One Hundred Years of Benzotropone Chemistry
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Electrooxidation Enables Highly Regioselective Dearomative Annulation of Indole and Benzofuran Derivatives
ARTICLE https://doi.org/10.1038/s41467-019-13829-4 OPEN Electrooxidation enables highly regioselective dearomative annulation of indole and benzofuran derivatives Kun Liu1, Wenxu Song1, Yuqi Deng1, Huiyue Yang1, Chunlan Song1, Takfaoui Abdelilah1, Shengchun Wang 1, Hengjiang Cong 1, Shan Tang1 & Aiwen Lei1* 1234567890():,; The dearomatization of arenes represents a powerful synthetic methodology to provide three-dimensional chemicals of high added value. Here we report a general and practical protocol for regioselective dearomative annulation of indole and benzofuran derivatives in an electrochemical way. Under undivided electrolytic conditions, a series of highly functio- nalized five to eight-membered heterocycle-2,3-fused indolines and dihydrobenzofurans, which are typically unattainable under thermal conditions, can be successfully accessed in high yield with excellent regio- and stereo-selectivity. This transformation can also tolerate a wide range of functional groups and achieve good efficiency in large-scale synthesis under oxidant-free conditions. In addition, cyclic voltammetry, electron paramagnetic resonance (EPR) and kinetic studies indicate that the dehydrogenative dearomatization annulations arise from the anodic oxidation of indole into indole radical cation, and this process is the rate- determining step. 1 College of Chemistry and Molecular Sciences, Institute for Advanced Studies (IAS), Wuhan University, Wuhan 430072, P. R. China. *email: aiwenlei@whu. edu.cn NATURE COMMUNICATIONS | (2020) 11:3 | https://doi.org/10.1038/s41467-019-13829-4 | www.nature.com/naturecommunications 1 ARTICLE NATURE COMMUNICATIONS | https://doi.org/10.1038/s41467-019-13829-4 reaking the aromatic systems of electron-rich arenes or fused indolines (Fig. 1a)39–44. Therefore, it is highly appealing to heteroarenes provides three-dimensional chemicals of high develop efficient approaches to allow for their preparation. -
Heterocycles 2 Daniel Palleros
Heterocycles 2 Daniel Palleros Heterocycles 1. Structures 2. Aromaticity and Basicity 2.1 Pyrrole 2.2 Imidazole 2.3 Pyridine 2.4 Pyrimidine 2.5 Purine 3. Π-excessive and Π-deficient Heterocycles 4. Electrophilic Aromatic Substitution 5. Oxidation-Reduction 6. DNA and RNA Bases 7. Tautomers 8. H-bond Formation 9. Absorption of UV Radiation 10. Reactions and Mutations Heterocycles 3 Daniel Palleros Heterocycles Heterocycles are cyclic compounds in which one or more atoms of the ring are heteroatoms: O, N, S, P, etc. They are present in many biologically important molecules such as amino acids, nucleic acids and hormones. They are also indispensable components of pharmaceuticals and therapeutic drugs. Caffeine, sildenafil (the active ingredient in Viagra), acyclovir (an antiviral agent), clopidogrel (an antiplatelet agent) and nicotine, they all have heterocyclic systems. O CH3 N HN O O N O CH 3 N H3C N N HN N OH O S O H N N N 2 N O N N O CH3 N CH3 caffeine sildenafil acyclovir Cl S N CH3 N N H COOCH3 nicotine (S)-clopidogrel Here we will discuss the chemistry of this important group of compounds beginning with the simplest rings and continuing to more complex systems such as those present in nucleic acids. Heterocycles 4 Daniel Palleros 1. Structures Some of the most important heterocycles are shown below. Note that they have five or six-membered rings such as pyrrole and pyridine or polycyclic ring systems such as quinoline and purine. Imidazole, pyrimidine and purine play a very important role in the chemistry of nucleic acids and are highlighted. -
Synbiotics Alleviate the Gut Indole Load and Dysbiosis in Chronic Kidney Disease
cells Article Synbiotics Alleviate the Gut Indole Load and Dysbiosis in Chronic Kidney Disease Chih-Yu Yang 1,2,3,4 , Ting-Wen Chen 5,6 , Wan-Lun Lu 5, Shih-Shin Liang 7,8 , Hsien-Da Huang 5,†, Ching-Ping Tseng 4,5,* and Der-Cherng Tarng 1,3,4,9,* 1 Institute of Clinical Medicine, School of Medicine, National Yang-Ming University, Taipei 11221, Taiwan; [email protected] 2 Stem Cell Research Center, National Yang-Ming University, Taipei 11221, Taiwan 3 Division of Nephrology, Department of Medicine, Taipei Veterans General Hospital, Taipei 11217, Taiwan 4 Center for Intelligent Drug Systems and Smart Bio-Devices (IDS2B), Hsinchu 30010, Taiwan 5 Department of Biological Science and Technology, National Chiao Tung University, Hsinchu 30010, Taiwan; [email protected] (T.-W.C.); [email protected] (W.-L.L.); [email protected] (H.-D.H.) 6 Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu 30010, Taiwan 7 Department of Biotechnology, College of Life Science, Kaohsiung Medical University, Kaohsiung 80708, Taiwan; [email protected] 8 Institute of Biomedical Science, College of Science, National Sun Yat-Sen University, Kaohsiung 80424, Taiwan 9 Department and Institute of Physiology, School of Medicine, National Yang-Ming University, Taipei 11221, Taiwan * Correspondence: [email protected] (C.-P.T.); [email protected] (D.-C.T.) † Current affiliation: Warshel Institute for Computational Biology, School of Life and Health Sciences, The Chinese University of Hong Kong, Longgang District, Shenzhen 518172, China. Abstract: Chronic kidney disease (CKD) has long been known to cause significant digestive tract pathology. -
Organophotocatalytic Dearomatization of Indoles, Pyrroles and Benzo(Thio)Furans Via a Giese-Type Transformation
ARTICLE https://doi.org/10.1038/s42004-021-00460-y OPEN Organophotocatalytic dearomatization of indoles, pyrroles and benzo(thio)furans via a Giese-type transformation Yueteng Zhang1, Peng Ji1, Feng Gao1, Yue Dong1, He Huang2, Changqing Wang1, Ziyuan Zhou3 & ✉ Wei Wang 1 Accessing fascinating organic and biological significant indolines via dearomatization of indoles represents one of the most efficient approaches. However, it has been difficult for the dearomatization of the electron deficient indoles. Here we report the studies leading to 1234567890():,; developing a photoredox mediated Giese-type transformation strategy for the dear- omatization of the indoles. The reaction has been implemented for chemoselectively breaking indolyl C=C bonds embedded in the aromatic system. The synthetic power of this strategy has been demonstrated by using structurally diverse indoles bearing common electron- withdrawing groups including (thio)ester, amide, ketone, nitrile and even aromatics at either C2 or C3 positions and ubiquitous carboxylic acids as radical coupling partner with high trans- stereoselectivity (>20:1 dr). This manifold can also be applied to other aromatic heterocycles including pyrroles, benzofurans and benzothiophenes. Furthermore, enantioselective dear- omatization of indoles has been achieved by a chiral camphorsultam auxiliary with high diastereoselectivity. 1 Departments of Pharmacology and Toxicology and Chemistry and Biochemistry, and BIO5 Institute, University of Arizona, Tucson, AZ, USA. 2 Department of Chemistry and Chemical -
The Relationship Between Growth and Indole-3-Acetic Acid Content of Roots of Pisum Sativum L
The Relationship between Growth and Indole-3-Acetic Acid Content of Roots of Pisum sativum L. Author(s): William L. Pengelly and John G. Torrey Reviewed work(s): Source: Botanical Gazette, Vol. 143, No. 2 (Jun., 1982), pp. 195-200 Published by: The University of Chicago Press Stable URL: http://www.jstor.org/stable/2474706 . Accessed: 03/04/2012 15:52 Your use of the JSTOR archive indicates your acceptance of the Terms & Conditions of Use, available at . http://www.jstor.org/page/info/about/policies/terms.jsp JSTOR is a not-for-profit service that helps scholars, researchers, and students discover, use, and build upon a wide range of content in a trusted digital archive. We use information technology and tools to increase productivity and facilitate new forms of scholarship. For more information about JSTOR, please contact [email protected]. The University of Chicago Press is collaborating with JSTOR to digitize, preserve and extend access to Botanical Gazette. http://www.jstor.org BOT. GAZ. 143(2):195-200. 1982. ? 1982 by The Universityof Chicago. All rightsreserved. 0006-8071/82/4302-0004$02.00 THE RELATIONSHIP BETWEEN GROWTH AND INDOLE-3-ACETIC ACID CONTENT OF ROOTS OF PISUM SATIVUM L. WILLIAM L. PENGELLY1 AND JOHN G. TORREY Cabot Foundation,Harvard University,Petersham, Massachusetts 01366 The indole-3-aceticacid (IAA) contentof roots and shoots of light-grownpea seedlings(Pisizmi sali,zim L. 'Little Marvel') growingat differentrates was studied by radioimmunoassayduring the firstweek of germination.Different growth rates were obtained by daily irrigationwith either deionized water or a dilute Hoagland's mineralnutrient solution. -
Aminoketone, Oxazole and Thiazole Synthesis. Part 15. 2
Issue in Honor of Prof. C. D. Nenitzescu ARKIVOC 2002 (ii) 64-72 Aminoketone, oxazole and thiazole synthesis. Part 15.1 2-[4-(4-Halobenzenesulphonyl)-phenyl]-5-aryloxazoles Iosif Schiketanz,a Constantin Draghici,b Ioana Saramet,c and Alexandru T. Balaban a,d a Polytechnic University Bucharest, Organic Chemistry Department, Splaiul Independentei 313, Bucharest, Roumania b “C. D. Nenitzescu” Institute of Organic Chemistry, Roumanian Academy, Splaiul Independentei 202B, Bucharest, Roumania c Faculty of Pharmacy, Organic Chemistry Department, Traian Vuia Street 6, Bucharest, Roumania d Texas A&M University at Galveston, Department of Marine Sciences, 5007 Avenue U, Galveston, TX 77551, USA E-mail: [email protected] (received 14 Sep 2001; accepted 21 Mar 2002; published on the web 29 Mar 2002) Abstract Acylaminoacylation of aromatic hydrocarbons (benzene, toluene, meta-xylene, mesitylene) with 2-[4-benzenesulfonyl-(4-halophenyl)]-5-oxazolones in the presence of anhydrous aluminum chloride leads to 2-aza-1,4-diones 5 which cyclize under the action of phosphorus oxychloride yielding the corresponding 2-[4-(4-halobenzenesulphonyl)-phenyl]-5-aryloxazoles 6. The para- halogens are chloro or bromo atoms. Electronic absorption, vibrational, 1H-NMR and 13C-NMR spectral data are presented. The UV and NMR spectra provide evidence for the non-coplanarity of the oxazole and mesityl rings. Keywords: Amoinoketone, oxazole, thiazole, acylaminoacylation, synthesis Introduction In continuation of the previous part in this series,1 we now report the preparation -
In Vitroo and in Vivo Pharmacology of 4-Substituted
IN VITROO AND IN VIVO PHARMACOLOGY OF 4-SUBSTITUTED METHOXYBENZOYL-ARYL-THIAZOLES (SMART) AND 2- ARYLTHIAZOLIDINE-4-CARBOXYLIC ACID AMIDES (ATCAA) Dissertation Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of The Ohio State University By Chien-Ming Li, M.S. Graduate Program in Pharmacy The Ohio State University 2010 Dissertation Committee: Dr. James T. Dalton, Advisor Dr. Robert W. Brueggemeier Dr. Thomas D. Schmittgen Dr. Mitch A. Phelps Copyright by Chien-Ming Li 2010 ABSTRACT Formation of microtubules is a dynamic process that involves polymerization and depolymerization of the αβ-tubulin heterodimers. Drugs that enhance or inhibit tubulin polymerization can destroy this dynamic process, arresting cells in the G2/M phase of the cell cycle. Although drugs that target tubulin generally demonstrate cytotoxic potency in sub-nanomolar range, resistance due to drug efflux is a common phenomenon among the antitubulin agents. We recently reported a class of 4-Substituted Methoxybenzoyl-Aryl- Thiazoles (SMART), which exhibited great in vitro and in vivo potency. SMART compounds effectively inhibited tubulin polymerization in dose dependent manner, suggesting that SMART compounds may bind to tubulin and subsequently hamper the polymerization. To date the only method to determine the binding of inhibitor to tubulin has been competitive radioligand binding assays. We developed a novel non-radioactive mass spectrometry (MS) binding assay to study the tubulin binding of colchicine, vinblastine and paclitaxel. The method involves a very simple step of separating the unbound ligand from macromolecules using ultrafiltration. The unbound ligand in the filtrate can be accurately determined using a highly sensitive and specific LC-MS/MS method. -
Heterocyclic Chemistrychemistry
HeterocyclicHeterocyclic ChemistryChemistry Professor J. Stephen Clark Room C4-04 Email: [email protected] 2011 –2012 1 http://www.chem.gla.ac.uk/staff/stephenc/UndergraduateTeaching.html Recommended Reading • Heterocyclic Chemistry – J. A. Joule, K. Mills and G. F. Smith • Heterocyclic Chemistry (Oxford Primer Series) – T. Gilchrist • Aromatic Heterocyclic Chemistry – D. T. Davies 2 Course Summary Introduction • Definition of terms and classification of heterocycles • Functional group chemistry: imines, enamines, acetals, enols, and sulfur-containing groups Intermediates used for the construction of aromatic heterocycles • Synthesis of aromatic heterocycles • Carbon–heteroatom bond formation and choice of oxidation state • Examples of commonly used strategies for heterocycle synthesis Pyridines • General properties, electronic structure • Synthesis of pyridines • Electrophilic substitution of pyridines • Nucleophilic substitution of pyridines • Metallation of pyridines Pyridine derivatives • Structure and reactivity of oxy-pyridines, alkyl pyridines, pyridinium salts, and pyridine N-oxides Quinolines and isoquinolines • General properties and reactivity compared to pyridine • Electrophilic and nucleophilic substitution quinolines and isoquinolines 3 • General methods used for the synthesis of quinolines and isoquinolines Course Summary (cont) Five-membered aromatic heterocycles • General properties, structure and reactivity of pyrroles, furans and thiophenes • Methods and strategies for the synthesis of five-membered heteroaromatics -
78719 Kovac's Reagent Strips (Indole Reagent Test Strips According to Kovac)
78719 Kovac's Reagent Strips (Indole Reagent Test strips according to Kovac) For determination of the ability of microorganisms, primarily Enterobacteriaceae, to split indole from the tryptophan molecule by tryptophanases. Tryptophanase present in e.g. E. coli cleaves tryptophan to indole and pyruvic acid and ammonia. p-Aminobenzaldehyde present in the reagent builds with indole a pink complex. Composition: (1 package contains 25 strips) Sterile filter paper strips impregnated with Kovac`s Reagent Kovac`s reagent is prepared by dissolving 10 g of p-aminobenzaldehyde in 150 ml of isoamylalcohol and then slowly adding 50 ml of concentrated hydrochloric acid. Directions: Indole production by the organism is observed by inserting the Kovac's Reagent Strips between the plug and inner wall of the tube, above the inoculated Peptone Water (Cat. No. 70179) and incubated at 35°C for 18-24 hours. Quality control: Cultural response after 18-24 hours at 35°C in Peptone Water (Cat. No. 70179). Pink coloration of the lower part of the strip is a positive reaction and means microorganisms possess tryptophanase activity. A negative reaction shows no color change. Test Organisms (ATCC) Indole production Escherichia coli (25922) + Enterobacter aeogenes (13048) - 1. Control 2. Escherichia coli 3. Staphylococcus aureus Page 1 of 2 References: 1. J.F. MacFaddin, Biochemical Tests for Identification of Medical Bacteria, 2nd ed., Williams and Wilkins, Baltimore (1980) 2. A.E. Greenberg, R.R. Trussell, L.S. Clesceri (Eds.), Standard Methods for the Examination of Water and Wastewater, 16th ed., A.P.H.A, Washington, D.C. (1985) Precautions and Disclaimer This product is for R&D use only, not for drug, household, or other uses. -
Tryptophan Catabolism by Lactobacillus Spp. : Biochemistry and Implications on Flavor Development in Reduced-Fat Cheddar Cheese
Utah State University DigitalCommons@USU All Graduate Theses and Dissertations Graduate Studies 5-1998 Tryptophan Catabolism by Lactobacillus spp. : Biochemistry and Implications on Flavor Development in Reduced-Fat Cheddar Cheese Sanjay Gummalla Utah State University Follow this and additional works at: https://digitalcommons.usu.edu/etd Part of the Food Chemistry Commons, Food Microbiology Commons, and the Food Processing Commons Recommended Citation Gummalla, Sanjay, "Tryptophan Catabolism by Lactobacillus spp. : Biochemistry and Implications on Flavor Development in Reduced-Fat Cheddar Cheese" (1998). All Graduate Theses and Dissertations. 5454. https://digitalcommons.usu.edu/etd/5454 This Thesis is brought to you for free and open access by the Graduate Studies at DigitalCommons@USU. It has been accepted for inclusion in All Graduate Theses and Dissertations by an authorized administrator of DigitalCommons@USU. For more information, please contact [email protected]. TRYPTOPHAN CATABOLISM BY LACTOBACILLUS SPP.: BIOCHEMISTRY AND IMPLICATIONS ON FLAVOR DEVELOPMENT IN REDUCED-FAT CHEDDAR CHEESE by Sanjay Gummalla A thesis submitted in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE m Nutrition and Food Sciences Approved: UTAH STATE UNIVERSITY Logan, Utah 1998 11 Copyright © Sanjay Gummalla 1998 All Rights Reserved w ABSTRACT Tryptophan Catabolism by Lactobacillus spp. : Biochemistry and Implications on Flavor Development in Reduced-Fat Cheddar Cheese by Sanjay Gummalla, Master of Science Utah State University, 1998 Major Professor: Dr. Jeffery R. Broadbent Department: Nutrition and Food Sciences Amino acids derived from the degradation of casein in cheese serve as precursors for the generation of key flavor compounds. Microbial degradation of tryptophan (Trp) is thought to promote formation of aromatic compounds that impart putrid fecal or unclean flavors in cheese, but pathways for their production have not been established. -
Synthesis and Chemistry of Indole
Synthesis and Chemistry of Indole 1. Introduction: ➢ Indole is a benzo[b]pyrrole formed by the fusion of benzene ring to the 2,3 positions of pyrrole nucleus. ➢ The word “Indole” is derived from the word India, as the heterocycle was first isolated from a blue dye “Indigo” produced in India during sixteenth century. ➢ In 1886, Adolf Baeyer isolated Indole by the pyrolysis of oxindole with Zn dust. Oxindole was originally obtained by the reduction of isatin, which in turn was isolated by the oxidation of Indigo. ➢ Commercially indole is produced from coal tar ➢ Indole is the most widely distributed heterocyle ➢ Indole nucleus is an integral part of thousands of naturally occurring alkaloids, drugs and other compounds. By Dr. Divya Kushwaha 2. Synthesis of Indole 2.1. Fischer Indole Synthesis: ➢ This reaction was discovered in 1983 by Emil Fischer and so far remained the most extensively used method of preparation of indoles. ➢ The synthesis involves cyclization of arylhydrazones under heating conditions in presence of protic acid or lewis acids such as ZnCl2, PCl3, FeCl3, TsOH, HCl, H2SO4, PPA etc. ➢ The starting material arylhydrazoles can be obtained from aldehydes, ketones, keto acids, keto esters and diketones etc. ➢ Reaction produces 2,3-disubtituted products. Unsymmetrical ketones can give a mixture of indoles. 2.2 Madelung Synthesis: ➢ Base catalyzed cyclization of 2-(acylamino)-toluenes under very harsh conditions (typically sodium amide or potassium t-butoxide at 250-300oC). ➢ Limited to the synthesis of simple indoles such as 2-methyl indoles without having any sensitive groups. By Dr. Divya Kushwaha Mechanism: ➢ A modern variant of madelung reaction is performed under milder conditions by the use of alkyllithiums as bases. -
Recent Advances in the Synthesis of Oxazole-Based Molecules Via Van Leusen Oxazole Synthesis
molecules Review Recent Advances in the Synthesis of Oxazole-Based Molecules via van Leusen Oxazole Synthesis Xunan Zheng 1,2, Wei Liu 3,* and Dawei Zhang 1,* 1 College of Chemistry, Jilin University, Changchun 130012, China; [email protected] 2 College of Plant Science, Jilin University, Changchun 130062, China 3 Department of Pesticide Science, Plant Protection College, Shenyang Agricultural University, Shenyang 110866, China * Correspondence: [email protected] (W.L.); [email protected] (D.Z.); Tel.: +86-188-1775-2588 (W.L.); +86-431-8783-6471 (D.Z.) Academic Editors: Anna Carbone and Fabio Bertozzi Received: 2 March 2020; Accepted: 23 March 2020; Published: 31 March 2020 Abstract: Oxazole compounds, including one nitrogen atom and one oxygen atom in a five-membered heterocyclic ring, are present in various biological activities. Due to binding with a widespread spectrum of receptors and enzymes easily in biological systems through various non-covalent interactions, oxazole-based molecules are becoming a kind of significant heterocyclic nucleus, which have received attention from researchers globally, leading them to synthesize diverse oxazole derivatives. The van Leusen reaction, based on tosylmethylisocyanides (TosMICs), is one of the most appropriate strategies to prepare oxazole-based medicinal compounds. In this review, we summarize the recent advances of the synthesis of oxazole-containing molecules utilizing the van Leusen oxazole synthesis from 1972, aiming to look for potential oxazole-based medicinal compounds, which are valuable information for drug discovery and synthesis. Keywords: van Leusen; TosMICs; oxazole; synthesis 1. Introduction The oxazole ring, with one nitrogen atom and one oxygen atom, which are widely displayed in natural products and synthetic molecules, is known as a prime skeleton for drug discovery.