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Hordeum (Poaceae: Triticeae)
Breeding Science 59: 471–480 (2009) Review Progress in phylogenetic analysis and a new infrageneric classification of the barley genus Hordeum (Poaceae: Triticeae) Frank R. Blattner* Leibniz Institute of Plant Genetics and Crop Research (IPK), D-06466 Gatersleben, Germany During the last decade several phylogenetic studies of Hordeum were published using a multitude of loci from the chloroplast and nuclear genomes. In many studies taxon sampling was not representative and, thus, does not allow the inference of relationships among species. Generally, chloroplast data seem not suitable for reliable phylogenetic results, as far reaching incomplete lineage sorting result in nearly arbitrary species relationships within narrow species groups, depending on the individuals included in the analyses. Nuclear loci initially resulted at contradictory phylogenetic hypotheses. However, combining at least three nuclear loci in total evidence analyses finally provides consistent relationships among Hordeum species groups, and supports data from earlier cytological and karyological studies. Thus, recently published phylogenies agree on the monophyly of the four Hordeum genome groups (H, I, Xa, Xu), monophyly of the H/Xu and I/Xa groups, and separation between Asian and American members within the I-genome group. A new infra- generic classification of Hordeum is proposed, dividing the genus in subgenus Hordeum comprising sections Hordeum and Trichostachys, and subgenus Hordeastrum with sections Marina, Nodosa, and Stenostachys. The latter consists of two series reflecting the geographical distribution of the taxa, i.e. series Sibirica with Central Asian taxa and series Critesion comprising native taxa from the Americas. In section Nodosa all allo- polyploid taxa are grouped, which are characterized by I/Xa genome combinations. -
Fire Ecology, Forest Dynamics, and Vegetation Distribution on Square Butte, Chouteau County, Montana
Fire Ecology, Forest Dynamics, and Vegetation Distribution on Square Butte, Chouteau County, Montana Prepared for: U.S. Bureau of Land Management Lewistown District Office By: Elizabeth Crowe Montana Natural Heritage Program Natural Resource Information System Montana State Library January 2004 Fire Ecology, Forest Dynamics, and Vegetation Distribution on Square Butte, Chouteau County, Montana Prepared for: U.S. Bureau of Land Management Lewistown District Office Agreement Number: ESA010009 - Task Order #17 By: Elizabeth Crowe © 2004 Montana Natural Heritage Program P.O. Box 201800 • 1515 East Sixth Avenue • Helena, MT 59620-1800 • 406-444-5354 ii This document should be cited as follows: Crowe, E. 2004. Fire Ecology, Forest Dynamics, and Vegetation Distribution on Square Butte, Chouteau County, Montana. Report to the U.S. Bureau of Land Management, Lewistown District Office. Montana Natural Heritage Program, Helena, MT. 43 pp. plus appendices. iii EXECUTIVE SUMMARY Square Butte is a singular landscape feature of types (41%) and two woodland (forest- southern Chouteau County in central Montana, an shrubland-grassland-rock outcrop) complexes eroded remnant of Tertiary volcanic activity. Most (43%). Pure shrubland and herbaceous habitat of the land area on the butte is managed by the U. types are a minor component (9%) within the S. Department of the Interior, Bureau of Land ACEC boundary. Management (BLM) and has been designated an Area of Critical Environmental Concern (ACEC). The primary stochastic ecological disturbance The BLM partnered with the Montana Natural process on Square Butte is wildfire. The Heritage Program to conduct a survey of vegetation map (Figure 7) produced portrays the biological resources there, focusing on vegetation distribution of vegetative communities and units distribution and fuel loads in forested stands. -
THE IRISH RED DATA BOOK 1 Vascular Plants
THE IRISH RED DATA BOOK 1 Vascular Plants T.G.F.Curtis & H.N. McGough Wildlife Service Ireland DUBLIN PUBLISHED BY THE STATIONERY OFFICE 1988 ISBN 0 7076 0032 4 This version of the Red Data Book was scanned from the original book. The original book is A5-format, with 168 pages. Some changes have been made as follows: NOMENCLATURE has been updated, with the name used in the 1988 edition in brackets. Irish Names and family names have also been added. STATUS: There have been three Flora Protection Orders (1980, 1987, 1999) to date. If a species is currently protected (i.e. 1999) this is stated as PROTECTED, if it was previously protected, the year(s) of the relevant orders are given. IUCN categories have been updated as follows: EN to CR, V to EN, R to V. The original (1988) rating is given in brackets thus: “CR (EN)”. This takes account of the fact that a rare plant is not necessarily threatened. The European IUCN rating was given in the original book, here it is changed to the UK IUCN category as given in the 2005 Red Data Book listing. MAPS and APPENDIX have not been reproduced here. ACKNOWLEDGEMENTS We are most grateful to the following for their help in the preparation of the Irish Red Data Book:- Christine Leon, CMC, Kew for writing the Preface to this Red Data Book and for helpful discussions on the European aspects of rare plant conservation; Edwin Wymer, who designed the cover and who, as part of his contract duties in the Wildlife Service, organised the computer applications to the data in an efficient and thorough manner. -
A Survey of the Elymus L. S. L. Species Complex (Triticeae, Poaceae) in Italy: Taxa and Nothotaxa, New Combinations and Identification Key
Natural History Sciences. Atti Soc. it. Sci. nat. Museo civ. Stor. nat. Milano, 5 (2): 57-64, 2018 DOI: 10.4081/nhs.2018.392 A survey of the Elymus L. s. l. species complex (Triticeae, Poaceae) in Italy: taxa and nothotaxa, new combinations and identification key Enrico Banfi Abstract - Elymus s. l. is a critical topic on which only a little INTRODUCTION light has begun to be made regarding phylogenetic reticulation, Elymus L. s. l. is one of the most debated topic among genome evolution and consistency of genera. In Italy, Elymus s. l. officially includes ten species (nine native, one alien) and some genera within the tribe Triticeae (Poaceae), with represen- well-established and widespread hybrids generally not treated as tatives spread all over the world. It has been the subject little or nothing is known of them. In this paper fourteen species of basic studies (Löve A., 1984; Dewey, 1984) that have (with two subspecies) and six hybrids are taken into account and opened important horizons not only in the field of agroge- the following seven new combinations are proposed: Thinopyrum netic research, but also and especially on systematics and acutum (DC.) Banfi, Thinopyrum corsicum (Hack.) Banfi, Thi- taxonomy. However, the still rather coarse knowledge of nopyrum intermedium (Host) Barkworth & Dewey subsp. pouzolzii (Godr.) Banfi, Thinopyrum obtusiflorum (DC.) Banfi, Thinopyrum the genomes and the lack of a satisfactory interpretation ×duvalii (Loret) Banfi, ×Thinoelymus drucei (Stace) Banfi, ×Thi- of their role in the highly reticulate phylogeny of Triticeae noelymus mucronatus (Opiz) Banfi. Some observations are pro- for a long time discouraged taxonomists to clarify species vided for each subject and a key to species, subspecies and hybrids relationships within Elymus s. -
Phylogeny of Elymus Ststhh Allotetraploids Based on Three Nuclear Genes
Reticulate Evolutionary History of a Complex Group of Grasses: Phylogeny of Elymus StStHH Allotetraploids Based on Three Nuclear Genes Roberta J. Mason-Gamer*, Melissa M. Burns¤a, Marianna Naum¤b Department of Biological Sciences, The University of Illinois at Chicago, Chicago, Illinois, United States of America Abstract Background: Elymus (Poaceae) is a large genus of polyploid species in the wheat tribe Triticeae. It is polyphyletic, exhibiting many distinct allopolyploid genome combinations, and its history might be further complicated by introgression and lineage sorting. We focus on a subset of Elymus species with a tetraploid genome complement derived from Pseudoroegneria (genome St) and Hordeum (H). We confirm the species’ allopolyploidy, identify possible genome donors, and pinpoint instances of apparent introgression or incomplete lineage sorting. Methodology/Principal Findings: We sequenced portions of three unlinked nuclear genes—phosphoenolpyruvate carboxylase, b-amylase, and granule-bound starch synthase I—from 27 individuals, representing 14 Eurasian and North American StStHH Elymus species. Elymus sequences were combined with existing data from monogenomic representatives of the tribe, and gene trees were estimated separately for each data set using maximum likelihood. Trees were examined for evidence of allopolyploidy and additional reticulate patterns. All trees confirm the StStHH genome configuration of the Elymus species. They suggest that the StStHH group originated in North America, and do not support separate North American and European origins. Our results point to North American Pseudoroegneria and Hordeum species as potential genome donors to Elymus. Diploid P. spicata is a prospective St-genome donor, though conflict among trees involving P. spicata and the Eurasian P. -
Orthoptera: Acrididae)
Contributions to the nutritional ecology of the endangered grasshopper Chorthippus pullus (Philippi 1830) (Orthoptera: Acrididae) Diplomarbeit der Philosophisch-naturwissenschaftlichen Fakultät der Universität Bern vorgelegt von Annik Steiner 2006 Leiter der Arbeit: Prof. Dr. Jürg Zettel Zoologisches Institut, Abteilung Synökologie, Bern Table of contents Abstract..................................................................................................................................... 1 Zusammenfassung.................................................................................................................... 2 1 Introduction ...................................................................................................................... 3 2 Material and Methods...................................................................................................... 5 2.1 Study area................................................................................................................... 5 2.2 Survey of vegetation and ground cover...................................................................... 5 2.3 Faeces collection ........................................................................................................ 6 2.4 Faecal analysis............................................................................................................ 7 2.5 Feeding experiments .................................................................................................. 8 2.6 Mandibular morphology............................................................................................ -
Expression and Function of the Chloroplast-Encoded Gene Matk
Expression and Function of the Chloroplast-encoded Gene matK. Michelle Marie Barthet Dissertation submitted to the faculty of the Virginia Polytechnic Institute and State University in partial fulfillment of the requirements for the degree of Doctor of Philosophy In Biological Sciences K. W. Hilu, Chair E. Beers G. Gillaspy J. Sible R. A. Walker February 9, 2006 Blacksburg, Virginia Keywords: MatK, chloroplast, maturase, fast-evolving, Orchidaceae Copyright 2006, Michelle Marie Barthet Expression and Function of the chloroplast-encoded gene matK. Michelle Marie Barthet ABSTRACT The chloroplast matK gene has been identified as a rapidly evolving gene at nucleotide and corresponding amino acid levels. The high number of nucleotide substitutions and length mutations in matK has provided a strong phylogenetic signal for resolving plant phylogenies at various taxonomic levels. However, these same features have raised questions as to whether matK produces a functional protein product. matK is the only proposed chloroplast-encoded group II intron maturase. There are 15 genes in the chloroplast that would require a maturase for RNA splicing. Six of these genes have introns that are not excised by a nuclear imported maturase, leaving MatK as the only candidate for processing introns in these genes. Very little research has been conducted concerning the expression and function of this important gene and its protein product. It has become crucial to understand matK expression in light of its significance in RNA processing and plant systematics. In this study, we examined the expression, function and evolution of MatK using a combination of molecular and genetic methods. Our findings indicate that matK RNA and protein is expressed in a variety of plant species, and expression of MatK protein is regulated by development. -
CEETO Sustainable Tourism Action Plan
SUSTAINABLE TOURISM ACTION PLAN • High Modenese Apennine Regional Park • Nirano’s Mud Volcanoes Natural Reserve D.T2.2.3 – Emilia-Romagna Region (PP01) – Ver.2.3 Central Emilia Parks Managing Authority 05/2019 Table of Contents 1. Introduction .................................................................................................... 3 2. Protected Areas managed by the Central Emilia Authority .......................................... 4 3. Demographic setting of the areas ......................................................................... 8 4. Protected Areas involved in CEETO Project ............................................................. 9 4.1. High Modenese Apennine Regional Park ............................................................. 9 4.1.1. Flora and Fauna .................................................................................... 11 4.1.2. Pratignano Lake .................................................................................... 12 4.1.3. Santo Lake ........................................................................................... 13 4.2. Salse di Nirano Nature Reserve ...................................................................... 14 4.2.1. Flora and Fauna .................................................................................... 16 5. Strategy ........................................................................................................ 19 5.1. Vision for sustainable tourism ...................................................................... -
A Survey of the Elymus L. Sl Species Complex
A survey of the Elymus L. s. l. species complex (Triticeae, Poaceae) in Italy: taxa and nothotaxa, new combinations and identification key Enrico Banfi1 1 Sezione di Botanica, Museo di Storia Naturale di Milano, Corso Venezia 55, 20121 Milano, Italia. E-mail: [email protected] Abstract - Elymus s. l. is a critical topic on which only a little light has begun to be made regarding phylogenetic reticulation, genome evolution and consistency of genera. In Italy, Elymus s. l. officially includes ten species (nine native, one alien) and some well-established and widespread hybrids generally not treated as little or nothing is known of them. In this paper fourteen species (with two subspecies) and six hybrids are taken into account and the following seven new combinations are proposed: Thinopyrum acutum (DC.) Banfi, Thinopyrum corsicum (Hack.) Banfi, Thinopyrum intermedium (Host) Barkworth & Dewey subsp. pouzolzii (Godr.) Banfi, Thinopyrum obtusiflorum (DC.) Banfi, Thinopyrum duvalii (Loret) Banfi, Thinoelymus drucei (Stace) Banfi, Thinoelymus mucronatus (Opiz) Banfi. Some observations are provided for each subject and a key to species, subspecies and hybrids is made available. Key words: combinations, Elymus, Elytrigia, hybrids, Italy, key, nomenclature, taxonomy, Thinopyrum, Thinoelymus. Riassunto - I recenti progressi della filogenesi in campo genomiale hanno consentito di riproporre la delimitazione di alcuni generi più o meno sommersi in Elymus s. l. In Italia ad Elymus s. l. sono ascritte ufficialmente dieci specie (nove autoctone e una alloctona) oltre ad alcuni ibridi stabilizzati e ben diffusi, ma poco considerati in quanto mal conosciuti. In questa sede sono prese in considerazione quattordici specie (con due sottospecie) e sei ibridi, inoltre vengono proposte le seguenti sette nuove combinazioni: Thinopyrum acutum (DC.) Banfi, Thinopyrum corsicum (Hack.) Banfi, Thinopyrum intermedium (Host) Barkworth & Dewey subsp. -
Species Boundaries and Population Divergence in the Pyrenean Endemic Relict Genus Borderea (Dioscoreaceae) As Revealed by Micros
Aliso: A Journal of Systematic and Evolutionary Botany Volume 22 | Issue 1 Article 42 2006 Species Boundaries and Population Divergence in the Pyrenean Endemic Relict Genus Borderea (Dioscoreaceae) as Revealed by Microsatellite (SSR) and Other Hypervariable Markers José Gabriel Segarra-Moragues Universidad de Zaragoza Pilar Catalan Universidad de Zaragoza Follow this and additional works at: http://scholarship.claremont.edu/aliso Part of the Botany Commons Recommended Citation Segarra-Moragues, José Gabriel and Catalan, Pilar (2006) "Species Boundaries and Population Divergence in the Pyrenean Endemic Relict Genus Borderea (Dioscoreaceae) as Revealed by Microsatellite (SSR) and Other Hypervariable Markers," Aliso: A Journal of Systematic and Evolutionary Botany: Vol. 22: Iss. 1, Article 42. Available at: http://scholarship.claremont.edu/aliso/vol22/iss1/42 Dioscoreales MONOCOTS Comparative Biology and Evolution Excluding Poales Aliso 22, pp. 541-555 iC· 2006, Rancho Santa Ana Botanic Garden SPECIES BOUNDARIES AND POPULATION DIVERGENCE IN THE PYRENEAN ENDEMIC RELICT GENUS BORDEREA (DIOSCOREACEAE) AS REVEALED BY MICROSATELLITE (SSR) AND OTHER HYPERVARIABLE MARKERS JOSE GABRIEL SEGARRA-MORAGUES AND PILAR CATALAN 1 Departamento de Agricultura y Econom{a Agraria, Universidad de Zaragoza, Escuela Politecnica Superior de Huesca, Ctra. Cuarte km. 1, E-22071 Huesca, Spain ([email protected]) 1Corresponding author ([email protected]) ABSTRACT Microsatellite alleles were used to delimit the genetic boundaries and divergence of the two relictual endemic Pyrenean taxa Borde rea chouardii and B. pyrenaica (Dioscoreaceae ), and to infer the different life histories followed by each species. Our study was conducted on the same populations previously analyzed with allozymes and RAPD markers. The three studied data sets were congruent in the inference of a single evolutionary scenario for the split of the two Borderea taxa from a common Tertiary ancestor in the Prepyrenees, thus supporting their taxonomic treatment as separate species. -
Technical Report Series No. 287 Advisory List of Environmental Weeds in Victoria
Advisory list of environmental weeds in Victoria M. White, D. Cheal, G.W. Carr, R. Adair, K. Blood and D. Meagher April 2018 Arthur Rylah Institute for Environmental Research Technical Report Series No. 287 Arthur Rylah Institute for Environmental Research Department of Environment, Land, Water and Planning PO Box 137 Heidelberg, Victoria 3084 Phone (03) 9450 8600 Website: www.ari.vic.gov.au Citation: White, M., Cheal, D., Carr, G. W., Adair, R., Blood, K. and Meagher, D. (2018). Advisory list of environmental weeds in Victoria. Arthur Rylah Institute for Environmental Research Technical Report Series No. 287. Department of Environment, Land, Water and Planning, Heidelberg, Victoria. Front cover photo: Ixia species such as I. maculata (Yellow Ixia) have escaped from gardens and are spreading in natural areas. (Photo: Kate Blood) © The State of Victoria Department of Environment, Land, Water and Planning 2018 This work is licensed under a Creative Commons Attribution 3.0 Australia licence. You are free to re-use the work under that licence, on the condition that you credit the State of Victoria as author. The licence does not apply to any images, photographs or branding, including the Victorian Coat of Arms, the Victorian Government logo, the Department of Environment, Land, Water and Planning logo and the Arthur Rylah Institute logo. To view a copy of this licence, visit http://creativecommons.org/licenses/by/3.0/au/deed.en Printed by Melbourne Polytechnic, Preston Victoria ISSN 1835-3827 (print) ISSN 1835-3835 (pdf)) ISBN 978-1-76077-000-6 (print) ISBN 978-1-76077-001-3 (pdf/online) Disclaimer This publication may be of assistance to you but the State of Victoria and its employees do not guarantee that the publication is without flaw of any kind or is wholly appropriate for your particular purposes and therefore disclaims all liability for any error, loss or other consequence which may arise from you relying on any information in this publication. -
Analysis of the Genetic Diversity of Wild, Spanish Populations of the Species Elymus Caninus
Analysis of the genetic diversity of wild, Spanish populations of the species Elymus caninus (L.) Linnaeus and Elymus hispanicus (Boiss.) Talavera by PCR-based markers and endosperm proteins Rosa Nieto-López, Carlos Casanova, Consuelo Soler To cite this version: Rosa Nieto-López, Carlos Casanova, Consuelo Soler. Analysis of the genetic diversity of wild, Spanish populations of the species Elymus caninus (L.) Linnaeus and Elymus hispanicus (Boiss.) Talavera by PCR-based markers and endosperm proteins. Agronomie, EDP Sciences, 2000, 20 (8), pp.893-905. 10.1051/agro:2000166. hal-00886092 HAL Id: hal-00886092 https://hal.archives-ouvertes.fr/hal-00886092 Submitted on 1 Jan 2000 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Agronomie 20 (2000) 893–905 893 © INRA, EDP Sciences 2000 Original article Analysis of the genetic diversity of wild, Spanish populations of the species Elymus caninus (L.) Linnaeus and Elymus hispanicus (Boiss.) Talavera by PCR-based markers and endosperm proteins Rosa María NIETO-LÓPEZ, Carlos CASANOVA, Consuelo SOLER* Department of Plant Breeding and Biotechnology, SGIT-INIA, Finca “La Canaleja”, PO Box 1045, Alcalá de Henares, 28800 Madrid, Spain (Received 12 April 2000; accepted 3 July 2000) Abstract – The use of wild species in plant improvement is greatly favored if their genetic variability and taxonomical relationships are known.