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Morphological and Molecular Characterization And
Turkish Journal of Zoology Turk J Zool (2017) 41: 227-236 http://journals.tubitak.gov.tr/zoology/ © TÜBİTAK Research Article doi:10.3906/zoo-1506-47 Morphological and molecular characterization and phylogenetic position of a new record, Tylenchorhynchus zeae, and some known species of Telotylenchidae Siddiqi, 1960 and Merliniidae Siddiqi, 1971 from Iran 1 1, 1 2 Somaye ALVANI , Esmat MAHDIKHANI-MOGHADAM *, Hamid ROUHANI , Abbas MOHAMMADI 1 Department of Plant Protection, Faculty of Agriculture, Ferdowsi University of Mashhad, Mashhad, Iran 2 Department of Plant Protection, Faculty of Agriculture, University of Birjand, Birjand, Iran Received: 04.07.2015 Accepted/Published Online: 01.07.2016 Final Version: 04.04.2017 Abstract: In order to identify the plant-parasitic nematodes associated with Berberis vulgaris, Crocus sativus, and Ziziphus zizyphus, 360 soil samples were collected from the rhizosphere of these plants in the South Khorasan Province of Iran during 2012–2014. Among the identified species, Tylenchorhynchus zeae Sethi and Swarup, 1968 of Telotylenchidae Siddiqi, 1960 is a new record from Iran and the isolate is described and illustrated based on morphological, morphometric, and molecular characteristics. The phylogenetic tree inferred from partial sequences of the 28S rRNA (D2D3 segments) grouped the Iranian isolate with other T. zeae sequences, forming a strongly supported clade (Bayesian posterior probability: 100%). T. zeae is reported here for the first time on Ziziphus zizyphus for Iranian nematofauna. Additional morphological and molecular information is also provided for other species including Amplimerlinius globigerus, Merlinius brevidens, Pratylenchoides alkani, P. ritteri, Scutylenchus rugosus, S. tartuensis, and Trophurus impar from B. vulgaris, C. sativus, and Z. -
A Synopsis of the Genera and Species in the Tylenchorhynchinae (Tylenchoidea, Nematoda)1
OF WASHINGTON, VOLUME 40, NUMBER 1, JANUARY 1973 123 Speer, C. A., and D. M. Hammond. 1970. tured bovine cells. J. Protozool. 18 (Suppl.): Development of Eimeria larimerensis from the 11. Uinta ground squirrel in cell cultures. Ztschr. Vetterling, J. M., P. A. Madden, and N. S. Parasitenk. 35: 105-118. Dittemore. 1971. Scanning electron mi- , L. R. Davis, and D. M. Hammond. croscopy of poultry coccidia after in vitro 1971. Cinemicrographic observations on the excystation and penetration of cultured cells. development of Eimeria larimerensis in cul- Ztschr. Parasitenk. 37: 136-147. A Synopsis of the Genera and Species in the Tylenchorhynchinae (Tylenchoidea, Nematoda)1 A. C. TARJAN2 ABSTRACT: The genera Uliginotylenchus Siddiqi, 1971, Quinisulcius Siddiqi, 1971, Merlinius Siddiqi, 1970, Ttjlenchorhynchus Cobb, 1913, Tetylenchus Filipjev, 1936, Nagelus Thome and Malek, 1968, and Geocenamus Thorne and Malek, 1968 are discussed. Keys and diagnostic data are presented. The following new combinations are made: Tetylenchus aduncus (de Guiran, 1967), Merlinius al- boranensis (Tobar-Jimenez, 1970), Geocenamus arcticus (Mulvey, 1969), Merlinius brachycephalus (Litvinova, 1946), Merlinius gaudialis (Izatullaeva, 1967), Geocenamus longus (Wu, 1969), Merlinius parobscurus ( Mulvey, 1969), Merlinius polonicus (Szczygiel, 1970), Merlinius sobolevi (Mukhina, 1970), and Merlinius tatrensis (Sabova, 1967). Tylenchorhynchus galeatus Litvinova, 1946 is with- drawn from the genus Merlinius. The following synonymies are made: Merlinius berberidis (Sethi and Swarup, 1968) is synonymized to M. hexagrammus (Sturhan, 1966); Ttjlenchorhynchus chonai Sethi and Swarup, 1968 is synonymized to T. triglyphus Seinhorst, 1963; Quinisulcius nilgiriensis (Seshadri et al., 1967) is synonymized to Q. acti (Hopper, 1959); and Tylenchorhynchus tener Erzhanova, 1964 is regarded a synonym of T. -
Theory Manual Course No. Pl. Path
NAVSARI AGRICULTURAL UNIVERSITY Theory Manual INTRODUCTORY PLANT NEMATOLOGY Course No. Pl. Path 2.2 (V Dean’s) nd 2 Semester B.Sc. (Hons.) Agri. PROF.R.R.PATEL, ASSISTANT PROFESSOR Dr.D.M.PATHAK, ASSOCIATE PROFESSOR Dr.R.R.WAGHUNDE, ASSISTANT PROFESSOR DEPARTMENT OF PLANT PATHOLOGY COLLEGE OF AGRICULTURE NAVSARI AGRICULTURAL UNIVERSITY BHARUCH 392012 1 GENERAL INTRODUCTION What are the nematodes? Nematodes are belongs to animal kingdom, they are triploblastic, unsegmented, bilateral symmetrical, pseudocoelomateandhaving well developed reproductive, nervous, excretoryand digestive system where as the circulatory and respiratory systems are absent but govern by the pseudocoelomic fluid. Plant Nematology: Nematology is a science deals with the study of morphology, taxonomy, classification, biology, symptomatology and management of {plant pathogenic} nematode (PPN). The word nematode is made up of two Greek words, Nema means thread like and eidos means form. The words Nematodes is derived from Greek words ‘Nema+oides’ meaning „Thread + form‟(thread like organism ) therefore, they also called threadworms. They are also known as roundworms because nematode body tubular is shape. The movement (serpentine) of nematodes like eel (marine fish), so also called them eelworm in U.K. and Nema in U.S.A. Roundworms by Zoologist Nematodes are a diverse group of organisms, which are found in many different environments. Approximately 50% of known nematode species are marine, 25% are free-living species found in soil or freshwater, 15% are parasites of animals, and 10% of known nematode species are parasites of plants (see figure at left). The study of nematodes has traditionally been viewed as three separate disciplines: (1) Helminthology dealing with the study of nematodes and other worms parasitic in vertebrates (mainly those of importance to human and veterinary medicine). -
Transcriptome Profiling of the Root-Knot Nematode Meloidogyne Enterolobii During Parasitism and Identification of Novel Effector Proteins
Ecole Doctorale de Sciences de la Vie et de la Santé Unité de recherche : UMR ISA INRA 1355-UNS-CNRS 7254 Thèse de doctorat Présentée en vue de l’obtention du grade de docteur en Biologie Moléculaire et Cellulaire de L’UNIVERSITE COTE D’AZUR par NGUYEN Chinh Nghia Etude de la régulation du transcriptome de nématodes parasites de plante, les nématodes à galles du genre Meloidogyne Dirigée par Dr. Bruno FAVERY Soutenance le 8 Décembre, 2016 Devant le jury composé de : Pr. Pierre FRENDO Professeur, INRA UNS CNRS Sophia-Antipolis Président Dr. Marc-Henri LEBRUN Directeur de Recherche, INRA AgroParis Tech Grignon Rapporteur Dr. Nemo PEETERS Directeur de Recherche, CNRS-INRA Castanet Tolosan Rapporteur Dr. Stéphane JOUANNIC Chargé de Recherche, IRD Montpellier Examinateur Dr. Bruno FAVERY Directeur de Recherche, UNS CNRS Sophia-Antipolis Directeur de thèse Doctoral School of Life and Health Sciences Research Unity: UMR ISA INRA 1355-UNS-CNRS 7254 PhD thesis Presented and defensed to obtain Doctor degree in Molecular and Cellular Biology from COTE D’AZUR UNIVERITY by NGUYEN Chinh Nghia Comprehensive Transcriptome Profiling of Root-knot Nematodes during Plant Infection and Characterisation of Species Specific Trait PhD directed by Dr Bruno FAVERY Defense on December 8th 2016 Jury composition : Pr. Pierre FRENDO Professeur, INRA UNS CNRS Sophia-Antipolis President Dr. Marc-Henri LEBRUN Directeur de Recherche, INRA AgroParis Tech Grignon Reporter Dr. Nemo PEETERS Directeur de Recherche, CNRS-INRA Castanet Tolosan Reporter Dr. Stéphane JOUANNIC Chargé de Recherche, IRD Montpellier Examinator Dr. Bruno FAVERY Directeur de Recherche, UNS CNRS Sophia-Antipolis PhD Director Résumé Les nématodes à galles du genre Meloidogyne spp. -
Actual Problems of Protection and Sustainable Use of the Animal World Diversity
ACADEMY OF SCIENCES OF MOLDOVA DEPARTMENT OF NATURE AND LIFE SCIENCES INSTITUTE OF ZOOLOGY Actual problems of protection and sustainable use of ThE animal world diversity International Conference of Zoologists dedicated to the 50th anniversary from the foundation of Institute of Zoology of ASM Chisinau – 2011 ACTUAL PRObLEMS OF PROTECTION AND SUSTAINAbLE USE OF ThE ANIMAL wORLD DIVERSITY Content CZU 59/599:502.74 (082) D 53 Dumitru Murariu. READING ABOUT SPECIES CONCEPT IN BIOLOGY.......................................................................10 Dan Munteanu. AChievements Of Romania in ThE field Of nature The materials of International Conference of Zoologists „Actual problems of protection and protection and implementation Of European Union’S rules concerning ThE biodiversity conservation (1990-2010)...............................................................................11 sustainable use of animal world diversity” organized by the Institute of Zoology of the Aca- demy of Sciences of Moldova in celebration of the 50th anniversary of its foundation are a gene- Laszlo Varadi. ThE protection and sustainable use Of Aquatic resources.....................................13 ralization of the latest scientific researches in the country and abroad concerning the diversity of aquatic and terrestrial animal communities, molecular-genetic methods in systematics, phylo- Terrestrial Vertebrates.................................................................................................................................................15 -
Studies on the Morphology and Bio-Ecology of Nematode Fauna of Rewa
STUDIES ON THE MORPHOLOGY AND BIO-ECOLOGY OF NEMATODE FAUNA OF REWA A TMESIS I SUBMITTED FOR THE DEGREE OF DOCTOR OF PHlLOSOPHy IN ZOOLOGY A. P. S. UNIVERSITY. REWA (M. P.) INDIA 1995 MY MANOJ KUMAR SINGH ZOOLOGICAL RESEARCH LAB GOVT. AUTONOMOUS MODEL SCIENCE COLLEGE REWA (M. P.) INDIA La u 4 # s^ ' T5642 - 7 OCT 2002 ^ Dr. C. B. Singh Department of Zoology M Sc, PhD Govt Model Science Coll Professor & Head Rewa(M P ) - 486 001 Ref Date 3^ '^-f^- ^'^ir CERTIFICATE Shri Manoj Kumar Singh, Research Scholar, Department of Zoology, Govt. Model Science College, Rewa has duly completed this thesis entitled "STUDIES ON THE MORPHOLOGY AND BIO-ECOLOGY OF NEMATODE FAUNA OF REWA" under my supervision and guidance He was registered for the degree of Philosophy in Zoology on Jan 11, 1993. Certified that - 1. The thesis embodies the work of the candidate himself 2. The candidate worked under my guidance for the period specified b\ A. P. S. University, Rewa. 3. The work is upto the standard, both from, itscontentsas well as literary presentation point of view. I feel pleasure in commendingthis work to university for the awaid of the degree. (Dr. Co. Singh) or^ra Guide Professor & Head of Zoology department Govt. Model Science College (Autonomous) Rewa (M.P.) DECLARATION The work embodied in this thesis is original and was conducted druing the peirod for Jan. 1993 to July 1995 at the Zoological Research Lab, Govt. Model Science College Rewa, (M.P.) to fulfil the requirement for the degree of Doctor of Philosophy in Zoology from A.P.S. -
Morphology and Ultrastructure of the Intestine in a Plant- Parasitic Nematode, Tylenchorhynchus Dubius
Morphology and Ultrastructure of the Intestine in a Plant- Parasitic Nematode, Tylenchorhynchus dubius J. R. BYERS and R. V. ANDERSON 1 Abstract: An unusual feature of the intestine in Tylenchorhynchus dubius is the presence, within the intestinal cytoplasm, of an extensive system of fibrillar bundles consisting of thin (14 nm diam) filaments and thick (70-90 nm diam), rod-like elements arranged in closely packed arrays. The larger of the fibrillar bundles, for which the term "intestinal fasciculi" is proposed, are evident in whole mounts and apparently correspond to the lateral or sinuous canals described in some other tylenchids. The nature and function of fasciculi are not known, but some poss~ilities are considered. Fasciculi were found in at least seven other species of Tylenchorhynchus. The intestinal cytoplasm also contains the usual sub cellular organelles and large amounts of reserve materials in the form of particulate glycogen and three types of globules. The surface of the cells bordering the lumen is elaborated into numerous microvilli which have central filaments and often bear regular external projections. Although terminal bars delimit the apical margins between cells, the frequent lack of complete lateral boundaries and extensive length of the fasciculi indicate that the intestinal epithelium is a multinucleate mosaic or syncytium. Although there are numerous descriptions intestine. Results from light microscopy were of the ultrastructure of the intestine in based on studies of whole mounts in glycerine, nematodes (see 5, 9, 12 for references), only a heat-relaxed specimens in water mounts and few have dealt with the intestine of plant semi-thin sections (0.5-1 pm). -
Plant-Parasitic Nematodes in Germany – an Annotated Checklist
86 (3) · December 2014 pp. 177–198 Plant-parasitic nematodes in Germany – an annotated checklist Dieter Sturhan Arnethstr. 13D, 48159 Münster, Germany, and c/o Julius Kühn-Institut, Toppheideweg 88, 48161 Münster, Germany E-mail: [email protected] Received 15 September 2014 | Accepted 28 October 2014 Published online at www.soil-organisms.de 1 December 2014 | Printed version 15 December 2014 Abstract A total of 268 phytonematode species indigenous in Germany or more recently introduced and established outdoors are listed. Their current taxonomic status and classification is given, which is not always in agreement with that applied in Fauna Europaea or recent publications. Recently used synonyms are included and comments on the species status are sometimes added. Species originally described from Germany are particularly marked, presence of types and other voucher specimens in the German Nematode Collection - Terrestrial Nematodes (DNST) is indicated; likewise potential occurrence or absence of species in field soil and similar cultivated land is noted. Species known from indoor plants and only occasionally observed outdoors are listed separately. Synonymies and species considered as species inquirendae are listed in case records refer to Germany; records and identifications considered as doubtful are also listed. In a separate section notes on a number of genera and species are added, taxonomic problems are indicated, and data on morphology, distribution and habitat of some recently discovered species and of still unidentified or undescribed species or populations are given. Longidorus macroteromucronatus is synonymised with L. poessneckensis. Paratrophurus striatus is transferred as T. casigo nom. nov., comb. nov. to the genus Tylenchorhynchus. Neotypes of Merlinius bavaricus and Bursaphelenchus fraudulentus are designated. -
Tylenchorhynchus Annulatus T. Leviterminalis (Nematoda: Belonolaimidae)
Plant Pathology Bulletin 15:251-262, 2006 Tylenchorhynchus annulatus T. leviterminalis (Nematoda: Belonolaimidae) 1 2 3 4,5 1 2 3 4 5 [email protected] +886-4-22876712 95 11 30 . 2006. Tylenchorhynchus annulatus T. leviterminalis (Nematoda: Belonolaimidae) . 15 : 251-262 2005 1 10 Tylenchorhynchus annulatus (Cassidy, 1930) Golden, 1971 9 T. leviterminalis Siddiqi, Mukherjee & Dasgupta, 1982 (morphometrics) DNA (ribosomal DNA, rDNA) ( 5.8S ITS-1 ITS-2 18S 28S ) ( b, m, ODG, O, EP tail ABW 7 ) SEM GenBank rDNA 1198 bp 91.1 % ITS-1 ITS-2 5.8S ( ) 88.1 % (493 bp 490 bp) 83.9 % (237 bp 240 bp) 98.8 % (162 bp) DNA Tylenchorhynchus annulatus Tylenchorhynchus leviterminalis (subclavate) (smooth) Fortuner Luc (9) (transverse striation) (stunt nematode, Tylenchorhynchus Cobb, 1913) 3 (c =2-4) (cephalic lip region) Belonolaimidae Whitehead, 1960 (family) Telotylenchinae Siddiqi, 1960 (subfamily) (stylet) 177 (2) Tylenchorhynchus (stylet knob) 15-30 m (9,23) 1 (median bulb) (procorpus) mm (cuticle) (annules) (isthmus) (lateral field) 2-5 (incisures) (basal bulb) (pear (aerolations) (tail) shaped) (intestine) (conoid) (subcylindroid) (migratory 252 15 4 2006 ectoparasitic) 2005 1 19 (SEM) (morphometrics) (1,17,20,21) T. annulatus (Cassidy, 1930) Golden, 1971 DNA (ribosomal DNA, rDNA) (= T. martini Fielding, 1956) (type locality) T. annulatus T. leviterminalis Kailua (type habitat) (21) T. annulatus (grasses) T. leviterminalis Siddiqi, Mukherjee & Dasgupta, 1982 (= T. crassicaudatus leviterminalis Siddiqi, Mukherjee & ( ) Dasgupta, 1982) (23) (West 2-3 Bengal) Chandan Nagar (Musa paradisiacal) (mango, Mangifera indica L.) Jackfruit (Artocarpus integrifolia L.) (22) 2% 6 T. rDNA ( nudus Allen, 1955 T. annulatus T. cylindricus Cobb, 5.8S ITS-1 ITS-2 18S 1913 3 (12,16,26) 28S ) T. -
Succession of Nematodes During Composting Processess and Their Potential As Indicators of Compost Maturity
Succession of nematodes during composting processess and their potential as indicators of compost maturity Hanne Steel Promoters: Prof. dr. Wim Bert (UGent) Prof. dr. Tom Moens (UGent) Thesis submitted to obtain the degree of doctor in Sciences, Biology Proefschrift voorgelegd tot het bekomen van de graad van doctor in de Wetenschappen, Biologie Dit werk werd mogelijk gemaakt door een beurs van het Fonds Wetenschappelijk Onderzoek- Vlaanderen (FWO) This work was supported by a grant of the Foundation for Scientific Research, Flanders (FWO) 3 Reading Committee: Prof. dr. Deborah Neher (University of Vermont, USA) Dr. Thomaé Kakouli-Duarte (Institute of Technology Carlow, Ireland) Prof. dr. Magda Vincx (Ghent University, Belgium) Dr. Eduardo de la Peña (Ghent University, Belgium) Examination Committee: Prof. dr. Koen Sabbe (chairman, Ghent University, Belgium) Prof. dr. Wim Bert (secretary, promotor, Ghent University, Belgium) Prof. dr. Tom Moens (promotor, Ghent University, Belgium) Prof. dr. Deborah Neher (University of Vermont, USA) Dr. Thomaé Kakouli-Duarte (Institute of Technology Carlow, Ireland) Prof. dr. Magda Vincx (Ghent University, Belgium) Prof. dr. Wilfrida Decraemer (Royal Belgian Institute of Natural Sciences, Belgium) Dr. Eduardo de la Peña (Ghent University, Belgium) Dr. Ir. Bart Vandecasteele (Institute for Agricultural and Fisheries Research, Belgium) 5 Acknowledgments Eindelijk is het zover! Ik mag mijn dankwoord schrijven, iets waar ik stiekem al heel lang naar uitkijk en dat alleen maar kan betekenen dat mijn doctoraat bijna klaar is. JOEPIE! De voorbije 5 jaar waren zonder twijfel leuk, leerrijk en ontzettend boeiend. Maar… jawel doctoreren is ook een project van lange adem, met vallen en opstaan, met zin en tegenzin, met geluk en tegenslag, met fantastische hoogtes maar soms ook laagtes….Nu ik er zo over nadenk en om in een vertrouwd thema te blijven: doctoreren verschilt eigenlijk niet zo gek veel van een composteringsproces, dat bij voorkeur trouwens ook veel adem (zuurstof) ter beschikking heeft. -
Taxonomy and Morphology of Plant-Parasitic Nematodes Associated with Turfgrasses in North and South Carolina, USA
Zootaxa 3452: 1–46 (2012) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA Copyright © 2012 · Magnolia Press Article ISSN 1175-5334 (online edition) urn:lsid:zoobank.org:pub:14DEF8CA-ABBA-456D-89FD-68064ABB636A Taxonomy and morphology of plant-parasitic nematodes associated with turfgrasses in North and South Carolina, USA YONGSAN ZENG1, 5, WEIMIN YE2*, LANE TREDWAY1, SAMUEL MARTIN3 & MATT MARTIN4 1 Department of Plant Pathology, North Carolina State University, Raleigh, NC 27695-7613, USA. E-mail: [email protected], [email protected] 2 Nematode Assay Section, Agronomic Division, North Carolina Department of Agriculture & Consumer Services, Raleigh, NC 27607, USA. E-mail: [email protected] 3 Plant Pathology and Physiology, School of Agricultural, Forest and Environmental Sciences, Clemson University, 2200 Pocket Road, Florence, SC 29506, USA. E-mail: [email protected] 4 Crop Science Department, North Carolina State University, 3800 Castle Hayne Road, Castle Hayne, NC 28429-6519, USA. E-mail: [email protected] 5 Department of Plant Protection, Zhongkai University of Agriculture and Engineering, Guangzhou, 510225, People’s Republic of China *Corresponding author Abstract Twenty-nine species of plant-parasitic nematodes were recovered from 282 soil samples collected from turfgrasses in 19 counties in North Carolina (NC) and 20 counties in South Carolina (SC) during 2011 and from previous collections. These nematodes belong to 22 genera in 15 families, including Belonolaimus longicaudatus, Dolichodorus heterocephalus, Filenchus cylindricus, Helicotylenchus dihystera, Scutellonema brachyurum, Hoplolaimus galeatus, Mesocriconema xenoplax, M. curvatum, M. sphaerocephala, Ogma floridense, Paratrichodorus minor, P. allius, Tylenchorhynchus claytoni, Pratylenchus penetrans, Meloidogyne graminis, M. naasi, Heterodera sp., Cactodera sp., Hemicycliophora conida, Loofia thienemanni, Hemicaloosia graminis, Hemicriconemoides wessoni, H. -
Taxonomic Keys to Plant, Soil and Aquatic Nematodes
i TAXONOMIC KEYS TO PLANT, SOIL AND AQUATIC NEMATODES BRUCE E. HOPPER and ELDON J. CAIRNS ALABAMA POLYTECHNIC INSTITUTE AUBURN, ALA. 1959 Sponsored By The SOUTHERN REGIONAL NEMATODE PROJECT (S-19) ^ TAXONOMIC KEYS TO PLANT, SOIL AND AQUATIC NEMATODES BRUCE E. HOPPER and ELDON J. CAIRNS ALABAMA POLYTECHNIC INSTITUTE AUBURN, ALA. 1959 Sponsored By The SOUTHERN REGIONAL NEMATODE PROJECT (S-19) N / . A. PREFACE A few consolidated sources of descriptions and illustrations of plant and soil forms, in particular, are available and should be used along with the taxonomic keys. At best, keys are only attempted short cuts to" the recognition of certain specimens. In all cases check the deci- sions by referral to descriptions and illustrations of the nematodes. There are some excellent volumes available to workers who do not have access to the necessarily large reprint files of the taxonomist. The book by Filipjev & Stekhoven, 19i+l can still be purchased. The book by T. Goodey, 195l is out of print, but can be found in some libraries; so useful a book should be reprinted soon. Fortunately, two other works that every nematologist should have are again available. These are the monographs by Thorne and Swanger, 1936 (reprinted 1957) and Thorne, 1939 (reprinted 19^7 )« V/e have drawn heavily from all of these sources and want to point out that keys are by no means a substitute for the infor- mation contained in these soiorces. The book. Introduction to Nematology by Chitwood & Chitwood, is probably bhe recognized standard work on morphology and will be of great help in anderstanding the morphological terms used in the keys.