Diversity, Abundance, and Distribution of Wood-Decay Fungi in Major Parks of Hong Kong
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5-3-1-Progettobrisbane.Pdf
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/228325996 Evaluation of an antagonistic Trichoderma strain for reducing the rate of wood decomposition by the white rot fungus Phellinus noxius ARTICLE in BIOLOGICAL CONTROL · MAY 2012 Impact Factor: 1.64 · DOI: 10.1016/j.biocontrol.2012.01.016 CITATIONS READS 5 425 5 AUTHORS, INCLUDING: Francis Willis Matthew Robert Schwarze Craig Hallam Empa - Swiss Federal Laboratories for Mate… Independent Researcher 89 PUBLICATIONS 1,290 CITATIONS 3 PUBLICATIONS 9 CITATIONS SEE PROFILE SEE PROFILE Mark Schubert Empa - Swiss Federal Laboratories for Mate… 26 PUBLICATIONS 159 CITATIONS SEE PROFILE Available from: Mark Schubert Retrieved on: 30 March 2016 Biological Control 61 (2012) 160–168 Contents lists available at SciVerse ScienceDirect Biological Control journal homepage: www.elsevier.com/locate/ybcon Evaluation of an antagonistic Trichoderma strain for reducing the rate of wood decomposition by the white rot fungus Phellinus noxius ⇑ Francis W.M.R. Schwarze a, , Frederick Jauss a, Chris Spencer b, Craig Hallam b, Mark Schubert a a EMPA, Swiss Federal Laboratories for Materials Science and Technology, Wood Laboratory, Section Wood Protection and Biotechnology, Lerchenfeldstrasse. 5, CH-9014 St. Gallen, Switzerland b ENSPEC, Unit 2/13 Viewtech Place, Rowville, Victoria 3178, Australia highlights graphical abstract " Antagonism of Trichoderma species against Phellinus noxius varied in the in vitro studies. " Weight losses by P. noxius were higher in angiospermous than gymnospermous wood. " Biocontrol of P. noxius depends on the specific Trichoderma strain and its host. article info abstract Article history: The objective of these in vitro studies was to identify a Trichoderma strain that reduces the rate of wood Received 31 October 2011 decomposition by the white rot fungus Phellinus noxius and Ganoderma australe. -
Produkcija Lignocelulolitičnih Encimov Z Glivami Bele Trohnobe Na Trdnem Odpadku Iz Papirne Industrije
UNIVERZA V LJUBLJANI BIOTEHNIŠKA FAKULTETA ŠTUDIJ MIKROBIOLOGIJE Katja VRABEC PRODUKCIJA LIGNOCELULOLITIČNIH ENCIMOV Z GLIVAMI BELE TROHNOBE NA TRDNEM ODPADKU IZ PAPIRNE INDUSTRIJE MAGISTRSKO DELO Magistrski študij - 2. stopnja Mikrobiologija Ljubljana, 2016 UNIVERZA V LJUBLJANI BIOTEHNIŠKA FAKULTETA ŠTUDIJ MIKROBIOLOGIJE Katja VRABEC PRODUKCIJA LIGNOCELULOLITIČNIH ENCIMOV Z GLIVAMI BELE TROHNOBE NA TRDNEM ODPADKU IZ PAPIRNE INDUSTRIJE MAGISTRSKO DELO Magistrski študij - 2. stopnja Mikrobiologija LIGNOCELLULOLYTIC ENZYME PRODUCTION WITH WHITE ROT FUNGI ON SOLID WASTE FROM PULP AND PAPER INDUSTRY M. SC. THESIS Master Study Programmes: Field Microbiology Ljubljana, 2016 Vrabec K. Produkcija lignocelulolitičnih encimov z glivami bele trohnobe na trdnem odpadku iz papirne industrije. II Mag. delo (Du2). Ljubljana, Univ. v Ljubljani, Biotehniška fakulteta, Študij mikrobiologije, 2016 Magistrsko delo je zaključek magistrskega študijskega programa 2. stopnje Mikrobiologija. Delo je bilo opravljeno na Katedri za mikrobiologijo in mikrobno biotehnologijo, Oddelek za zootehniko, Biotehniška fakulteta, Univerza v Ljubljani; Mycomedica d.o.o (Podkoren 72, 4280 Kranjska Gora); Inštitut za celulozo in papir (Bogišičeva 8, 1000 Ljubljana). Komisija za študij 1. in 2. stopnje je za mentorico magistrskega dela imenovala doc. dr. Mašo Vodovnik in za recenzentko prof. dr. Romano Marinšek Logar. Mentorica: doc. dr. Maša Vodovnik Recenzentka: prof. dr. Romana Marinšek Logar Komisija za oceno in zagovor: Predsednik: doc. dr. Tomaž ACCETTO Univerza v Ljubljani, -
Diversity of Polyporales in the Malay Peninsular and the Application of Ganoderma Australe (Fr.) Pat
DIVERSITY OF POLYPORALES IN THE MALAY PENINSULAR AND THE APPLICATION OF GANODERMA AUSTRALE (FR.) PAT. IN BIOPULPING OF EMPTY FRUIT BUNCHES OF ELAEIS GUINEENSIS MOHAMAD HASNUL BIN BOLHASSAN FACULTY OF SCIENCE UNIVERSITY OF MALAYA KUALA LUMPUR 2013 DIVERSITY OF POLYPORALES IN THE MALAY PENINSULAR AND THE APPLICATION OF GANODERMA AUSTRALE (FR.) PAT. IN BIOPULPING OF EMPTY FRUIT BUNCHES OF ELAEIS GUINEENSIS MOHAMAD HASNUL BIN BOLHASSAN THESIS SUBMITTED IN FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY INSTITUTE OF BIOLOGICAL SCIENCES FACULTY OF SCIENCE UNIVERSITY OF MALAYA KUALA LUMPUR 2013 UNIVERSITI MALAYA ORIGINAL LITERARY WORK DECLARATION Name of Candidate: MOHAMAD HASNUL BIN BOLHASSAN (I.C No: 830416-13-5439) Registration/Matric No: SHC080030 Name of Degree: DOCTOR OF PHILOSOPHY Title of Project Paper/Research Report/Disertation/Thesis (“this Work”): DIVERSITY OF POLYPORALES IN THE MALAY PENINSULAR AND THE APPLICATION OF GANODERMA AUSTRALE (FR.) PAT. IN BIOPULPING OF EMPTY FRUIT BUNCHES OF ELAEIS GUINEENSIS. Field of Study: MUSHROOM DIVERSITY AND BIOTECHNOLOGY I do solemnly and sincerely declare that: 1) I am the sole author/writer of this work; 2) This Work is original; 3) Any use of any work in which copyright exists was done by way of fair dealing and for permitted purposes and any excerpt or extract from, or reference to or reproduction of any copyright work has been disclosed expressly and sufficiently and the title of the Work and its authorship have been acknowledge in this Work; 4) I do not have any actual -
Phylogenetic Classification of Trametes
TAXON 60 (6) • December 2011: 1567–1583 Justo & Hibbett • Phylogenetic classification of Trametes SYSTEMATICS AND PHYLOGENY Phylogenetic classification of Trametes (Basidiomycota, Polyporales) based on a five-marker dataset Alfredo Justo & David S. Hibbett Clark University, Biology Department, 950 Main St., Worcester, Massachusetts 01610, U.S.A. Author for correspondence: Alfredo Justo, [email protected] Abstract: The phylogeny of Trametes and related genera was studied using molecular data from ribosomal markers (nLSU, ITS) and protein-coding genes (RPB1, RPB2, TEF1-alpha) and consequences for the taxonomy and nomenclature of this group were considered. Separate datasets with rDNA data only, single datasets for each of the protein-coding genes, and a combined five-marker dataset were analyzed. Molecular analyses recover a strongly supported trametoid clade that includes most of Trametes species (including the type T. suaveolens, the T. versicolor group, and mainly tropical species such as T. maxima and T. cubensis) together with species of Lenzites and Pycnoporus and Coriolopsis polyzona. Our data confirm the positions of Trametes cervina (= Trametopsis cervina) in the phlebioid clade and of Trametes trogii (= Coriolopsis trogii) outside the trametoid clade, closely related to Coriolopsis gallica. The genus Coriolopsis, as currently defined, is polyphyletic, with the type species as part of the trametoid clade and at least two additional lineages occurring in the core polyporoid clade. In view of these results the use of a single generic name (Trametes) for the trametoid clade is considered to be the best taxonomic and nomenclatural option as the morphological concept of Trametes would remain almost unchanged, few new nomenclatural combinations would be necessary, and the classification of additional species (i.e., not yet described and/or sampled for mo- lecular data) in Trametes based on morphological characters alone will still be possible. -
Comparative and Population Genomics Landscape of Phellinus Noxius
bioRxiv preprint doi: https://doi.org/10.1101/132712; this version posted September 17, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Comparative and population genomics landscape of Phellinus noxius: 2 a hypervariable fungus causing root rot in trees 3 4 Chia-Lin Chung¶1,2, Tracy J. Lee3,4,5, Mitsuteru Akiba6, Hsin-Han Lee1, Tzu-Hao 5 Kuo3, Dang Liu3,7, Huei-Mien Ke3, Toshiro Yokoi6, Marylette B Roa3,8, Meiyeh J Lu3, 6 Ya-Yun Chang1, Pao-Jen Ann9, Jyh-Nong Tsai9, Chien-Yu Chen10, Shean-Shong 7 Tzean1, Yuko Ota6,11, Tsutomu Hattori6, Norio Sahashi6, Ruey-Fen Liou1,2, Taisei 8 Kikuchi12 and Isheng J Tsai¶3,4,5,7 9 10 1Department of Plant Pathology and Microbiology, National Taiwan University, Taiwan 11 2Master Program for Plant Medicine, National Taiwan University, Taiwan 12 3Biodiversity Research Center, Academia Sinica, Taipei, Taiwan 13 4Biodiversity Program, Taiwan International Graduate Program, Academia Sinica and 14 National Taiwan Normal University 15 5Department of Life Science, National Taiwan Normal University 16 6Department of Forest Microbiology, Forestry and Forest Products Research Institute, 17 Tsukuba, Japan 18 7Genome and Systems Biology Degree Program, National Taiwan University and Academia 19 Sinica, Taipei, Taiwan 20 8Philippine Genome Center, University of the Philippines, Diliman, Quezon City, Philippines 21 1101 -
Fungal Diversity in the Mediterranean Area
Fungal Diversity in the Mediterranean Area • Giuseppe Venturella Fungal Diversity in the Mediterranean Area Edited by Giuseppe Venturella Printed Edition of the Special Issue Published in Diversity www.mdpi.com/journal/diversity Fungal Diversity in the Mediterranean Area Fungal Diversity in the Mediterranean Area Editor Giuseppe Venturella MDPI • Basel • Beijing • Wuhan • Barcelona • Belgrade • Manchester • Tokyo • Cluj • Tianjin Editor Giuseppe Venturella University of Palermo Italy Editorial Office MDPI St. Alban-Anlage 66 4052 Basel, Switzerland This is a reprint of articles from the Special Issue published online in the open access journal Diversity (ISSN 1424-2818) (available at: https://www.mdpi.com/journal/diversity/special issues/ fungal diversity). For citation purposes, cite each article independently as indicated on the article page online and as indicated below: LastName, A.A.; LastName, B.B.; LastName, C.C. Article Title. Journal Name Year, Article Number, Page Range. ISBN 978-3-03936-978-2 (Hbk) ISBN 978-3-03936-979-9 (PDF) c 2020 by the authors. Articles in this book are Open Access and distributed under the Creative Commons Attribution (CC BY) license, which allows users to download, copy and build upon published articles, as long as the author and publisher are properly credited, which ensures maximum dissemination and a wider impact of our publications. The book as a whole is distributed by MDPI under the terms and conditions of the Creative Commons license CC BY-NC-ND. Contents About the Editor .............................................. vii Giuseppe Venturella Fungal Diversity in the Mediterranean Area Reprinted from: Diversity 2020, 12, 253, doi:10.3390/d12060253 .................... 1 Elias Polemis, Vassiliki Fryssouli, Vassileios Daskalopoulos and Georgios I. -
Published Version
8 Damage to stems, branches and twigs of broadleaf woody plants M. Kacprzyk, I. Matsiakh, D.L. Musolin, A.V. Selikhovkin, Y.N. Baranchikov, D. Burokiene, T. Cech, V. Talgø, A.M. Vettraino, A. Vannini, A. Zambounis and S. Prospero 8.1. Root and stem rot Description: External, aboveground symptoms on individual trees are variable and may include suppressed growth, reduced vigour, discoloured or smaller than average-sized foliage, premature leaf shedding, branch dieback, crown thinning, bleeding lesions on the lower stem and root collar, wilting and eventual death of trees. It is common for root and butt rots to remain unnoticed until annual or perennial (conks) fruiting bodies appear on branches or the main trunk. Possible cause of damage: Oomycetes (water moulds: Figs. 8.1.1 – 8.1.3); Fungi: Basidiomycota (Figs. 8.1.4 – 8.1.7) and Ascomycota (Fig. 8.1.8). Fig. 8.1.1. Root collar of European beech Fig. 8.1.2. Stem of grey alder (Alnus (Fagus sylvatica) with a bleeding bark lesion incana) with bark lesion caused by an caused by an Oomycete (Phytophthora Oomycete (Phytophthora x alni). Tyrol, cambivora). Bavaria, Germany, TC. Austria, TC. ©CAB International 2017. Field Guide for the Identification of Damage on Woody Sentinel Plants (eds A. Roques, M. Cleary, I. Matsiakh and R. Eschen) Damage to stems, branches and twigs of broadleaf woody plants 105 Fig. 8.1.3. European chestnut (Castanea Fig. 8.1.4. Collar of European beech sativa) showing bark lesion caused by an (Fagus sylvatica) with fungal fruiting Oomycete (Phytophthora cinnamomi). bodies (Polyporus squamosus). -
Improved Efficiency in Screening.Pdf
PLEASE NOTE! THIS IS SELF-ARCHIVED FINAL-DRAFT VERSION OF THE ORIGINAL ARTICLE To cite this Article: Kinnunen, A. Maijala, P., Järvinen, P. & Hatakka, A. 2017. Improved efficiency in screening for lignin-modifying peroxidases and laccases of basidiomycetes. Current Biotechnology 6 (2), 105–115. doi: 10.2174/2211550105666160330205138 URL:http://www.eurekaselect.com/140791/article Send Orders for Reprints to [email protected] Current Biotechnology, 2016, 5, 000-000 1 RESEARCH ARTICLE Improved Efficiency in Screening for Lignin-Modifying Peroxidases and Laccases of Basidiomycetes Anu Kinnunen1, Pekka Maijala2, Päivi Järvinen3 and Annele Hatakka1,* aDepartment of Food and Environmental Sciences, Faculty of Agriculture and Forestry, University of Helsinki, Finland; bSchool of Food and Agriculture, Applied University of Seinäjoki, Seinäjoki, Finland; cCentre for Drug Research, Division of Pharmaceutical Biosciences, Faculty of Pharmacy, University of Helsinki, Finland Abstract: Background: Wood rotting white-rot and litter-decomposing basidiomycetes form a huge reservoir of oxidative enzymes, needed for applications in the pulp and paper and textile industries and for bioremediation. Objective: The aim was (i) to achieve higher throughput in enzyme screening through miniaturization and automatization of the activity assays, and (ii) to discover fungi which produce efficient oxidoreductases for industrial purposes. Methods: Miniaturized activity assays mostly using dyes as substrate were carried Annele Hatakka A R T I C L E H I S T O R Y out for lignin peroxidase, versatile peroxidase, manganese peroxidase and laccase. Received: November 24, 2015 Methods were validated and 53 species of basidiomycetes were screened for lignin modifying enzymes Revised: March 15, 2016 Accepted: March 29, 2016 when cultivated in liquid mineral, soy, peptone and solid state oat husk medium. -
Hen-Of-The-Woods Grifola Frondosa
hen-of-the-woods Grifola frondosa Kingdom: Fungi Division/Phylum: Basidiomycota Class: Agaricomycetes Order: Polyporales Family: Meripilaceae ILLINOIS STATUS common, native FEATURES The body of a fungus (mycelium) is made up of strands called mycelia. The mycelium grows within the soil, a dead tree or other object and is rarely seen. The fruiting body that produces spores is generally present for only a short period of time but is the most familiar part of the fungus to people. The hen-of-the-woods grows in clumps of fan-shaped caps that overlap and are attached to the stalk. The gray-brown cap’s upper surface is smooth or hairy. The cap is attached at one side to a very large stalk. The pores under the cap are white or yellow. The cap may be as much as three and one-fourth inches wide. BEHAVIORS Hen-of-the-woods may be found statewide in Illinois. Its clusters develop in a single mass or in groups around stumps and trees. Unlike plants, fungi do not have roots, stems, leaves, flowers or seeds. Hen-of-the-woods must absorb nutrients and water from the objects it grows in. Spores are produced in the fall. The spores provide a means of reproduction, dispersal and survival in poor conditions. Spore production occurs when conditions are favorable, generally with warm temperatures and ample moisture. HABITATS Aquatic Habitats bottomland forests; peatlands Woodland Habitats bottomland forests; coniferous forests; southern Illinois lowlands; upland deciduous forests Prairie and Edge Habitats edge © Illinois Department of Natural Resources. 2016. Biodiversity of Illinois. -
9B Taxonomy to Genus
Fungus and Lichen Genera in the NEMF Database Taxonomic hierarchy: phyllum > class (-etes) > order (-ales) > family (-ceae) > genus. Total number of genera in the database: 526 Anamorphic fungi (see p. 4), which are disseminated by propagules not formed from cells where meiosis has occurred, are presently not grouped by class, order, etc. Most propagules can be referred to as "conidia," but some are derived from unspecialized vegetative mycelium. A significant number are correlated with fungal states that produce spores derived from cells where meiosis has, or is assumed to have, occurred. These are, where known, members of the ascomycetes or basidiomycetes. However, in many cases, they are still undescribed, unrecognized or poorly known. (Explanation paraphrased from "Dictionary of the Fungi, 9th Edition.") Principal authority for this taxonomy is the Dictionary of the Fungi and its online database, www.indexfungorum.org. For lichens, see Lecanoromycetes on p. 3. Basidiomycota Aegerita Poria Macrolepiota Grandinia Poronidulus Melanophyllum Agaricomycetes Hyphoderma Postia Amanitaceae Cantharellales Meripilaceae Pycnoporellus Amanita Cantharellaceae Abortiporus Skeletocutis Bolbitiaceae Cantharellus Antrodia Trichaptum Agrocybe Craterellus Grifola Tyromyces Bolbitius Clavulinaceae Meripilus Sistotremataceae Conocybe Clavulina Physisporinus Trechispora Hebeloma Hydnaceae Meruliaceae Sparassidaceae Panaeolina Hydnum Climacodon Sparassis Clavariaceae Polyporales Gloeoporus Steccherinaceae Clavaria Albatrellaceae Hyphodermopsis Antrodiella -
Short Title: Lentinus, Polyporellus, Neofavolus
In Press at Mycologia, preliminary version published on February 6, 2015 as doi:10.3852/14-084 Short title: Lentinus, Polyporellus, Neofavolus Phylogenetic relationships and morphological evolution in Lentinus, Polyporellus and Neofavolus, emphasizing southeastern Asian taxa Jaya Seelan Sathiya Seelan Biology Department, Clark University, 950 Main Street, Worcester, Massachusetts 01610, and Institute for Tropical Biology and Conservation (ITBC), Universiti Malaysia Sabah, 88400 Kota Kinabalu, Sabah, Malaysia Alfredo Justo Laszlo G. Nagy Biology Department, Clark University, 950 Main Street, Worcester, Massachusetts 01610 Edward A. Grand Mahidol University International College (Science Division), 999 Phuttamonthon, Sai 4, Salaya, Nakorn Pathom 73170, Thailand Scott A. Redhead ECORC, Science & Technology Branch, Agriculture & Agri-Food Canada, CEF, Neatby Building, Ottawa, Ontario, K1A 0C6 Canada David Hibbett1 Biology Department, Clark University, 950 Main Street Worcester, Massachusetts 01610 Abstract: The genus Lentinus (Polyporaceae, Basidiomycota) is widely documented from tropical and temperate forests and is taxonomically controversial. Here we studied the relationships between Lentinus subg. Lentinus sensu Pegler (i.e. sections Lentinus, Tigrini, Dicholamellatae, Rigidi, Lentodiellum and Pleuroti and polypores that share similar morphological characters). We generated sequences of internal transcribed spacers (ITS) and Copyright 2015 by The Mycological Society of America. partial 28S regions of nuc rDNA and genes encoding the largest subunit of RNA polymerase II (RPB1), focusing on Lentinus subg. Lentinus sensu Pegler and the Neofavolus group, combined these data with sequences from GenBank (including RPB2 gene sequences) and performed phylogenetic analyses with maximum likelihood and Bayesian methods. We also evaluated the transition in hymenophore morphology between Lentinus, Neofavolus and related polypores with ancestral state reconstruction. -
Polyporales, Basidiomycota), a New Polypore Species and Genus from Finland
Ann. Bot. Fennici 54: 159–167 ISSN 0003-3847 (print) ISSN 1797-2442 (online) Helsinki 18 April 2017 © Finnish Zoological and Botanical Publishing Board 2017 Caudicicola gracilis (Polyporales, Basidiomycota), a new polypore species and genus from Finland Heikki Kotiranta1,*, Matti Kulju2 & Otto Miettinen3 1) Finnish Environment Institute, Natural Environment Centre, P.O. Box 140, FI-00251 Helsinki, Finland (*corresponding author’s e-mail: [email protected]) 2) Biodiversity Unit, P.O. Box 3000, FI-90014 University of Oulu, Finland 3) Finnish Museum of Natural History, Botanical Museum, P.O. Box 7, FI-00014 University of Helsinki, Finland Received 10 Jan. 2017, final version received 23 Mar. 2017, accepted 27 Mar. 2017 Kotiranta H., Kulju M. & Miettinen O. 2017: Caudicicola gracilis (Polyporales, Basidiomycota), a new polypore species and genus from Finland. — Ann. Bot. Fennici 54: 159–167. A new monotypic polypore genus, Caudicicola Miettinen, Kotir. & Kulju, is described for the new species C. gracilis Kotir., Kulju & Miettinen. The species was collected in central Finland from Picea abies and Pinus sylvestris stumps, where it grew on undersides of stumps and roots. Caudicicola gracilis is characterized by very fragile basidiocarps, monomitic hyphal structure with clamps, short and wide tramal cells, smooth ellipsoid spores, basidia with long sterigmata and conidiogenous areas in the margins of the basidiocarp producing verrucose, slightly thick-walled conidia. The genus belongs to the residual polyporoid clade of the Polyporales in the vicinity of Steccherinaceae, but has no known close relatives. Introduction sis taxicola, Pycnoporellus fulgens and its suc- cessional predecessor Fomitopsis pinicola, and The species described here was found when deciduous tree trunks had such seldom collected Heino Kulju, the brother of the second author, species as Athelopsis glaucina (on Salix) and was making a forest road for tractors.