from glucose and glutamine to lipids by way of the (GLUD1), humans and apes carry an additional gene (GLUD2), TCA cycle (12). which encodes an enzyme with distinct biochemical properties. To investigate the physiological role the GLUD2 gene may We inserted a bacterial artificial chromosome containing the human play in human and ape brains, we generated mice transgenic for GLUD2. GLUD2 gene into mice and analyzed the resulting changes in the a genomic region containing human We compared effects transcriptome and metabolome during postnatal brain development. on gene expression and metabolism during postnatal development Effects were most pronounced early postnatally, and predominantly of the frontal cortex of the brain in these mice and their wild-type genes involved in neuronal development were affected. -
Large Sex Differences in Chicken Behavior and Brain Gene Expression Coincide with Few Differences in Promoter DNA-Methylation
Large Sex Differences in Chicken Behavior and Brain Gene Expression Coincide with Few Differences in Promoter DNA-Methylation Daniel Na¨tt1,2*, Beatrix Agnvall1, Per Jensen1 1 IFM Biology, AVIAN Behaviour and Genomics group, Linko¨ping University, Linko¨ping, Sweden, 2 Department of Clinical and Experimental Medicine, Laboratory of Integrative and Behavioral Neuroscience, Linko¨ping University, Linko¨ping, Sweden Abstract While behavioral sex differences have repeatedly been reported across taxa, the underlying epigenetic mechanisms in the brain are mostly lacking. Birds have previously shown to have only limited dosage compensation, leading to high sex bias of Z-chromosome gene expression. In chickens, a male hyper-methylated region (MHM) on the Z-chromosome has been associated with a local type of dosage compensation, but a more detailed characterization of the avian methylome is limiting our interpretations. Here we report an analysis of genome wide sex differences in promoter DNA-methylation and gene expression in the brain of three weeks old chickens, and associated sex differences in behavior of Red Junglefowl (ancestor of domestic chickens). Combining DNA-methylation tiling arrays with gene expression microarrays we show that a specific locus of the MHM region, together with the promoter for the zinc finger RNA binding protein (ZFR) gene on chromosome 1, is strongly associated with sex dimorphism in gene expression. Except for this, we found few differences in promoter DNA-methylation, even though hundreds of genes were robustly differentially expressed across distantly related breeds. Several of the differentially expressed genes are known to affect behavior, and as suggested from their functional annotation, we found that female Red Junglefowl are more explorative and fearful in a range of tests performed throughout their lives. -
Identification of Transcriptomic Differences Between Lower
International Journal of Molecular Sciences Article Identification of Transcriptomic Differences between Lower Extremities Arterial Disease, Abdominal Aortic Aneurysm and Chronic Venous Disease in Peripheral Blood Mononuclear Cells Specimens Daniel P. Zalewski 1,*,† , Karol P. Ruszel 2,†, Andrzej St˛epniewski 3, Dariusz Gałkowski 4, Jacek Bogucki 5 , Przemysław Kołodziej 6 , Jolanta Szyma ´nska 7 , Bartosz J. Płachno 8 , Tomasz Zubilewicz 9 , Marcin Feldo 9,‡ , Janusz Kocki 2,‡ and Anna Bogucka-Kocka 1,‡ 1 Chair and Department of Biology and Genetics, Medical University of Lublin, 4a Chod´zkiSt., 20-093 Lublin, Poland; [email protected] 2 Chair of Medical Genetics, Department of Clinical Genetics, Medical University of Lublin, 11 Radziwiłłowska St., 20-080 Lublin, Poland; [email protected] (K.P.R.); [email protected] (J.K.) 3 Ecotech Complex Analytical and Programme Centre for Advanced Environmentally Friendly Technologies, University of Marie Curie-Skłodowska, 39 Gł˛ebokaSt., 20-612 Lublin, Poland; [email protected] 4 Department of Pathology and Laboratory Medicine, Rutgers-Robert Wood Johnson Medical School, One Robert Wood Johnson Place, New Brunswick, NJ 08903-0019, USA; [email protected] 5 Chair and Department of Organic Chemistry, Medical University of Lublin, 4a Chod´zkiSt., Citation: Zalewski, D.P.; Ruszel, K.P.; 20-093 Lublin, Poland; [email protected] St˛epniewski,A.; Gałkowski, D.; 6 Laboratory of Diagnostic Parasitology, Chair and Department of Biology and Genetics, Medical University of Bogucki, J.; Kołodziej, P.; Szyma´nska, Lublin, 4a Chod´zkiSt., 20-093 Lublin, Poland; [email protected] J.; Płachno, B.J.; Zubilewicz, T.; Feldo, 7 Department of Integrated Paediatric Dentistry, Chair of Integrated Dentistry, Medical University of Lublin, M.; et al. -
Title Flap Loop of Glud2 Binds to Cbln1 and Induces Presynaptic
Flap loop of GluD2 binds to Cbln1 and induces presynaptic Title differentiation Author(s) Kuroyanagi, Tomoaki; Hirano, Tomoo Biochemical and biophysical research communications (2010), Citation 398(3): 537-541 Issue Date 2010-07-30 URL http://hdl.handle.net/2433/128851 © 2010 Elsevier Inc.; This is not the published version. Please cite only the published version.; この論文は出版社版であり Right ません。引用の際には出版社版をご確認ご利用ください 。 Type Journal Article Textversion author Kyoto University Flap loop of GluD2 binds to Cbln1 and induces presynaptic differentiation Tomoaki Kuroyanagi and Tomoo Hirano Department of Biophysics, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan Department of Biophysics, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan Correspondence should be addressed to: T. Hirano Tel, 81-75-753-4237 Fax, 81-75-753-4227 E-mail, [email protected] (Tomoaki Kuroyanagi); [email protected] (Tomoo Hirano) 1 Abstract Glutamate receptor δ2 (GluD2) is selectively expressed on the postsynaptic spines at parallel-fiber (PF)-Purkinje neuron (PN) synapses. GluD2 knockout mice show a reduced number of PF-PN synapses, suggesting that GluD2 is involved in synapse formation. Recent studies revealed that GluD2 induces presynaptic differentiation in a manner dependent on its N-terminal domain (NTD) through binding of Cbln1 secreted from cerebellar granule neurons. However, the underlying mechanism of the specific binding of the NTD to Cbln1 remains elusive. Here, we have identified the flap loop (Arg321-Trp339) in the NTD of GluD2 (GluD2-NTD) as a crucial region for the binding to Cbln1 and the induction of presynaptic differentiation. -
(KGA) and Its Regulation by Raf-Mek-Erk Signaling in Cancer Cell Metabolism
Structural basis for the allosteric inhibitory mechanism of human kidney-type glutaminase (KGA) and its regulation by Raf-Mek-Erk signaling in cancer cell metabolism K. Thangavelua,1, Catherine Qiurong Pana,b,1, Tobias Karlbergc, Ganapathy Balajid, Mahesh Uttamchandania,d,e, Valiyaveettil Sureshd, Herwig Schülerc, Boon Chuan Lowa,b,2, and J. Sivaramana,2 Departments of aBiological Sciences and dChemistry, National University of Singapore, Singapore 117543; bMechanobiology Institute Singapore, National University of Singapore, Singapore 117411; cStructural Genomics Consortium, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm SE-17177, Sweden; and eDefence Medical and Environmental Research Institute, DSO National Laboratories, Singapore 117510 Edited by John Kuriyan, University of California, Berkeley, CA, and approved March 22, 2012 (received for review October 11, 2011) Besides thriving on altered glucose metabolism, cancer cells un- a substrate for the ubiquitin ligase anaphase-promoting complex/ dergo glutaminolysis to meet their energy demands. As the first cyclosome (APC/C)-Cdh1, linking glutaminolysis to cell cycle enzyme in catalyzing glutaminolysis, human kidney-type glutamin- progression (12). In comparison, function and regulation of LGA is ase isoform (KGA) is becoming an attractive target for small not well studied, although it was recently shown to be linked to p53 pathway (13, 14). Although intense efforts are being made to de- molecules such as BPTES [bis-2-(5 phenylacetamido-1, 2, 4-thiadia- fi fi velop a speci c KGA inhibitor such as BPTES [bis-2-(5-phenyl- zol-2-yl) ethyl sul de], although the regulatory mechanism of KGA acetamido-1, 2, 4-thiadiazol-2-yl) ethyl sulfide] (15), its mechanism remains unknown. -
Multi-Transcriptomic Analysis Points to Early Organelle Dysfunction in 2 Human Astrocytes in Alzheimer’S Disease 3 4 5 Elena Galea1,2,3*, Laura D
medRxiv preprint doi: https://doi.org/10.1101/2021.02.25.21252422; this version posted March 1, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted medRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission. 1 Multi-transcriptomic analysis points to early organelle dysfunction in 2 human astrocytes in Alzheimer’s disease 3 4 5 Elena Galea1,2,3*, Laura D. Weinstock5, Raquel Larramona1,2,4, Alyssa F. Pybus5, Lydia Giménez- 6 Llort1,6, Carole Escartin7, Levi B. Wood5,8* 7 8 9 1. Institut de Neurociències, Universitat Autònoma de Barcelona, Bellaterra, 08193 Barcelona, 10 Spain. 11 2. Departament de Bioquímica, Unitat de Bioquímica, Universitat Autònoma de Barcelona, 12 08193 Barcelona, Spain. 13 3. ICREA, 08010 Barcelona, Spain. 14 4. Current address: Celltec-UB, Departament de Biologia Cel.lular, Fisiologia i Immunologia, 15 Universitat de Barcelona, 08028; Institut de Neurociències, Universitat de Barcelona, 08035, 16 Barcelona, Spain. 17 5. Wallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology, 18 Atlanta, 30332 USA. 19 6. Departament de Psiquiatria i Medicina Forense, Universitat Autònoma de Barcelona, 20 Bellaterra, 08193 Barcelona, Spain. 21 7. Université Paris-Saclay, CEA, CNRS, MIRCen, Laboratoire des Maladies Neurodégénératives, 22 92265, Fontenay-aux-Roses, France. 23 8. George W. Woodruff School of Mechanical Engineering and Parker H. Petit Institute for 24 Bioengineering and Bioscience, Georgia Institute of Technology, Atlanta, 30332 USA. 25 26 27 28 29 30 31 *Corresponding authors 32 [email protected]; +1 (617) 388 9950 33 [email protected]; +34 935 868 143. -
Nerve Tissue-Specific Human Glutamate Dehydrogenase That Is Thermolabile and Highly Regulated by ADP , I *P
Fordham University Masthead Logo DigitalResearch@Fordham Chemistry Faculty Publications Chemistry 1997 Nerve tissue-specific umh an glutamate dehydrogenase that is thermolabile and highly regulated by adp / P. Shashidharan, Donald D. Clarke, Naveed Ahmed, Nicholas Moschonas, and Andreas Plaitakis Department of Neurology, Mount Sinai School of Medicine, New York; Department of Chemistry, Fordham University, Bronx New York, USA; and Department of Biology and School of Health Sciences, University of Crete, Crete, Greece P. Shashidharan Mount Sinai School of Medicine. Department of Neurology, [email protected] Donald Dudley Clarke PhD Fordham University, [email protected] Recommended Citation Shashidharan, P.; Clarke, Donald Dudley PhD; Ahmed, Naveed; and Moschonas, Nicholas, "Nerve tissue-specific umh an glutamate dehydrogenase that is thermolabile and highly regulated by adp / P. Shashidharan, Donald D. Clarke, Naveed Ahmed, Nicholas Moschonas, and Andreas Plaitakis Department of Neurology, Mount Sinai School of Medicine, New York; Department of Chemistry, Fordham University, Bronx New York, USA; and Department of Biology and School of Health Sciences, University of Crete, Crete, Greece" (1997). Chemistry Faculty Publications. 13. https://fordham.bepress.com/chem_facultypubs/13 This Article is brought to you for free and open access by the Chemistry at DigitalResearch@Fordham. It has been accepted for inclusion in Chemistry Faculty Publications by an authorized administrator of DigitalResearch@Fordham. For more information, please contact [email protected]. Naveed Ahmed Mount Sinai School of Medicine. Department of Neurology Nicholas Moschonas University of Crete. Department of Biology Follow this and additional works at: https://fordham.bepress.com/chem_facultypubs Part of the Biochemistry Commons Journal of Neurochemistry Lippincott-Raven Publishers, Philadelphia © 1997 International Society for Neurochemistry Nerve Tissue-Specific Human Glutamate Dehydrogenase that Is Thermolabile and Highly Regulated by ADP , I *P. -
Maturation, Refinement, and Serotonergic Modulation of Cerebellar Cortical Circuits in Normal Development and in Murine Models of Autism
Hindawi Neural Plasticity Volume 2017, Article ID 6595740, 14 pages https://doi.org/10.1155/2017/6595740 Review Article Maturation, Refinement, and Serotonergic Modulation of Cerebellar Cortical Circuits in Normal Development and in Murine Models of Autism 1,2 3 2 1,2,4 Eriola Hoxha, Pellegrino Lippiello, Bibiana Scelfo, Filippo Tempia, 2 3 Mirella Ghirardi, and Maria Concetta Miniaci 1Neuroscience Institute Cavalieri Ottolenghi (NICO), Torino, Italy 2Department of Neuroscience, University of Torino, Torino, Italy 3Department of Pharmacy, University of Naples Federico II, Naples, Italy 4National Institute of Neuroscience (INN), Torino, Italy Correspondence should be addressed to Eriola Hoxha; [email protected] Received 28 April 2017; Revised 6 July 2017; Accepted 25 July 2017; Published 15 August 2017 Academic Editor: J. Michael Wyss Copyright © 2017 Eriola Hoxha et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The formation of the complex cerebellar cortical circuits follows different phases, with initial synaptogenesis and subsequent processes of refinement guided by a variety of mechanisms. The regularity of the cellular and synaptic organization of the cerebellar cortex allowed detailed studies of the structural plasticity mechanisms underlying the formation of new synapses and retraction of redundant ones. For the attainment of the monoinnervation of the Purkinje cell by a single climbing fiber, several signals are involved, including electrical activity, contact signals, homosynaptic and heterosynaptic interaction, calcium transients, postsynaptic receptors, and transduction pathways. An important role in this developmental program is played by serotonergic projections that, acting on temporally and spatially regulated postsynaptic receptors, induce and modulate the phases of synaptic formation and maturation. -
Mice Carrying a Human GLUD2 Gene Recapitulate Aspects of Human Transcriptome and Metabolome Development
Mice carrying a human GLUD2 gene recapitulate aspects of human transcriptome and metabolome development Qian Lia,b,1, Song Guoa,1, Xi Jianga, Jaroslaw Brykc,2, Ronald Naumannd, Wolfgang Enardc,3, Masaru Tomitae, Masahiro Sugimotoe, Philipp Khaitovicha,c,f,4, and Svante Pääboc,4 aChinese Academy of Sciences Key Laboratory of Computational Biology, Chinese Academy of Sciences-Max Planck Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 200031 Shanghai, China; bUniversity of Chinese Academy of Sciences, 100049 Beijing, China; cMax Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany; dMax Planck Institute of Molecular Cell Biology and Genetics, D-01307 Dresden, Germany; eInstitute for Advanced Biosciences, Keio University, 997-0035 Tsuruoka, Yamagata, Japan; and fSkolkovo Institute for Science and Technology, 143025 Skolkovo, Russia Edited by Joshua M. Akey, University of Washington, Seattle, WA, and accepted by the Editorial Board April 1, 2016 (received for review September 28, 2015) Whereas all mammals have one glutamate dehydrogenase gene metabolic flux from glucose and glutamine to lipids by way of the (GLUD1), humans and apes carry an additional gene (GLUD2), TCA cycle (12). which encodes an enzyme with distinct biochemical properties. To investigate the physiological role the GLUD2 gene may We inserted a bacterial artificial chromosome containing the human play in human and ape brains, we generated mice transgenic for GLUD2. GLUD2 gene into mice and analyzed the resulting changes in the a genomic region containing human We compared effects transcriptome and metabolome during postnatal brain development. on gene expression and metabolism during postnatal development Effects were most pronounced early postnatally, and predominantly of the frontal cortex of the brain in these mice and their wild-type genes involved in neuronal development were affected. -
Dependent Carboxylation of Α-Ketoglutarate to Citrate to Support Cell Growth and Viability
Hypoxia promotes isocitrate dehydrogenase- dependent carboxylation of α-ketoglutarate to citrate to support cell growth and viability David R. Wisea,b,1, Patrick S. Warda,b,1, Jessica E. S. Shayb,c, Justin R. Crossa, Joshua J. Gruberb, Uma M. Sachdevab, Jesse M. Plattb, Raymond G. DeMatteoa, M. Celeste Simonb,c, and Craig B. Thompsona,2 aCancer Biology and Genetics Program, Memorial Sloan-Kettering Cancer Center, New York, NY 10065; and bAbramson Cancer Center, Perelman School of Medicine, and cHoward Hughes Medical Institute, University of Pennsylvania, Philadelphia, PA 19104 Contributed by Craig B. Thompson, October 27, 2011 (sent for review October 12, 2011) Citrate is a critical metabolite required to support both mitochon- 10). Stabilization of the labile HIF1α subunit occurs in hypoxia. drial bioenergetics and cytosolic macromolecular synthesis. When It can also occur in normoxia through several mechanisms in- cells proliferate under normoxic conditions, glucose provides the cluding loss of the von Hippel-Lindau tumor suppressor (VHL), acetyl-CoA that condenses with oxaloacetate to support citrate a common occurrence in renal carcinoma (11). Although hypoxia production. Tricarboxylic acid (TCA) cycle anaplerosis is maintained and/or HIF1α stabilization is a common feature of multiple primarily by glutamine. Here we report that some hypoxic cells are cancers, to date the source of citrate in the setting of hypoxia or able to maintain cell proliferation despite a profound reduction in HIF activation has not been determined. glucose-dependent citrate production. In these hypoxic cells, gluta- Here, we study the sources of hypoxic citrate synthesis in a mine becomes a major source of citrate.