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Characterization and Antibiotic Sensitivity Profile of Bacteria Isolated from Patients with Respiratory Tract Infections in Bangladesh
Characterization and Antibiotic Sensitivity Profile of Bacteria Isolated from Patients with Respiratory Tract Infections in Bangladesh Shukla Promite1, Sajal K. Saha2, Sunjukta Ahsan1 and Marufa Zerin Akhter1 1Department of Microbiology, University of Dhaka, Dhaka, Bangladesh 2Department of General Practice, Monash University, Building 1, 270 Ferntree Gully Road, Notting Hill VIC 3168, Australia (Received: October 08, 2017; Accepted: December 15, 2017; Published (web): December 23, 2017) ABSTRACT: The study was aimed to characterize bacterial isolates from respiratory tract infections (RTI) and investigate their antibiotic sensitivity profile. Selective media and biochemical tests were used to characterize 40 bacterial isolates. Antibiotic sensitivity testing was conducted using Kirby-Bauer disc diffusion method. About 42.5% (17) RTI patients were infected by Klebsiella pneumoniae, 30% (12) by Escherichia coli and 27.5% (11) by Pseudomonas aeruginosa with no significant gender variation (p-value <0.578). Overall, 47% (out of 20) antibiotics were sensitive, whereas 48% were resistant. Surprisingly, 18% P. aeruginosa and 20% K. pneumoniae were carbapenem-resistant and 4 out of 7 cephalosporin antibiotics were highly resistant irrespective of pathogens. E. coli showed better sensitivity to nitrofurantoin (78%) and levofloxacin (89%), while K. pneumoniae was insensitive to cotrimoxazole (88%), gentamycin (77%) and piperacillin/tazobactam (66%). On the other hand, P. aeruginosa did not respond to P. aeruginosa to nalidixic acid (60%) and ciprofloxacin (60%). This study concludes that nitrofurantoin, levofloxacin, cotrimoxazole, gentamycin and piperacillin/tazobactam antibiotics could be better alternative in treating bacterial RTIs. Key words: Antibiotic sensitivity, bacterial pathogens, RTIs, Bangladesh. INTRODUCTION Antibiotic resistance (AR) is a global public The rise of AR in Bangladesh is probably due to 1 health concern. -
MIO Medium (Motility Indole Ornithine Medium) M378
MIO Medium (Motility Indole Ornithine Medium) M378 Motility Indole Ornithine Medium (MIO Medium) is used for the identification of Enterobacteriaceae on the basis of motility, indole production and ornithine decarboxylase activity. Composition** Ingredients Gms / Litre Casein enzymic hydrolysate 10.000 Peptic digest of animal tissue 10.000 Yeast extract 3.000 L-Ornithine hydrochloride 5.000 Dextrose 1.000 Bromocresol purple 0.020 Agar 2.000 Final pH ( at 25°C) 6.5±0.2 **Formula adjusted, standardized to suit performance parameters Directions Suspend 31.02 grams in 1000 ml distilled water. Heat to boiling to dissolve the medium completely. Dispense in test tubes in 5 ml amounts. Sterilize by autoclaving at 15 lbs pressure (121°C) for 15 minutes. Cool the tubes in an upright position. Principle And Interpretation Motility, indole production and ornithine decarboxylation are routine biochemical tests employed during identification of Enterobacteriaceae . Motility can be demonstrated microscopically (hanging drop) or macroscopically (tube method), where motility is observed as a diffused zone of growth flaring out from the line of inoculation. Indole test is carried out to determine the ability of an organism to split indole from tryptophan by the tryptophanase enzyme. On reaction with Kovacs reagent, indole combines with the colour in the alcohol layer, which is visualized as a red ring (in the alcohol layer) (1). If the test organisms possess the specific decarboxylase enzyme, then ornithine is decarboxylated to putrescine, an amine, resulting in a subsequent rise in the pH of the medium towards alkalinity. This causes the pH indicator bromocresol purple to change from purple to yellow colour. -
Electrooxidation Enables Highly Regioselective Dearomative Annulation of Indole and Benzofuran Derivatives
ARTICLE https://doi.org/10.1038/s41467-019-13829-4 OPEN Electrooxidation enables highly regioselective dearomative annulation of indole and benzofuran derivatives Kun Liu1, Wenxu Song1, Yuqi Deng1, Huiyue Yang1, Chunlan Song1, Takfaoui Abdelilah1, Shengchun Wang 1, Hengjiang Cong 1, Shan Tang1 & Aiwen Lei1* 1234567890():,; The dearomatization of arenes represents a powerful synthetic methodology to provide three-dimensional chemicals of high added value. Here we report a general and practical protocol for regioselective dearomative annulation of indole and benzofuran derivatives in an electrochemical way. Under undivided electrolytic conditions, a series of highly functio- nalized five to eight-membered heterocycle-2,3-fused indolines and dihydrobenzofurans, which are typically unattainable under thermal conditions, can be successfully accessed in high yield with excellent regio- and stereo-selectivity. This transformation can also tolerate a wide range of functional groups and achieve good efficiency in large-scale synthesis under oxidant-free conditions. In addition, cyclic voltammetry, electron paramagnetic resonance (EPR) and kinetic studies indicate that the dehydrogenative dearomatization annulations arise from the anodic oxidation of indole into indole radical cation, and this process is the rate- determining step. 1 College of Chemistry and Molecular Sciences, Institute for Advanced Studies (IAS), Wuhan University, Wuhan 430072, P. R. China. *email: aiwenlei@whu. edu.cn NATURE COMMUNICATIONS | (2020) 11:3 | https://doi.org/10.1038/s41467-019-13829-4 | www.nature.com/naturecommunications 1 ARTICLE NATURE COMMUNICATIONS | https://doi.org/10.1038/s41467-019-13829-4 reaking the aromatic systems of electron-rich arenes or fused indolines (Fig. 1a)39–44. Therefore, it is highly appealing to heteroarenes provides three-dimensional chemicals of high develop efficient approaches to allow for their preparation. -
05686 DMACA (Indol Detection Disks)
05686 DMACA (Indol Detection Disks) The DMACA Indole discs are used for Indole test to determine the ability of an organism to split tryptophan into indole and α-aminopropionic acid. The presence of indole can be detected by the addition of DMACA which results in a bluish-purple complex. With this method it is possible to differentiate Escherichia coli from Klebsiella. Composition: (1 package contains 50 disks) The discs contain p-Dimethylaminocinnamaldehyde (DMACA). Directions: Place the disc on suspected colony from e.g. UTI ChromoSelect Agar, modified (16636) or Christensen’s Urea Agar (27048) plate on filter paper. Observe for appearance of blue-purple color within 10-30 seconds. Quality control: Test Organisms (ATCC) DMACA Escherichia coli (25922) + Pseudomonas aeruginosa (27853) - Klebsiella pneumoniae (13883) - 1. Staphylococcus aureus 2. Escherichia coli Page 1 of 2 References: 1. R. Vracko, J.C. Sherris, Indole-spot test in bacteriology., Am. J. Clin. Pathol., 39, 429 (1963) 2. V.L. Sutter, W.T. Carter, Evaluation of media and reagents for indole-spot test in anaerobic bacteriology., Am. J. Clin. Pathol., 58, 335 (1972) 3. G.D. Fay, A.L. Barry, Methods for detecting indole production by gram-negative nonsporeforming anaerobes., Appl. Micro. 27, 562 (1974) 4. D.F. Welch, P.A. Ahlin, J.M. Matsen, Differentiation of Haemophilus spp. in respiratory isolate cultures by an indole spot test., J. Clin. Micro. 15, 216 (1982) 5. H.D. Isenberg, Ed., Clinical microbiology procedures handbook, Vol 1., Washington, DC, ASM (1992) 6. B.A. Forbes, D.F. Sahm, A.S. Weissfeld, Bailey and Scott's diagnostic microbiology., 10th ed., St Louis, Mosby (1998) 7. -
Heterocycles 2 Daniel Palleros
Heterocycles 2 Daniel Palleros Heterocycles 1. Structures 2. Aromaticity and Basicity 2.1 Pyrrole 2.2 Imidazole 2.3 Pyridine 2.4 Pyrimidine 2.5 Purine 3. Π-excessive and Π-deficient Heterocycles 4. Electrophilic Aromatic Substitution 5. Oxidation-Reduction 6. DNA and RNA Bases 7. Tautomers 8. H-bond Formation 9. Absorption of UV Radiation 10. Reactions and Mutations Heterocycles 3 Daniel Palleros Heterocycles Heterocycles are cyclic compounds in which one or more atoms of the ring are heteroatoms: O, N, S, P, etc. They are present in many biologically important molecules such as amino acids, nucleic acids and hormones. They are also indispensable components of pharmaceuticals and therapeutic drugs. Caffeine, sildenafil (the active ingredient in Viagra), acyclovir (an antiviral agent), clopidogrel (an antiplatelet agent) and nicotine, they all have heterocyclic systems. O CH3 N HN O O N O CH 3 N H3C N N HN N OH O S O H N N N 2 N O N N O CH3 N CH3 caffeine sildenafil acyclovir Cl S N CH3 N N H COOCH3 nicotine (S)-clopidogrel Here we will discuss the chemistry of this important group of compounds beginning with the simplest rings and continuing to more complex systems such as those present in nucleic acids. Heterocycles 4 Daniel Palleros 1. Structures Some of the most important heterocycles are shown below. Note that they have five or six-membered rings such as pyrrole and pyridine or polycyclic ring systems such as quinoline and purine. Imidazole, pyrimidine and purine play a very important role in the chemistry of nucleic acids and are highlighted. -
Synbiotics Alleviate the Gut Indole Load and Dysbiosis in Chronic Kidney Disease
cells Article Synbiotics Alleviate the Gut Indole Load and Dysbiosis in Chronic Kidney Disease Chih-Yu Yang 1,2,3,4 , Ting-Wen Chen 5,6 , Wan-Lun Lu 5, Shih-Shin Liang 7,8 , Hsien-Da Huang 5,†, Ching-Ping Tseng 4,5,* and Der-Cherng Tarng 1,3,4,9,* 1 Institute of Clinical Medicine, School of Medicine, National Yang-Ming University, Taipei 11221, Taiwan; [email protected] 2 Stem Cell Research Center, National Yang-Ming University, Taipei 11221, Taiwan 3 Division of Nephrology, Department of Medicine, Taipei Veterans General Hospital, Taipei 11217, Taiwan 4 Center for Intelligent Drug Systems and Smart Bio-Devices (IDS2B), Hsinchu 30010, Taiwan 5 Department of Biological Science and Technology, National Chiao Tung University, Hsinchu 30010, Taiwan; [email protected] (T.-W.C.); [email protected] (W.-L.L.); [email protected] (H.-D.H.) 6 Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu 30010, Taiwan 7 Department of Biotechnology, College of Life Science, Kaohsiung Medical University, Kaohsiung 80708, Taiwan; [email protected] 8 Institute of Biomedical Science, College of Science, National Sun Yat-Sen University, Kaohsiung 80424, Taiwan 9 Department and Institute of Physiology, School of Medicine, National Yang-Ming University, Taipei 11221, Taiwan * Correspondence: [email protected] (C.-P.T.); [email protected] (D.-C.T.) † Current affiliation: Warshel Institute for Computational Biology, School of Life and Health Sciences, The Chinese University of Hong Kong, Longgang District, Shenzhen 518172, China. Abstract: Chronic kidney disease (CKD) has long been known to cause significant digestive tract pathology. -
Organophotocatalytic Dearomatization of Indoles, Pyrroles and Benzo(Thio)Furans Via a Giese-Type Transformation
ARTICLE https://doi.org/10.1038/s42004-021-00460-y OPEN Organophotocatalytic dearomatization of indoles, pyrroles and benzo(thio)furans via a Giese-type transformation Yueteng Zhang1, Peng Ji1, Feng Gao1, Yue Dong1, He Huang2, Changqing Wang1, Ziyuan Zhou3 & ✉ Wei Wang 1 Accessing fascinating organic and biological significant indolines via dearomatization of indoles represents one of the most efficient approaches. However, it has been difficult for the dearomatization of the electron deficient indoles. Here we report the studies leading to 1234567890():,; developing a photoredox mediated Giese-type transformation strategy for the dear- omatization of the indoles. The reaction has been implemented for chemoselectively breaking indolyl C=C bonds embedded in the aromatic system. The synthetic power of this strategy has been demonstrated by using structurally diverse indoles bearing common electron- withdrawing groups including (thio)ester, amide, ketone, nitrile and even aromatics at either C2 or C3 positions and ubiquitous carboxylic acids as radical coupling partner with high trans- stereoselectivity (>20:1 dr). This manifold can also be applied to other aromatic heterocycles including pyrroles, benzofurans and benzothiophenes. Furthermore, enantioselective dear- omatization of indoles has been achieved by a chiral camphorsultam auxiliary with high diastereoselectivity. 1 Departments of Pharmacology and Toxicology and Chemistry and Biochemistry, and BIO5 Institute, University of Arizona, Tucson, AZ, USA. 2 Department of Chemistry and Chemical -
The Relationship Between Growth and Indole-3-Acetic Acid Content of Roots of Pisum Sativum L
The Relationship between Growth and Indole-3-Acetic Acid Content of Roots of Pisum sativum L. Author(s): William L. Pengelly and John G. Torrey Reviewed work(s): Source: Botanical Gazette, Vol. 143, No. 2 (Jun., 1982), pp. 195-200 Published by: The University of Chicago Press Stable URL: http://www.jstor.org/stable/2474706 . Accessed: 03/04/2012 15:52 Your use of the JSTOR archive indicates your acceptance of the Terms & Conditions of Use, available at . http://www.jstor.org/page/info/about/policies/terms.jsp JSTOR is a not-for-profit service that helps scholars, researchers, and students discover, use, and build upon a wide range of content in a trusted digital archive. We use information technology and tools to increase productivity and facilitate new forms of scholarship. For more information about JSTOR, please contact [email protected]. The University of Chicago Press is collaborating with JSTOR to digitize, preserve and extend access to Botanical Gazette. http://www.jstor.org BOT. GAZ. 143(2):195-200. 1982. ? 1982 by The Universityof Chicago. All rightsreserved. 0006-8071/82/4302-0004$02.00 THE RELATIONSHIP BETWEEN GROWTH AND INDOLE-3-ACETIC ACID CONTENT OF ROOTS OF PISUM SATIVUM L. WILLIAM L. PENGELLY1 AND JOHN G. TORREY Cabot Foundation,Harvard University,Petersham, Massachusetts 01366 The indole-3-aceticacid (IAA) contentof roots and shoots of light-grownpea seedlings(Pisizmi sali,zim L. 'Little Marvel') growingat differentrates was studied by radioimmunoassayduring the firstweek of germination.Different growth rates were obtained by daily irrigationwith either deionized water or a dilute Hoagland's mineralnutrient solution. -
One Hundred Years of Benzotropone Chemistry
One hundred years of benzotropone chemistry Arif Dastan*1, Haydar Kilic2,3 and Nurullah Saracoglu*1 Review Open Access Address: Beilstein J. Org. Chem. 2018, 14, 1120–1180. 1Department of Chemistry, Science Faculty, Atatürk University, doi:10.3762/bjoc.14.98 25240, Erzurum, Turkey, 2Oltu Vocational Training School, Atatürk University, 25400, Erzurum, Turkey and 3East Anotolia High Received: 27 December 2017 Technology Application and Research Center, Atatürk University, Accepted: 20 April 2018 25240, Erzurum, Turkey Published: 23 May 2018 Email: Associate Editor: B. Stoltz Arif Dastan* - [email protected]; Nurullah Saracoglu* - [email protected] © 2018 Dastan et al.; licensee Beilstein-Institut. License and terms: see end of document. * Corresponding author Keywords: benzotropolone; benzotropone; dibenzotropone; halobenzotropolone; halobenzotropone; tribenzotropone; tropone Abstract This review focuses on the chemistry of benzo-annulated tropones and tropolones reported since the beginning of the 20th century, which are currently used as tools by the synthetic and biological communities. Review 1. Introduction Tropone (1) and tropolone (2) have fascinated organic chemists have been reported in the literature in a number of natural forms for well over one hundred years. The carbocycles 1 and 2 are a (Figure 1) [1-8]. These compounds have a structural class special variety of organic compounds and represent a nonben- spacing from the simple monocyclic tropones, such as the po- zenoid type of aromatic system (Scheme 1). Their dipolar reso- tent antifungal and antibiotic monoterpene β-thujaplicin (4) nance structures such as tropylium oxide form 1B and 2B have [17-23] (isolated from the heartwood and essential oils of trees been reported to provide a Hückel sextet of electrons that is of the family Cupressaceae), to complex macrocyclic ana- necessary for aromaticity (Scheme 1) [1-9]. -
Heterocyclic Chemistrychemistry
HeterocyclicHeterocyclic ChemistryChemistry Professor J. Stephen Clark Room C4-04 Email: [email protected] 2011 –2012 1 http://www.chem.gla.ac.uk/staff/stephenc/UndergraduateTeaching.html Recommended Reading • Heterocyclic Chemistry – J. A. Joule, K. Mills and G. F. Smith • Heterocyclic Chemistry (Oxford Primer Series) – T. Gilchrist • Aromatic Heterocyclic Chemistry – D. T. Davies 2 Course Summary Introduction • Definition of terms and classification of heterocycles • Functional group chemistry: imines, enamines, acetals, enols, and sulfur-containing groups Intermediates used for the construction of aromatic heterocycles • Synthesis of aromatic heterocycles • Carbon–heteroatom bond formation and choice of oxidation state • Examples of commonly used strategies for heterocycle synthesis Pyridines • General properties, electronic structure • Synthesis of pyridines • Electrophilic substitution of pyridines • Nucleophilic substitution of pyridines • Metallation of pyridines Pyridine derivatives • Structure and reactivity of oxy-pyridines, alkyl pyridines, pyridinium salts, and pyridine N-oxides Quinolines and isoquinolines • General properties and reactivity compared to pyridine • Electrophilic and nucleophilic substitution quinolines and isoquinolines 3 • General methods used for the synthesis of quinolines and isoquinolines Course Summary (cont) Five-membered aromatic heterocycles • General properties, structure and reactivity of pyrroles, furans and thiophenes • Methods and strategies for the synthesis of five-membered heteroaromatics -
Escherichia Coli Isolates Causing Asymptomatic Bacteriuria in Catheterized and Noncatheterized Individuals Possess Similar Virulence Propertiesᰔ 1 2 1 2
JOURNAL OF CLINICAL MICROBIOLOGY, July 2010, p. 2449–2458 Vol. 48, No. 7 0095-1137/10/$12.00 doi:10.1128/JCM.01611-09 Copyright © 2010, American Society for Microbiology. All Rights Reserved. Escherichia coli Isolates Causing Asymptomatic Bacteriuria in Catheterized and Noncatheterized Individuals Possess Similar Virulence Propertiesᰔ 1 2 1 2 Rebecca E. Watts, Viktoria Hancock, Cheryl-Lynn Y. Ong, Rebecca Munk Vejborg, Downloaded from Amanda N. Mabbett,1 Makrina Totsika,1 David F. Looke,3 Graeme R. Nimmo,4 Per Klemm,2 and Mark A. Schembri1* School of Chemistry and Molecular Biosciences, University of Queensland, Brisbane, Queensland, Australia1; Microbial Adhesion Group, DTU Food, Technical University of Denmark, Lyngby, Denmark2; and Infection Management Services, Princess Alexandra Hospital,3 and Queensland Health Pathology Service, Department of Microbiology, Royal Brisbane and Women’s Hospital,4 Brisbane, Queensland, Australia Received 19 August 2009/Returned for modification 12 November 2009/Accepted 22 April 2010 http://jcm.asm.org/ Urinary tract infections (UTIs) are among the most common infectious diseases of humans, with Escherichia coli being responsible for >80% of all cases. Asymptomatic bacteriuria (ABU) occurs when bacteria colonize the urinary tract without causing clinical symptoms and can affect both catheterized patients (catheter- associated ABU [CA-ABU]) and noncatheterized patients. Here, we compared the virulence properties of a collection of ABU and CA-ABU nosocomial E. coli isolates in terms of antibiotic resistance, phylogenetic grouping, specific UTI-associated virulence genes, hemagglutination characteristics, and biofilm formation. CA-ABU isolates were similar to ABU isolates with regard to the majority of these characteristics; exceptions were that CA-ABU isolates had a higher prevalence of the polysaccharide capsule marker genes kpsMT II and on October 22, 2015 by University of Queensland Library kpsMT K1, while more ABU strains were capable of mannose-resistant hemagglutination. -
78719 Kovac's Reagent Strips (Indole Reagent Test Strips According to Kovac)
78719 Kovac's Reagent Strips (Indole Reagent Test strips according to Kovac) For determination of the ability of microorganisms, primarily Enterobacteriaceae, to split indole from the tryptophan molecule by tryptophanases. Tryptophanase present in e.g. E. coli cleaves tryptophan to indole and pyruvic acid and ammonia. p-Aminobenzaldehyde present in the reagent builds with indole a pink complex. Composition: (1 package contains 25 strips) Sterile filter paper strips impregnated with Kovac`s Reagent Kovac`s reagent is prepared by dissolving 10 g of p-aminobenzaldehyde in 150 ml of isoamylalcohol and then slowly adding 50 ml of concentrated hydrochloric acid. Directions: Indole production by the organism is observed by inserting the Kovac's Reagent Strips between the plug and inner wall of the tube, above the inoculated Peptone Water (Cat. No. 70179) and incubated at 35°C for 18-24 hours. Quality control: Cultural response after 18-24 hours at 35°C in Peptone Water (Cat. No. 70179). Pink coloration of the lower part of the strip is a positive reaction and means microorganisms possess tryptophanase activity. A negative reaction shows no color change. Test Organisms (ATCC) Indole production Escherichia coli (25922) + Enterobacter aeogenes (13048) - 1. Control 2. Escherichia coli 3. Staphylococcus aureus Page 1 of 2 References: 1. J.F. MacFaddin, Biochemical Tests for Identification of Medical Bacteria, 2nd ed., Williams and Wilkins, Baltimore (1980) 2. A.E. Greenberg, R.R. Trussell, L.S. Clesceri (Eds.), Standard Methods for the Examination of Water and Wastewater, 16th ed., A.P.H.A, Washington, D.C. (1985) Precautions and Disclaimer This product is for R&D use only, not for drug, household, or other uses.