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Selection, Constraint, and Adaptation in the Visual Genes of Neotropical Cichlid Fishes and Other Vertebrates
SELECTION, CONSTRAINT, AND ADAPTATION IN THE VISUAL GENES OF NEOTROPICAL CICHLID FISHES AND OTHER VERTEBRATES by Frances Elisabeth Hauser A thesis submitted in conformity with the requirements for the degree of Doctor of Philosophy Ecology and Evolutionary Biology University of Toronto © Copyright by Frances E. Hauser 2018 SELECTION, CONSTRAINT, AND ADAPTATION IN THE VISUAL GENES OF NEOTROPICAL CICHLID FISHES AND OTHER VERTEBRATES Frances E. Hauser Doctor of Philosophy, 2018 Department of Ecology and Evolutionary Biology University of Toronto 2018 ABSTRACT The visual system serves as a direct interface between an organism and its environment. Studies of the molecular components of the visual transduction cascade, in particular visual pigments, offer an important window into the relationship between genetic variation and organismal fitness. In this thesis, I use molecular evolutionary models as well as protein modeling and experimental characterization to assess the role of variable evolutionary rates on visual protein function. In Chapter 2, I review recent work on the ecological and evolutionary forces giving rise to the impressive variety of adaptations found in visual pigments. In Chapter 3, I use interspecific vertebrate and mammalian datasets of two visual genes (RH1 or rhodopsin, and RPE65, a retinoid isomerase) to assess different methods for estimating evolutionary rate across proteins and the reliability of inferring evolutionary conservation at individual amino acid sites, with a particular emphasis on sites implicated in impaired protein function. ii In Chapters 4, and 5, I narrow my focus to devote particular attention to visual pigments in Neotropical cichlids, a highly diverse clade of fishes distributed across South and Central America. -
Mesonauta Egregius „Orinoko-Delta“ 3
„Goldene“ Flaggenbuntbarsche: Anmerkungen zur Pflege und Zucht von Mesonauta egregius „Orinoko-Delta“ 3. Teil Roland F. Fischer In dieser Situation, in der die jungen Flaggenbunt- barsche für eine kurze Zeit vor dem Verlöschen der Aquarienbeleuchtung in ihrer Ernährungsweise Verhalten der Jungfische vom „Räuber“ zum „Weidefisch“ wechseln, Die von der Wasseroberfläche abgesaugten Jung- suchen beide Elternfische erneut Kontakt zur Brut. fische werden nun von beiden Elternfischen an eine Sie positionieren sich nun nicht mehr unterhalb der bis knapp unter die Wasseroberfläche reichende Jungfische, sondern nur wenige Zentimeter entfernt Moorkienwurzel verbracht. Dort richten sich die vom ausgewählten „Schlafplatz“ in unmittelbarer jungen Mesonauta wie ehemals als Larven, den Nähe zu der „hyperaktiv“ wimmelnden Schar. Kopf nach oben, am Substrat aus. Sie liegen dabei Diese direkte körperliche Nähe zu den „weiden- der Wurzel so eng an, dass der Eindruck entsteht, den“ Jungfischen bewirkt, dass die Brut ohne die Brut würde mittels larvaler Kopfdrüsen am großen Energieaufwand zwischen senkrechtstehen- Substrat kleben. Während Weidner (1996) noch der Wurzel und Elternfisch wechseln kann. An bei- aktive Kopfdrüsen bei seiner Mesonauta-insignis- den „Substraten“ wird gleichermaßen heftig „ge- Brut feststellen konnte, hat bisher noch keine M.- zerrt“. Dabei unterscheidet die Brut nicht, ob es egregius-Brut in den Aquarien des Autos länger als sich um Aufwuchs an einer Moorkienwurzel oder ein paar Augenblicke diese larvale Körperhaltung die Körperoberfläche eines Elternteils handelt. Das aufrecht erhalten. Im Gegenteil, mit zunehmender „Beweiden“ erfolgt für den außenstehenden Beo- Individuendichte im „Schlafpulk“ nimmt die Un- bachter ungerichtet und zufällig. Zudem wechselt ruhe zu, die Jungfische wandern, immer noch ver- die Brut unregelmäßig zwischen beiden Substraten, tikal ausgerichtet, am Substrat sukzessive nach ohne irgendeine Präferenz gegenüber einer der oben, um schließlich alle wieder in die Horizontale Futterquellen zu zeigen. -
Mesonauta Festivum
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Portal de Revistas de la Universidad de Panamá NOTA SOBRE LA PRESENCIA DEL FESTIVO Mesonauta festivus (Heckel, 1840) EN EL LAGO GATÚN, PANAMÁ ARTICULO DE DIVULGACIÓN Rigoberto González G. Sociedad Panameña de Malacología, Apartado 6 – 1836, El Dorado, Panamá, República de Panamá. e- mail: [email protected] RESUMEN En este trabajo se reporta la presencia de un pez ornamental exótico, el festivo o cíclido bandera, Mesonauta festivus (Heckel 1840), en las aguas del Lago Gatún, Canal de Panamá. Igualmente se expone una hipótesis sobre su introducción, así como, observaciones y notas preliminares de su comportamiento y distribución en estas aguas canaleras. PALABRAS CLAVES Mesonauta festivus, reporte, introducción, Lago Gatún, Canal de Panamá. ABSTRACT This paper report the presence of an exotic and ornamental fish, the festivum or flag cichlid Mesonauta festivus (Heckel 1840) introduced into the Gatún Lake waters in the Panamá Canal. Also we present preliminary observations related to their behavoir and distribution in this ecosystem, as well as, a hypothesis to explain their introduction. KEYWORDS Mesonauta festivus; report, introduction, Gatún Lake, Panamá Canal. Tecnociencia, Vol. 8, Nº 1 183 INTRODUCCIÓN Durante años, nuestro país ha sido objeto de un sinnúmero de introducciones de peces de agua dulce, los cuales han entrado al país con diversos propósitos, entre los que se destacan la acuicultura, pesca deportiva y la acuarofilia. González (1995), reporta el estado de estas introducciones y de su establecimiento en algunos ecosistemas dulceacuícolas del país. A partir de esta publicación, no se han realizado estudios sobre el tema, hecho que nos impide conocer sobre la presencia de nuevos peces exóticos en nuestras aguas continentales. -
Cytogenetics of Gymnogeophagus Setequedas (Cichlidae: Geophaginae), with Comments on Its Geographical Distribution
Neotropical Ichthyology, 15(2): e160035, 2017 Journal homepage: www.scielo.br/ni DOI: 10.1590/1982-0224-20160035 Published online: 26 June 2017 (ISSN 1982-0224) Copyright © 2017 Sociedade Brasileira de Ictiologia Printed: 30 June 2017 (ISSN 1679-6225) Cytogenetics of Gymnogeophagus setequedas (Cichlidae: Geophaginae), with comments on its geographical distribution Leonardo M. Paiz1, Lucas Baumgärtner2, Weferson J. da Graça1,3, Vladimir P. Margarido1,2 and Carla S. Pavanelli1,3 We provide cytogenetic data for the threatened species Gymnogeophagus setequedas, and the first record of that species collected in the Iguaçu River, within the Iguaçu National Park’s area of environmental preservation, which is an unexpected occurrence for that species. We verified a diploid number of 2n = 48 chromosomes (4sm + 24st + 20a) and the presence of heterochromatin in centromeric and pericentromeric regions, which are conserved characters in the Geophagini. The multiple nucleolar organizer regions observed in G. setequedas are considered to be apomorphic characters in the Geophagini, whereas the simple 5S rDNA cistrons located interstitially on the long arm of subtelocentric chromosomes represent a plesiomorphic character. Because G. setequedas is a threatened species that occurs in lotic waters, we recommend the maintenance of undammed environments within its known area of distribution. Keywords: Chromosomes, Conservation, Iguaçu River, Karyotype, Paraná River. Fornecemos dados citogenéticos para a espécie ameaçada Gymnogeophagus setequedas, e o primeiro registro da espécie coletado no rio Iguaçu, na área de preservação ambiental do Parque Nacional do Iguaçu, a qual é uma área de ocorrência inesperada para esta espécie. Verificamos em G. setequedas 2n = 48 cromossomos (4sm + 24st + 20a) e heterocromatina presente nas regiões centroméricas e pericentroméricas, as quais indicam caracteres conservados em Geophagini. -
2010 Board of Governors Report
American Society of Ichthyologists and Herpetologists Board of Governors Meeting Westin – Narragansett Ballroom B Providence, Rhode Island 7 July 2010 Maureen A. Donnelly Secretary Florida International University College of Arts & Sciences 11200 SW 8th St. - ECS 450 Miami, FL 33199 [email protected] 305.348.1235 13 June 2010 The ASIH Board of Governor's is scheduled to meet on Wednesday, 7 July 2010 from 5:00 – 7:00 pm in the Westin Hotel in Narragansett Ballroom B. President Hanken plans to move blanket acceptance of all reports included in this book that cover society business for 2009 and 2010 (in part). The book includes the ballot information for the 2010 elections (Board of Governors and Annual Business Meeting). Governors can ask to have items exempted from blanket approval. These exempted items will be acted upon individually. We will also act individually on items exempted by the Executive Committee. Please remember to bring this booklet with you to the meeting. I will bring a few extra copies to Providence. Please contact me directly (email is best - [email protected]) with any questions you may have. Please notify me if you will not be able to attend the meeting so I can share your regrets with the Governors. I will leave for Providence (via Boston on 4 July 2010) so try to contact me before that date if possible. I will arrive in Providence on the afternoon of 6 July 2010 The Annual Business Meeting will be held on Sunday 11 July 2010 from 6:00 to 8:00 pm in The Rhode Island Convention Center (RICC) in Room 556 AB. -
Comparative Cytogenetics of Neotropical Cichlid Fishes
COMPARATIVE A peer-reviewed open-access journal CompCytogen 8(3): 169–183 (2014)Comparative cytogenetics of Neotropical cichlid fishes... 169 doi: 10.3897/CompCytogen.v8i3.7279 RESEARCH ARTICLE Cytogenetics www.pensoft.net/journals/compcytogen International Journal of Plant & Animal Cytogenetics, Karyosystematics, and Molecular Systematics Comparative cytogenetics of Neotropical cichlid fishes (Nannacara, Ivanacara and Cleithracara) indicates evolutionary reduction of diploid chromosome numbers Lucie Hodaňová1, Lukáš Kalous1, Zuzana Musilová1,2,3 1 Department of Zoology and Fisheries, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences Prague, Prague, Czech Republic 2 Laboratory of Fish Genetics, Institute of Animal Physiology and Genetics AV CR, Libechov, Czech Republic 3 Zoological Institute, University of Basel, Switzerland Corresponding author: Zuzana Musilová ([email protected]) Academic editor: Petr Rab | Received 17 February 2014 | Accepted 29 July 2014 | Published 8 August 2014 http://zoobank.org/E973BC3C-DBEA-4915-9E63-6BBEE9E0940D Citation: Hodaňová L, Kalous L, Musilová Z (2014) Comparative cytogenetics of Neotropical cichlid fishes Nannacara( , Ivanacara and Cleithracara) indicates evolutionary reduction of diploid chromosome numbers. Comparative Cytogenetics 8(3): 169–183. doi: 10.3897/CompCytogen.v8i3.7279 Abstract A comparative cytogenetic analysis was carried out in five species of a monophyletic clade of neotropical Cichlasomatine cichlids, namely Cleithracara maronii Steindachner, 1881, Ivanacara adoketa (Kullander & Prada-Pedreros, 1993), Nannacara anomala Regan, 1905, N. aureocephalus Allgayer, 1983 and N. tae- nia Regan, 1912. Karyotypes and other chromosomal characteristics were revealed by CDD banding and mapped onto the phylogenetic hypothesis based on molecular analyses of four genes, namely cyt b, 16S rRNA, S7 and RAG1. The diploid numbers of chromosomes ranged from 44 to 50, karyotypes were com- posed predominantly of monoarmed chromosomes and one to three pairs of CMA3 signal were observed. -
Ciclídeos No Rio Catolé Grande No Trecho Urbano De Itapetinga, Ba: Ecomorfologia E Alimentação
0 UNIVERSIDADE ESTADUAL DO SUDOESTE DA BAHIA PROGRAMA DE PÓS-GRADUAÇÃO STRICTO SENSU EM CIÊNCIAS AMBIENTAIS CICLÍDEOS NO RIO CATOLÉ GRANDE NO TRECHO URBANO DE ITAPETINGA, BA: ECOMORFOLOGIA E ALIMENTAÇÃO TALITA AMORIM SANTOS Itapetinga Bahia Fevereiro – 2015 1 UNIVERSIDADE ESTADUAL DO SUDOESTE DA BAHIA PROGRAMA DE PÓS-GRADUAÇÃO STRICTO SENSU EM CIÊNCIAS AMBIENTAIS Ciclídeos no Rio Catolé Grande no Trecho Urbano de Itapetinga, BA: Ecomorfologia e Alimentação Autora: Talita Amorim Santos Orientadora: Cláudia Maria Reis Raposo Maciel “Dissertação apresentada, como parte das exigências para obtenção do título de MESTRE EM CIÊNCIAS AMBIENTAIS, no programa de Pós-Graduação Stricto Sensu em Ciências Ambientais da Universidade Estadual do Sudoeste da Bahia – Área de concentração: Meio Ambiente e Desenvolvimento” Itapetinga Bahia Fevereiro - 2015 577.6 Santos, Talita Amorim S239c Ciclídeos no rio Catolé Grande no trecho urbano de Itapetinga, BA: Ecomorfologia e alimentação. / Talita Amorim Santos. - Itapetinga: UESB, 2015. 50f. Dissertação apresentada, como parte das exigências para obtenção do título de MESTRE EM CIÊNCIAS AMBIENTAIS, no programa de Pós-Graduação Stricto Sensu em Ciências Ambientais da Universidade Estadual do Sudoeste da Bahia – Área de concentração: Meio Ambiente e Desenvolvimento. Sob a orientação da Profª. D.Sc. Cláudia Maria Reis Raposo Maciel. 1. Ciclídeos - Atributos ecomorfológicos. 2. Peixes – Conteúdo estomacal. 3. Peixes – Morfologia - Dieta. I. Universidade Estadual do Sudoeste da Bahia. Programa de Pós-Graduação em Ciências Ambientais. II. Maciel, Cláudia Maria Reis Raposo. III. Título. CDD(21): 577.6 Catalogação na fonte: Adalice Gustavo da Silva – CRB/5-535 Bibliotecária – UESB – Campus de Itapetinga-BA Índice Sistemático para Desdobramento por Assunto: 1. Ciclídeos - Atributos ecomorfológicos 2. -
Comparison of Fish Assemblages in Flooded Forest Versus Floating Meadows Habitats of an Upper Amazon Floodplain (Pacaya Samiria National Reserve, Peru)
COMPARISON OF FISH ASSEMBLAGES IN FLOODED FOREST VERSUS FLOATING MEADOWS HABITATS OF AN UPPER AMAZON FLOODPLAIN (PACAYA SAMIRIA NATIONAL RESERVE, PERU) By SANDRA BIBIANA CORREA A THESIS PRESENTED TO THE GRADUATE SCHOOL OF THE UNIVERSITY OF FLORIDA IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF SCIENCE UNIVERSITY OF FLORIDA 2005 Copyright 2005 by Sandra Bibiana Correa To my parents and my family. During the course of my life their love and belief in my potential encouraged me to keep going and achieve my dreams. They supported me in all of my decisions even when they separated us for long periods of time. I also dedicate this thesis to Michael Goulding who inspired me to study Amazonian fishes and who is a pioneer in showing their beauty and fragility to the world. ACKNOWLEDGMENTS This thesis would not have been possible without the support and commitment of my supervisory committee chair (Dr. James S. Albert) and my committee members (Dr. Lauren J. Chapman and Dr. William G.R. Crampton). All of them put lots of energy and time into the development of different aspects of this work. I thank James and Will for the outstanding time we spent in Peru during the field work that was the basis for this thesis. They were also crucial during the writing stage, and I enjoyed great discussions on Amazonian fish natural history and ecology. Lauren was my main support during the data analysis process. Without her, many of the results presented in this thesis may not have come out. I also want to thank my field assistant; B.Sc. -
Redalyc.Checklist of the Freshwater Fishes of Colombia
Biota Colombiana ISSN: 0124-5376 [email protected] Instituto de Investigación de Recursos Biológicos "Alexander von Humboldt" Colombia Maldonado-Ocampo, Javier A.; Vari, Richard P.; Saulo Usma, José Checklist of the Freshwater Fishes of Colombia Biota Colombiana, vol. 9, núm. 2, 2008, pp. 143-237 Instituto de Investigación de Recursos Biológicos "Alexander von Humboldt" Bogotá, Colombia Available in: http://www.redalyc.org/articulo.oa?id=49120960001 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative Biota Colombiana 9 (2) 143 - 237, 2008 Checklist of the Freshwater Fishes of Colombia Javier A. Maldonado-Ocampo1; Richard P. Vari2; José Saulo Usma3 1 Investigador Asociado, curador encargado colección de peces de agua dulce, Instituto de Investigación de Recursos Biológicos Alexander von Humboldt. Claustro de San Agustín, Villa de Leyva, Boyacá, Colombia. Dirección actual: Universidade Federal do Rio de Janeiro, Museu Nacional, Departamento de Vertebrados, Quinta da Boa Vista, 20940- 040 Rio de Janeiro, RJ, Brasil. [email protected] 2 Division of Fishes, Department of Vertebrate Zoology, MRC--159, National Museum of Natural History, PO Box 37012, Smithsonian Institution, Washington, D.C. 20013—7012. [email protected] 3 Coordinador Programa Ecosistemas de Agua Dulce WWF Colombia. Calle 61 No 3 A 26, Bogotá D.C., Colombia. [email protected] Abstract Data derived from the literature supplemented by examination of specimens in collections show that 1435 species of native fishes live in the freshwaters of Colombia. -
Life History Traits of Two Dwarf Cichlids Species in the White Waters of the Amazonian Floodplain
Environ Biol Fish DOI 10.1007/s10641-017-0660-8 Life history traits of two dwarf cichlids species in the white waters of the Amazonian floodplain Jomara Cavalcante de Oliveira & Helder Lima de Queiroz Received: 1 December 2016 /Accepted: 6 August 2017 # Springer Science+Business Media B.V. 2017 Abstract The reproductive parameters are among the Introduction most important life history aspects of fishes influenced by environmental variation. During recent years, the The reproductive parameters of tropical fish have been main life history strategies of Amazonian fish species broadly used in the definition of their main life history were defined mostly by a set of reproductive parameters. strategies (Winemiller 2005), not only for Amazonian In the present work, we sought to describe important life species living in different environments (Espírito-Santo history parameters, in particular on reproductive charac- et al. 2013), but also for fish species found at other teristics of Apistogramma agassizii and Apistogramma regions and latitudes (Mims and Olsen 2012). The in bitaeniata, found in floodplain lakes of the Brazilian depth understanding of the reproductive strategies of a Amazonia. The species presented a positive sexual di- given population provide important information on the morphism, and males were significantly bigger than relationships of that population and the local habitat. females. For both sexes, four developmental phase of Recently, studies on the reproductive biology of teleosts gonad maturation were detected, and based on those it have revealed a broad variety of strategies that many was possible to identify mature, reproductive specimens species evolved, as result of adaptations to abiotic fac- throughout the entire period of the study. -
A L , .E: T É E • DEL MUSEO DE HISTORIA NATURAL UNIVERSIDAD NACIONAL MAYOR DE SAN MARCOS
·""'' • J.., :\ ..., . ..... j ··' >-'•lil'{J.f 1 , . " . • • . • . í PUBLICACIONES , a L , .e: T É e • DEL MUSEO DE HISTORIA NATURAL UNIVERSIDAD NACIONAL MAYOR DE SAN MARCOS SERIE A ZOOLOGIA N 11 50 Publ. Mus. Hist. nat. UNMSM (A) 50:1-11 12 Diciembre, 1995 ADDITIONS AND CORRECTIONS TO THE LIST OF FRESHWATER FISHES OF PERU Fonchii CHANG1 and Hernán ORTEGA1 ABSTRACT Data from the literature and examination of recenlly collected specimens in the ichthyological collections of the Museo de Historia Natural, Universidad Nacional Mayor de San Marcos, allow us to present herein numerous additions and corrections lo the Checklist of lhe Freshwater Fishes of Peru. This taxonomic revision has resulted in lhe addition of 78 new species, and lhe establishement of 36 new combinations or taxonomic statuses. Four incorrectly spelled names are corrected. Sixteen species previously listed for Peru have been found not to occur in lhe country, bringing lhe current number of Peruvian freshwater species to 855. RESUMEN Los datos de literatura y la revisión de especímenes recientemente colectados, en la colección ictiológica del Museo de Historia Natural, Universidad Nacional Mayor de San Marcos, nos ha permitido presentar aquí varias adiciones y correcciones a la Lista de los Peces de Agua Dulce del Perú. Esta revisión taxonómica ha resultado en la adición de 78 nuevas especies, y el establecimiento de 36 nuevas combinaciones o estatus taxonómicos. Cuatro nombres mal citados son corregidos. Dieciséis especies previamente listadas para el Perú no se encuentran en el país, dando un número de 855 especies registradas para las aguas continentales del Perú. INTRODUCTION In the time between the publications of Fowler ( 1945) and Ortega ( 1991 ). -
Coccídios (Protozoa: Apicomplexa) Em Peixes Da Planície De Inundação Do Rio Curiaú, Estado Do Amapá: Prevalência E Caracterização Molecular
Universidade Federal do Amapá Pró-Reitoria de Pesquisa e Pós-Graduação Programa de Pós-Graduação em Biodiversidade Tropical Mestrado e Doutorado UNIFAP / EMBRAPA-AP / IEPA / CI-Brasil COCCÍDIOS (PROTOZOA: APICOMPLEXA) EM PEIXES DA PLANÍCIE DE INUNDAÇÃO DO RIO CURIAÚ, ESTADO DO AMAPÁ: PREVALÊNCIA E CARACTERIZAÇÃO MOLECULAR MACAPÁ, AP 2018 MÁRCIO CHARLES DA SILVA NEGRÃO COCCÍDIOS (PROTOZOA: APICOMPLEXA) EM PEIXES DA PLANÍCIE DE INUNDAÇÃO DO RIO CURIAÚ, ESTADO DO AMAPÁ: PREVALÊNCIA E CARACTERIZAÇÃO MOLECULAR Dissertação apresentada ao Programa de Pós-Graduação em Biodiversidade Tropical (PPGBIO) da Universidade Federal do Amapá, como requisito parcial à obtenção do título de Mestre em Biodiversidade Tropical. Orientador: Dr. Lúcio André Viana Dias MACAPÁ, AP 2018 MÁRCIO CHARLES DA SILVA NEGRÃO COCCÍDIOS (PROTOZOA: APICOMPLEXA) EM PEIXES DA PLANÍCIE DE INUNDAÇÃO DO RIO CURIAÚ, ESTADO DO AMAPÁ: PREVALÊNCIA E CARACTERIZAÇÃO MOLECULAR _________________________________________ Dr. Lúcio André Viana Dias Universidade Federal do Amapá (UNIFAP) ____________________________________________ Dr. Marcos Tavares Dias Empresa Brasileira de Pesquisa Agropecuária (EMBRAPA) ____________________________________________ Dra. Marcela Nunes Videira Universidade Estadual do Amapá (UEAP) Aprovada em 11 de abril de 2018, Macapá, AP, Brasil. À Deus pela vida; Aos meus pais; Aos meus irmãos; Aos meus tios e primos; A todos os meus amigos. AGRADECIMENTOS Agradeço a Deus, pela vida e oportunidades. Aos meus pais Benedito Vilhena Negrão e Maria Esmeralda da Silva Negrão,